Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46779 * 2 1 4 4 N 1.46909 * 109.46719 * 240.00760 * 2 1 3 5 5 C 1.46896 * 111.00089 * 84.99843 * 4 2 1 6 6 H 1.08994 * 110.66996 * 36.77877 * 5 4 2 7 7 C 1.54891 * 110.75640 * 273.54601 * 5 4 2 8 8 C 1.54261 * 104.19645 * 203.55980 * 7 5 4 9 9 C 1.53879 * 106.59897 * 23.61035 * 8 7 5 10 10 H 1.09008 * 110.02853 * 240.66734 * 9 8 7 11 11 C 1.50694 * 110.03522 * 119.28385 * 9 8 7 12 12 H 1.08000 * 120.00563 * 241.45323 * 11 9 8 13 13 C 1.37885 * 119.99902 * 61.45487 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.54266 * 106.59785 * 359.97438 * 9 8 7 20 20 C 1.52993 * 109.47307 * 120.00622 * 2 1 3 21 21 C 1.53002 * 117.50225 * 8.74609 * 20 2 1 22 22 C 1.52998 * 117.49882 * 300.08543 * 20 2 1 23 23 H 1.09000 * 109.47380 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47000 * 299.99140 * 1 2 3 25 25 H 1.08994 * 109.47320 * 59.99653 * 1 2 3 26 26 H 1.00901 * 110.99263 * 208.95164 * 4 2 1 27 27 H 1.08993 * 110.48896 * 84.87816 * 7 5 4 28 28 H 1.09007 * 110.48458 * 322.23756 * 7 5 4 29 29 H 1.09002 * 110.03407 * 264.32820 * 8 7 5 30 30 H 1.08999 * 110.07784 * 142.90974 * 8 7 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09000 * 110.48626 * 95.07381 * 19 9 8 33 33 H 1.08999 * 110.48634 * 217.71852 * 19 9 8 34 34 H 1.09007 * 115.55067 * 154.41398 * 20 2 1 35 35 H 1.09002 * 117.49662 * 0.02562 * 21 20 2 36 36 H 1.08995 * 117.50149 * 145.01601 * 21 20 2 37 37 H 1.09003 * 117.49883 * 214.97463 * 22 20 2 38 38 H 1.09000 * 117.49830 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2228 -2.3469 6 1 2.3941 1.2176 -2.0289 7 6 0.7175 0.2824 -3.0769 8 6 1.0730 0.7374 -4.5073 9 6 2.5442 0.3504 -4.7388 10 1 3.1375 1.2422 -4.9412 11 6 2.6493 -0.6120 -5.8937 12 1 3.0459 -1.6040 -5.7356 13 6 2.2390 -0.2261 -7.1522 14 7 1.7556 0.9818 -7.3447 15 14 2.3699 -1.4189 -8.5838 16 1 1.8664 -0.7665 -9.8193 17 1 3.7897 -1.8105 -8.7737 18 1 1.5571 -2.6280 -8.2966 19 6 3.0316 -0.3258 -3.4407 20 6 2.0401 -0.7213 1.2491 21 6 1.0110 -1.4568 2.1100 22 6 1.6342 -0.1509 2.6095 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 2.9173 -1.1204 -1.0289 27 1 0.0601 1.0080 -2.5980 28 1 0.2512 -0.7028 -3.0947 29 1 0.9525 1.8171 -4.5964 30 1 0.4352 0.2298 -5.2309 31 1 1.4674 1.2534 -8.2302 32 1 2.9390 -1.4092 -3.5170 33 1 4.0628 -0.0441 -3.2278 34 1 3.0331 -1.1629 1.1645 35 1 -0.0294 -1.4271 1.7861 36 1 1.3270 -2.3819 2.5919 37 1 2.3599 -0.2176 3.4200 38 1 1.0041 0.7385 2.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393573530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = -8.791528 kcal Electronic energy + Delta-G solvation = -15570.736621 eV Core-core repulsion = 13219.242237 eV Total energy + Delta-G solvation = -2351.494384 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.98117 -38.52553 -35.48283 -33.81020 -30.57966 -29.87448 -27.84439 -25.94441 -24.30644 -23.13955 -21.11649 -20.92669 -20.12114 -18.23153 -17.19676 -16.69387 -16.52519 -16.00197 -15.84026 -14.90946 -14.48971 -14.11833 -14.05253 -13.34809 -13.07519 -12.90124 -12.79473 -12.53435 -12.34011 -12.17565 -12.04195 -11.81874 -11.70494 -11.52290 -11.39803 -11.19986 -10.88592 -10.84707 -10.70319 -10.42284 -9.27211 -8.10157 -6.19936 1.41685 1.43438 1.50831 2.44718 2.86332 3.20342 3.36010 3.77827 4.02831 4.04816 4.14178 4.21813 4.28795 4.35714 4.50172 4.65107 4.72794 4.83228 4.86625 4.95063 4.96290 5.00965 5.08257 5.18917 5.20239 5.25363 5.33116 5.33454 5.46958 5.52151 5.57603 5.69053 5.95436 5.96441 6.31609 6.42886 6.60144 6.91981 7.47077 8.98597 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061778 B = 0.005361 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.124087 B = 5221.645234 C = 5346.716338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.114 3.886 3 H 0.037 0.963 4 N -0.676 5.676 5 C 0.094 3.906 6 H 0.042 0.958 7 C -0.096 4.096 8 C -0.085 4.085 9 C 0.037 3.963 10 H -0.009 1.009 11 C -0.529 4.529 12 H 0.053 0.947 13 C 0.009 3.991 14 N -0.921 5.921 15 Si 0.953 3.047 16 H -0.285 1.285 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.103 4.103 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.170 4.170 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.344 0.656 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -2.410 17.457 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.005 3.995 3 H 0.055 0.945 4 N -0.308 5.308 5 C -0.015 4.015 6 H 0.060 0.940 7 C -0.134 4.134 8 C -0.123 4.123 9 C 0.018 3.982 10 H 0.010 0.990 11 C -0.567 4.567 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.560 5.560 15 Si 0.778 3.222 16 H -0.210 1.210 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.141 4.141 20 C -0.184 4.184 21 C -0.213 4.213 22 C -0.208 4.208 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.163 0.837 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.799 -2.545 17.152 17.432 hybrid contribution 0.833 0.266 -1.106 1.409 sum -0.966 -2.279 16.046 16.236 Atomic orbital electron populations 1.21999 0.94546 1.02156 1.01388 1.21064 0.95952 0.94756 0.87767 0.94492 1.60526 1.33382 1.32991 1.03921 1.22395 0.95679 0.93311 0.90135 0.94048 1.22356 0.96425 1.00243 0.94425 1.21851 0.98652 0.97101 0.94737 1.19202 0.92557 0.94067 0.92359 0.99048 1.21599 1.41485 0.99600 0.94055 0.92917 1.25774 0.95047 0.96725 1.01352 1.70111 1.43476 1.19601 1.22858 0.85693 0.78647 0.79237 0.78589 1.21047 1.19552 1.19639 1.22430 0.97089 1.00067 0.94545 1.22420 0.99884 1.04841 0.91251 1.23158 0.98966 0.96178 1.02987 1.23039 1.03839 0.97721 0.96158 0.92039 0.91391 0.93360 0.83662 0.92188 0.92303 0.96063 0.95085 0.93192 0.92159 0.92988 0.87709 0.88109 0.88356 0.87769 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 7.81 71.98 0.56 -2.83 16 2 C 0.11 2.80 3.01 44.91 0.14 2.93 16 3 H 0.04 0.96 7.49 -2.39 -0.02 0.94 16 4 N -0.68 -19.84 6.22 -462.94 -2.88 -22.72 16 5 C 0.09 3.36 3.18 46.20 0.15 3.50 16 6 H 0.04 1.47 7.54 -2.39 -0.02 1.45 16 7 C -0.10 -3.79 5.37 31.67 0.17 -3.62 16 8 C -0.08 -4.18 5.56 31.32 0.17 -4.00 16 9 C 0.04 1.93 2.84 -10.82 -0.03 1.89 16 10 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 11 C -0.53 -30.04 8.34 25.60 0.21 -29.83 16 12 H 0.05 2.93 7.55 -2.91 -0.02 2.91 16 13 C 0.01 0.54 5.07 84.66 0.43 0.97 16 14 N -0.92 -55.14 12.33 21.45 0.26 -54.87 16 15 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 C -0.10 -4.29 5.79 31.66 0.18 -4.11 16 20 C -0.17 -3.29 5.82 -10.80 -0.06 -3.35 16 21 C -0.18 -3.06 9.57 30.62 0.29 -2.77 16 22 C -0.17 -2.74 9.90 30.62 0.30 -2.44 16 23 H 0.06 1.48 6.97 -2.39 -0.02 1.46 16 24 H 0.07 1.32 7.07 -2.39 -0.02 1.30 16 25 H 0.05 1.29 5.50 -2.39 -0.01 1.27 16 26 H 0.34 9.29 7.95 -89.69 -0.71 8.58 16 27 H 0.06 2.12 6.57 -2.39 -0.02 2.11 16 28 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.03 1.69 7.17 -2.39 -0.02 1.67 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.06 2.56 7.68 -2.39 -0.02 2.54 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 2.02 7.85 -2.38 -0.02 2.00 16 35 H 0.10 1.79 5.85 -2.39 -0.01 1.78 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.50 7.60 -2.39 -0.02 1.48 16 Total: -1.00 -61.12 291.61 2.24 -58.88 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.31 Total: 15.65 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 2.52 Total: -43.64 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.61 Total: -77.59 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.12 2.24 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393573530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.084 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds