Wall clock time and date at job start Mon Mar 30 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 H 1.09002 * 110.01662 * 33.60676 * 13 12 2 15 15 C 1.53881 * 110.03371 * 272.16849 * 13 12 2 16 16 C 1.54268 * 106.59443 * 240.71724 * 15 13 12 17 17 C 1.54884 * 104.19737 * 336.38468 * 16 15 13 18 18 C 1.54267 * 110.03195 * 155.00169 * 13 12 2 19 19 H 1.08999 * 110.48599 * 24.21514 * 18 13 12 20 20 C 1.52999 * 110.48187 * 261.70239 * 18 13 12 21 21 C 1.53010 * 117.49373 * 128.62369 * 20 18 13 22 22 C 1.53001 * 117.49899 * 60.00569 * 20 18 13 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 28 28 H 1.09000 * 110.03086 * 359.97438 * 15 13 12 29 29 H 1.09001 * 110.03399 * 121.43248 * 15 13 12 30 30 H 1.09004 * 110.48046 * 217.70506 * 16 15 13 31 31 H 1.08998 * 110.59722 * 95.12905 * 16 15 13 32 32 H 1.08997 * 110.75896 * 279.63256 * 17 16 15 33 33 H 1.09001 * 110.91372 * 156.33326 * 17 16 15 34 34 H 1.08993 * 115.55659 * 274.32761 * 20 18 13 35 35 H 1.08998 * 117.49870 * 0.02562 * 21 20 18 36 36 H 1.09000 * 117.49708 * 145.02331 * 21 20 18 37 37 H 1.09007 * 117.49911 * 214.97546 * 22 20 18 38 38 H 1.08998 * 117.50086 * 359.97066 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2753 0.9529 2.2864 15 6 3.4431 0.9407 2.3747 16 6 4.1172 0.5558 3.7079 17 6 2.9370 0.1636 4.6310 18 6 1.9772 -0.5734 3.6641 19 1 2.3025 -1.6029 3.5147 20 6 0.5438 -0.5381 4.1979 21 6 -0.1093 -1.8744 4.5572 22 6 -0.5567 -1.1161 3.3059 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 1.4496 -1.4978 1.4101 28 1 4.0571 0.6098 1.5371 29 1 3.2969 2.0199 2.3282 30 1 4.6584 1.4069 4.1213 31 1 4.7894 -0.2906 3.5674 32 1 2.4601 1.0512 5.0467 33 1 3.2702 -0.5027 5.4267 34 1 0.2917 0.3266 4.8117 35 1 0.4824 -2.7784 4.4136 36 1 -0.7911 -1.8888 5.4075 37 1 -1.5329 -0.6317 3.3330 38 1 -0.2596 -1.5210 2.3385 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389241236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:01 Heat of formation + Delta-G solvation = -9.806803 kcal Electronic energy + Delta-G solvation = -16025.645002 eV Core-core repulsion = 13674.106592 eV Total energy + Delta-G solvation = -2351.538410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30924 -37.27584 -36.37820 -34.00570 -30.39700 -29.56607 -27.29349 -26.87746 -23.38970 -22.72911 -22.25522 -20.85345 -20.33904 -18.30408 -17.07858 -16.75529 -16.61443 -15.61226 -15.12776 -14.71884 -14.70847 -14.27559 -13.74419 -13.42362 -13.11620 -12.95142 -12.77070 -12.42666 -12.35878 -12.21364 -12.08956 -12.01813 -11.88008 -11.73736 -11.58264 -11.33239 -10.98997 -10.90939 -10.59117 -10.47286 -8.88716 -8.08778 -6.20070 1.41769 1.43654 1.51396 2.43752 2.90911 3.18962 3.58126 3.79666 3.82179 3.90209 4.15628 4.19912 4.34578 4.54847 4.64006 4.69201 4.75023 4.79492 4.82817 4.90273 4.93013 4.97496 5.10940 5.13594 5.16297 5.24734 5.26956 5.29926 5.38089 5.46312 5.56222 5.58065 5.71225 5.87515 6.31240 6.71392 6.90359 6.98646 7.50102 8.96410 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031949 B = 0.007731 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.189944 B = 3621.008589 C = 4107.099819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.220 3.780 3 H -0.004 1.004 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.271 1.271 12 N -0.678 5.678 13 C 0.090 3.910 14 H 0.020 0.980 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.104 4.104 18 C -0.059 4.059 19 H 0.074 0.926 20 C -0.147 4.147 21 C -0.160 4.160 22 C -0.200 4.200 23 H 0.028 0.972 24 H 0.023 0.977 25 H 0.057 0.943 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -2.355 14.908 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 H 0.014 0.986 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.197 1.197 12 N -0.309 5.309 13 C -0.020 4.020 14 H 0.038 0.962 15 C -0.158 4.158 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.078 4.078 19 H 0.093 0.907 20 C -0.165 4.165 21 C -0.197 4.197 22 C -0.237 4.237 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.144 0.856 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.222 -2.159 14.595 14.804 hybrid contribution -0.914 0.023 -1.256 1.554 sum 0.308 -2.136 13.339 13.512 Atomic orbital electron populations 1.22188 1.00077 0.98800 0.99734 1.18880 0.89844 0.92409 0.87745 0.98579 1.21455 1.30323 1.12389 0.91228 0.92904 1.25728 0.95512 0.95899 1.01885 1.70016 1.38086 1.24318 1.23938 0.85593 0.78629 0.78696 0.78566 1.20941 1.19954 1.19656 1.60912 1.57250 1.09234 1.03456 1.22154 0.95686 0.93869 0.90275 0.96226 1.22196 0.96429 0.98469 0.98680 1.22271 0.97583 1.01315 0.93871 1.22442 0.94844 1.00089 0.96785 1.21726 0.93280 0.99375 0.93378 0.90721 1.22379 0.92735 0.98235 1.03118 1.23060 1.03273 0.94945 0.98400 1.22969 0.99346 1.05844 0.95533 0.95261 0.95762 0.92375 0.93075 0.85568 0.93370 0.93238 0.90449 0.91706 0.90761 0.89711 0.87100 0.88595 0.87211 0.88927 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.37 8.49 71.98 0.61 -6.76 16 2 C 0.22 11.49 2.41 44.17 0.11 11.59 16 3 H 0.00 -0.22 7.77 -2.38 -0.02 -0.24 16 4 C -0.52 -29.47 8.84 25.60 0.23 -29.25 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -54.60 11.32 21.45 0.24 -54.36 16 8 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 N -0.68 -29.43 5.89 -469.58 -2.77 -32.19 16 13 C 0.09 3.29 2.30 45.64 0.10 3.39 16 14 H 0.02 0.79 6.86 -2.39 -0.02 0.77 16 15 C -0.12 -4.14 6.46 31.32 0.20 -3.94 16 16 C -0.11 -2.89 6.83 31.67 0.22 -2.67 16 17 C -0.10 -2.34 6.33 31.88 0.20 -2.14 16 18 C -0.06 -1.63 2.47 -9.72 -0.02 -1.66 16 19 H 0.07 2.17 7.76 -2.39 -0.02 2.15 16 20 C -0.15 -3.66 5.09 -10.79 -0.05 -3.71 16 21 C -0.16 -3.47 10.19 30.60 0.31 -3.16 16 22 C -0.20 -5.49 9.93 30.59 0.30 -5.19 16 23 H 0.03 1.38 8.10 -2.39 -0.02 1.36 16 24 H 0.02 1.07 7.46 -2.39 -0.02 1.05 16 25 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.33 13.52 6.34 -89.70 -0.57 12.95 16 28 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.54 7.93 -2.39 -0.02 1.52 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 2.52 7.96 -2.39 -0.02 2.50 16 35 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.08 2.48 5.96 -2.39 -0.01 2.47 16 Total: -1.00 -61.14 295.89 2.60 -58.54 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.45 Total: 23.58 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 2.65 Total: -42.61 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.52 Total: -86.55 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -61.14 2.60 -58.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389241236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.732 kcal (2) G-P(sol) polarization free energy of solvation -61.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds