Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47010 * 2 1 4 4 C 1.50694 * 109.47657 * 240.00037 * 2 1 3 5 5 H 1.07999 * 120.00130 * 245.46345 * 4 2 1 6 6 C 1.37886 * 119.99995 * 65.45690 * 4 2 1 7 7 N 1.31509 * 119.99629 * 9.54795 * 6 4 2 8 8 Si 1.86793 * 119.99884 * 189.55038 * 6 4 2 9 9 H 1.48498 * 109.47407 * 84.99396 * 8 6 4 10 10 H 1.48497 * 109.47104 * 204.99641 * 8 6 4 11 11 H 1.48507 * 109.47201 * 324.99315 * 8 6 4 12 12 N 1.46897 * 109.47139 * 119.99668 * 2 1 3 13 13 C 1.46902 * 111.00189 * 275.00443 * 12 2 1 14 14 C 1.53002 * 109.47082 * 179.97438 * 13 12 2 15 15 C 1.55927 * 115.92338 * 297.93625 * 14 13 12 16 16 C 1.54582 * 104.64469 * 199.97148 * 15 14 13 17 17 C 1.55927 * 104.64354 * 0.02562 * 16 15 14 18 18 C 1.55932 * 104.49855 * 289.72186 * 17 16 15 19 19 C 1.55708 * 104.74360 * 70.92718 * 18 17 16 20 20 C 1.56954 * 100.65512 * 33.77826 * 17 16 15 21 21 H 1.09005 * 109.47134 * 183.75529 * 1 2 3 22 22 H 1.08994 * 109.47606 * 303.75543 * 1 2 3 23 23 H 1.08998 * 109.47318 * 63.76025 * 1 2 3 24 24 H 0.97007 * 120.00017 * 179.97438 * 7 6 4 25 25 H 1.00895 * 111.00101 * 151.04799 * 12 2 1 26 26 H 1.08999 * 109.47346 * 299.99784 * 13 12 2 27 27 H 1.08996 * 109.47176 * 60.00008 * 13 12 2 28 28 H 1.09002 * 110.39639 * 318.75904 * 15 14 13 29 29 H 1.08990 * 110.39943 * 81.17635 * 15 14 13 30 30 H 1.08994 * 110.39879 * 241.20857 * 16 15 14 31 31 H 1.08993 * 110.50129 * 118.83878 * 16 15 14 32 32 H 1.08995 * 115.92287 * 160.03554 * 17 16 15 33 33 H 1.08993 * 110.40538 * 189.06878 * 18 17 16 34 34 H 1.09001 * 110.40156 * 311.37776 * 18 17 16 35 35 H 1.08999 * 109.84791 * 240.80860 * 19 18 17 36 36 H 1.08992 * 111.46328 * 118.05227 * 19 18 17 37 37 H 1.08994 * 112.02557 * 189.69477 * 20 17 16 38 38 H 1.08995 * 112.02046 * 63.17080 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0355 -2.5935 8 14 2.1764 -1.1779 -4.0101 9 1 1.0247 -2.0611 -4.3241 10 1 2.4231 -0.2612 -5.1520 11 1 3.3851 -2.0069 -3.7708 12 7 2.0196 -0.6924 1.1994 13 6 2.0823 0.2227 2.3469 14 6 2.5949 -0.5331 3.5745 15 6 1.7075 -1.7175 4.0655 16 6 2.1397 -1.9481 5.5316 17 6 3.2471 -0.8808 5.7886 18 6 4.4613 -1.3657 4.9388 19 6 4.0350 -1.1187 3.4617 20 6 2.7234 0.3010 4.8984 21 1 -0.3634 -1.0255 0.0673 22 1 -0.3634 0.5710 0.8543 23 1 -0.3634 0.4543 -0.9217 24 1 1.1321 1.4107 -3.4723 25 1 2.9172 -1.1204 1.0288 26 1 2.7587 1.0463 2.1183 27 1 1.0869 0.6163 2.5525 28 1 0.6527 -1.4468 4.0184 29 1 1.8991 -2.6087 3.4681 30 1 2.5438 -2.9528 5.6550 31 1 1.2983 -1.7921 6.2066 32 1 3.4477 -0.6445 6.8336 33 1 5.3476 -0.7753 5.1710 34 1 4.6525 -2.4236 5.1184 35 1 4.0193 -2.0633 2.9182 36 1 4.6973 -0.4068 2.9692 37 1 3.4580 1.1011 4.8078 38 1 1.7588 0.6748 5.2416 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379640337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -16.498977 kcal Electronic energy + Delta-G solvation = -15837.164915 eV Core-core repulsion = 13485.336311 eV Total energy + Delta-G solvation = -2351.828604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00081 -35.67019 -32.59867 -30.21779 -30.14926 -27.59840 -27.48925 -25.19338 -23.36540 -21.93599 -19.85562 -19.42888 -17.95851 -16.54955 -15.26825 -15.12811 -14.86283 -14.60599 -13.88918 -13.44305 -12.72973 -12.37719 -12.22493 -12.00877 -11.56998 -11.44073 -11.11234 -10.97198 -10.85243 -10.77272 -10.64794 -10.59974 -10.47794 -10.23537 -10.15842 -9.97080 -9.69852 -9.57206 -8.83531 -8.40428 -7.17022 -6.03288 -4.05053 3.32176 3.38218 3.40896 4.42639 4.63485 4.65171 4.68232 5.25177 5.30736 5.35647 5.40243 5.50694 5.57632 5.65321 5.66334 5.83039 5.91881 5.97877 6.14487 6.19430 6.23454 6.25908 6.35556 6.40242 6.47525 6.56837 6.68684 6.74568 6.88519 7.13690 7.23000 7.46791 7.81942 7.90073 8.21989 8.43343 8.75116 9.07064 9.59793 11.06019 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048198 B = 0.006092 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.794740 B = 4595.114203 C = 4776.310226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.209 3.791 3 H 0.007 0.993 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.685 5.685 13 C 0.089 3.911 14 C -0.064 4.064 15 C -0.100 4.100 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.120 4.120 21 H 0.033 0.967 22 H 0.007 0.993 23 H 0.061 0.939 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -2.953 14.361 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 H 0.025 0.975 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.316 5.316 13 C -0.041 4.041 14 C -0.065 4.065 15 C -0.138 4.138 16 C -0.159 4.159 17 C -0.125 4.125 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.158 4.158 21 H 0.053 0.947 22 H 0.026 0.974 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.688 -3.075 14.367 14.936 hybrid contribution 0.902 0.072 -1.161 1.472 sum 3.590 -3.003 13.207 14.011 Atomic orbital electron populations 1.21632 0.98395 0.98728 0.98842 1.19096 0.92072 0.92886 0.85821 0.97545 1.21230 1.35814 1.08111 0.90657 0.92256 1.24923 0.95289 0.94615 0.99031 1.69976 1.45043 1.13985 1.23757 0.86604 0.78729 0.80059 0.82539 1.20519 1.21414 1.20000 1.60657 1.32090 1.33074 1.05789 1.21451 0.99185 0.93405 0.90024 1.22865 0.94786 0.95005 0.93828 1.22409 0.99091 0.98229 0.94053 1.22664 0.97750 0.98135 0.97398 1.23514 0.95588 0.95833 0.97599 1.22771 0.97100 1.00263 0.95351 1.22768 0.96098 1.00848 0.95623 1.23584 1.00298 0.96592 0.95353 0.94740 0.97350 0.92004 0.92950 0.85262 0.96213 0.91818 0.92081 0.91451 0.92299 0.92501 0.89116 0.92554 0.92093 0.91535 0.92072 0.91729 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 9.27 37.16 0.34 -2.58 16 2 C 0.21 5.36 2.47 -68.87 -0.17 5.19 16 3 H 0.01 0.19 7.74 -51.93 -0.40 -0.21 16 4 C -0.52 -14.42 8.48 -34.44 -0.29 -14.72 16 5 H 0.06 1.63 7.69 -52.49 -0.40 1.22 16 6 C 0.06 1.78 5.17 -17.82 -0.09 1.69 16 7 N -0.89 -25.89 12.16 55.43 0.67 -25.22 16 8 Si 0.89 21.49 29.55 -169.99 -5.02 16.46 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.69 -14.71 6.19 -107.96 -0.67 -15.38 16 13 C 0.09 1.65 5.32 -3.82 -0.02 1.63 16 14 C -0.06 -0.96 1.14 -149.25 -0.17 -1.13 16 15 C -0.10 -1.43 5.78 -24.34 -0.14 -1.57 16 16 C -0.12 -1.44 6.21 -24.34 -0.15 -1.59 16 17 C -0.11 -1.21 5.19 -85.35 -0.44 -1.65 16 18 C -0.12 -1.37 6.23 -23.72 -0.15 -1.51 16 19 C -0.12 -1.61 5.30 -23.76 -0.13 -1.74 16 20 C -0.12 -1.54 6.11 -22.43 -0.14 -1.68 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.01 0.17 7.55 -51.93 -0.39 -0.22 16 23 H 0.06 1.66 6.83 -51.93 -0.35 1.31 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.33 7.02 7.60 -39.29 -0.30 6.73 16 26 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 27 H 0.06 1.21 7.51 -51.93 -0.39 0.82 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 30 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 35 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -28.12 293.71 -8.94 -37.06 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.81 Total: 2.31 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.55 Total: -19.67 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.01 Total: -40.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.12 -8.94 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379640337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.565 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds