Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47389 * 2 1 4 4 C 1.36937 * 119.99664 * 276.88891 * 3 2 1 5 5 H 1.08003 * 119.99904 * 126.58102 * 4 3 2 6 6 C 1.38811 * 120.00321 * 306.58023 * 4 3 2 7 7 N 1.31615 * 120.00042 * 354.12982 * 6 4 3 8 8 Si 1.86799 * 120.00042 * 174.12440 * 6 4 3 9 9 H 1.48504 * 109.46838 * 60.00258 * 8 6 4 10 10 H 1.48494 * 109.47240 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47311 * 300.00507 * 8 6 4 12 12 C 1.45973 * 120.00021 * 96.89248 * 3 2 1 13 13 H 1.11547 * 105.35748 * 64.07204 * 12 3 2 14 14 C 1.49254 * 111.52822 * 309.63793 * 12 3 2 15 15 C 1.30403 * 124.07423 * 301.99769 * 14 12 3 16 16 C 1.50408 * 123.01581 * 358.47233 * 15 14 12 17 17 C 1.54042 * 108.01982 * 259.22449 * 16 15 14 18 18 C 1.55934 * 106.18567 * 56.80979 * 17 16 15 19 19 C 1.54245 * 106.69839 * 56.13277 * 18 17 16 20 20 C 1.48642 * 110.94952 * 177.90524 * 12 3 2 21 21 H 1.08994 * 109.47368 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47651 * 300.00579 * 1 2 3 23 23 H 1.09003 * 109.46450 * 60.00631 * 1 2 3 24 24 H 1.08997 * 109.47651 * 239.99421 * 2 1 3 25 25 H 1.09000 * 109.46708 * 120.00088 * 2 1 3 26 26 H 0.97003 * 120.00419 * 179.97438 * 7 6 4 27 27 H 1.10206 * 118.35868 * 121.91777 * 14 12 3 28 28 H 1.09511 * 118.51413 * 179.20865 * 15 14 12 29 29 H 1.07532 * 112.94920 * 20.75860 * 16 15 14 30 30 H 1.09603 * 108.95080 * 142.30286 * 16 15 14 31 31 H 1.08343 * 109.56114 * 175.33670 * 17 16 15 32 32 H 1.08293 * 109.61166 * 298.23038 * 17 16 15 33 33 H 1.08841 * 109.31675 * 174.77000 * 18 17 16 34 34 H 1.08419 * 109.93097 * 296.45123 * 18 17 16 35 35 H 1.08494 * 109.93101 * 6.97648 * 19 18 17 36 36 H 1.09381 * 108.50845 * 125.82934 * 19 18 17 37 37 H 1.09586 * 107.56158 * 305.07329 * 20 12 3 38 38 H 1.09679 * 107.44623 * 191.43477 * 20 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1125 2.0741 -1.1774 5 1 1.6391 3.0399 -1.2749 6 6 2.8164 1.5352 -2.2455 7 7 3.4894 0.4146 -2.0919 8 14 2.8083 2.4003 -3.9011 9 1 3.3752 3.7644 -3.7495 10 1 3.6289 1.6273 -4.8676 11 1 1.4137 2.4967 -4.4025 12 6 2.4047 2.0187 1.2550 13 1 3.2792 1.4342 1.6264 14 6 1.3433 1.8709 2.2939 15 6 0.1172 2.2910 2.1505 16 6 -0.3642 3.0101 0.9204 17 6 -0.4050 4.5176 1.2349 18 6 1.0359 4.9063 1.6871 19 6 1.9863 4.4883 0.5465 20 6 2.9149 3.3945 1.0173 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 3.9810 0.0378 -2.8384 27 1 1.6051 1.3758 3.2430 28 1 -0.5919 2.1230 2.9680 29 1 0.2591 2.8354 0.0617 30 1 -1.3868 2.6858 0.6957 31 1 -0.6699 5.0678 0.3400 32 1 -1.1050 4.7020 2.0402 33 1 1.0887 5.9834 1.8341 34 1 1.2903 4.3821 2.6014 35 1 1.4110 4.1537 -0.3104 36 1 2.5809 5.3583 0.2535 37 1 3.7297 3.3235 0.2879 38 1 3.3759 3.7401 1.9505 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379541822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = 32.902086 kcal Electronic energy + Delta-G solvation = -17005.845052 eV Core-core repulsion = 14656.158638 eV Total energy + Delta-G solvation = -2349.686414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.64932 -34.88931 -32.57186 -32.10400 -30.79860 -28.28761 -25.83728 -25.60359 -23.13018 -21.05049 -20.33267 -19.76754 -17.23027 -16.21232 -15.42458 -14.73666 -14.23266 -13.92360 -13.70445 -13.31560 -12.89895 -12.65715 -12.20382 -11.69997 -11.43949 -11.19645 -11.02674 -10.82403 -10.78900 -10.64701 -10.35208 -10.28745 -10.08731 -10.03274 -9.61371 -9.41559 -9.32404 -9.12324 -8.42434 -8.11319 -6.19042 -5.60178 -3.47990 3.02225 3.37846 3.43075 3.44932 4.51034 5.36777 5.44276 5.46454 5.57190 5.67536 5.72417 5.81359 5.98769 6.08338 6.25407 6.29969 6.38294 6.44636 6.49641 6.53470 6.63895 6.66460 6.79494 6.85399 6.93082 7.07699 7.10849 7.16767 7.22798 7.33084 7.41326 7.56912 7.77751 7.84639 7.99808 8.73476 9.37690 9.88813 10.59458 11.29966 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.012784 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.591884 B = 2189.696203 C = 2584.020992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 N -0.572 5.572 4 C -0.265 4.265 5 H 0.063 0.937 6 C 0.027 3.973 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.212 3.788 13 H 0.005 0.995 14 C -0.158 4.158 15 C -0.138 4.138 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.084 4.084 21 H 0.024 0.976 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.018 0.982 26 H 0.254 0.746 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 4.920 6.206 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 N -0.295 5.295 4 C -0.395 4.395 5 H 0.080 0.920 6 C -0.175 4.175 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.217 1.217 11 H -0.207 1.207 12 C 0.106 3.894 13 H 0.022 0.978 14 C -0.178 4.178 15 C -0.156 4.156 16 C -0.140 4.140 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.122 4.122 21 H 0.043 0.957 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.711 4.796 6.096 9.075 hybrid contribution -0.018 0.216 -0.767 0.797 sum -4.728 5.011 5.329 8.710 Atomic orbital electron populations 1.22517 1.01023 0.98236 1.01181 1.20678 0.89883 0.86968 0.99821 1.43568 1.74783 1.10373 1.00758 1.19012 1.27580 1.03076 0.89793 0.91977 1.25663 0.95575 0.97031 0.99223 1.69898 1.32158 1.20008 1.30689 0.86622 0.77721 0.79510 0.84351 1.20544 1.21704 1.20736 1.18322 0.91706 0.92645 0.86756 0.97752 1.23202 0.96431 0.99451 0.98669 1.22325 0.95987 0.99652 0.97684 1.21085 1.01035 0.93059 0.98817 1.22197 0.96689 0.96880 0.99680 1.22441 0.95369 0.98811 0.99365 1.21671 0.97918 0.97006 0.98918 1.20149 0.99073 0.93508 0.99442 0.95729 0.93261 0.93504 0.90575 0.96332 0.93624 0.89795 0.89991 0.86366 0.93942 0.92329 0.93247 0.93722 0.91569 0.89150 0.93903 0.91541 0.95062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.31 37.16 0.35 -3.19 16 2 C 0.15 3.60 5.58 -4.04 -0.02 3.58 16 3 N -0.57 -13.64 1.61 -169.54 -0.27 -13.92 16 4 C -0.26 -6.75 6.37 -15.06 -0.10 -6.84 16 5 H 0.06 1.56 4.26 -52.48 -0.22 1.34 16 6 C 0.03 0.72 5.26 -17.43 -0.09 0.62 16 7 N -0.89 -25.21 11.66 55.49 0.65 -24.56 16 8 Si 0.89 21.04 29.56 -169.99 -5.02 16.02 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.21 4.51 2.17 -72.19 -0.16 4.35 16 13 H 0.00 0.11 8.27 -50.45 -0.42 -0.31 16 14 C -0.16 -2.92 7.28 -36.55 -0.27 -3.18 16 15 C -0.14 -2.38 5.96 -36.00 -0.21 -2.59 16 16 C -0.10 -1.82 4.04 -27.48 -0.11 -1.93 16 17 C -0.12 -1.80 5.92 -24.62 -0.15 -1.94 16 18 C -0.12 -1.92 5.73 -24.51 -0.14 -2.06 16 19 C -0.12 -2.14 4.98 -27.08 -0.13 -2.28 16 20 C -0.08 -1.67 3.59 -29.86 -0.11 -1.78 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.96 4.56 -51.93 -0.24 0.73 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.08 2.04 6.10 -51.93 -0.32 1.72 16 25 H 0.02 0.42 7.97 -51.93 -0.41 0.01 16 26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.08 1.43 8.24 -51.24 -0.42 1.01 16 28 H 0.08 1.28 8.18 -51.64 -0.42 0.85 16 29 H 0.12 2.43 2.84 -52.74 -0.15 2.28 16 30 H 0.04 0.72 8.19 -51.59 -0.42 0.30 16 31 H 0.06 0.87 8.09 -52.30 -0.42 0.45 16 32 H 0.05 0.69 8.08 -52.32 -0.42 0.26 16 33 H 0.04 0.63 8.13 -52.02 -0.42 0.21 16 34 H 0.07 1.06 5.98 -52.25 -0.31 0.75 16 35 H 0.09 1.82 3.39 -52.21 -0.18 1.64 16 36 H 0.04 0.73 8.17 -51.71 -0.42 0.30 16 37 H 0.07 1.49 7.57 -51.60 -0.39 1.10 16 38 H 0.03 0.56 8.03 -51.54 -0.41 0.14 16 LS Contribution 270.98 15.07 4.08 4.08 Total: -1.00 -26.75 270.98 -7.70 -34.45 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.99 Total: 1.16 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.14 Total: -17.24 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.37 Total: -38.47 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.75 -7.70 -34.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379541822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.354 kcal (2) G-P(sol) polarization free energy of solvation -26.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds