Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47496 * 2 1 4 4 N 1.46901 * 109.47142 * 240.00228 * 2 1 3 5 5 C 1.46895 * 111.00255 * 84.99991 * 4 2 1 6 6 H 1.08995 * 110.01568 * 34.93666 * 5 4 2 7 7 C 1.54268 * 110.03401 * 273.54527 * 5 4 2 8 8 C 1.54883 * 104.19781 * 217.10715 * 7 5 4 9 9 C 1.54887 * 102.74816 * 37.93884 * 8 7 5 10 10 H 1.09005 * 110.48404 * 80.87509 * 9 8 7 11 11 C 1.50706 * 110.48465 * 203.37809 * 9 8 7 12 12 H 1.08005 * 119.99758 * 118.55090 * 11 9 8 13 13 C 1.37871 * 120.00102 * 298.54974 * 11 9 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.53875 * 110.03207 * 156.37739 * 5 4 2 20 20 C 1.53002 * 109.47084 * 120.00085 * 2 1 3 21 21 C 1.52996 * 117.49818 * 8.62007 * 20 2 1 22 22 C 1.52997 * 117.49815 * 299.99757 * 20 2 1 23 23 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47285 * 300.00246 * 1 2 3 25 25 H 1.09005 * 109.46744 * 59.99664 * 1 2 3 26 26 H 1.00904 * 110.99829 * 208.95508 * 4 2 1 27 27 H 1.09000 * 110.48503 * 98.42427 * 7 5 4 28 28 H 1.09003 * 110.59818 * 335.84293 * 7 5 4 29 29 H 1.09003 * 110.75338 * 279.62520 * 8 7 5 30 30 H 1.09000 * 110.75600 * 156.26245 * 8 7 5 31 31 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 32 32 H 1.08999 * 110.03056 * 0.02562 * 19 5 4 33 33 H 1.08998 * 110.03135 * 238.56843 * 19 5 4 34 34 H 1.09000 * 115.54957 * 154.33390 * 20 2 1 35 35 H 1.09001 * 117.49945 * 359.97438 * 21 20 2 36 36 H 1.08998 * 117.49962 * 145.01936 * 21 20 2 37 37 H 1.08995 * 117.50406 * 214.97900 * 22 20 2 38 38 H 1.09008 * 117.49976 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 1 2.3633 1.2213 -2.0127 7 6 0.7159 0.2691 -3.0612 8 6 1.0761 0.3751 -4.5638 9 6 2.3166 -0.5444 -4.6836 10 1 2.0120 -1.5887 -4.7542 11 6 3.1471 -0.1566 -5.8799 12 1 4.1656 0.1763 -5.7452 13 6 2.6065 -0.2268 -7.1463 14 7 1.3660 -0.6317 -7.3104 15 14 3.6357 0.2546 -8.6291 16 1 2.8295 0.0910 -9.8654 17 1 4.0600 1.6717 -8.4981 18 1 4.8359 -0.6168 -8.7025 19 6 3.1003 -0.2947 -3.3785 20 6 2.0400 -0.7213 1.2492 21 6 1.0104 -1.4541 2.1116 22 6 1.6357 -0.1495 2.6096 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 2.9173 -1.1205 -1.0287 27 1 0.1484 1.1434 -2.7422 28 1 0.1508 -0.6427 -2.8677 29 1 1.3291 1.4017 -4.8288 30 1 0.2595 0.0052 -5.1838 31 1 0.8316 -0.8814 -6.5404 32 1 3.5472 -1.2249 -3.0279 33 1 3.8754 0.4532 -3.5457 34 1 3.0324 -1.1640 1.1642 35 1 -0.0304 -1.4220 1.7893 36 1 1.3252 -2.3794 2.5941 37 1 2.3619 -0.2165 3.4196 38 1 1.0068 0.7408 2.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393573531.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = -10.342498 kcal Electronic energy + Delta-G solvation = -15615.248565 eV Core-core repulsion = 13263.686925 eV Total energy + Delta-G solvation = -2351.561639 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14796 -38.67736 -35.73882 -33.76127 -30.66560 -29.82343 -27.69513 -25.87669 -24.47475 -23.17590 -21.39226 -20.95322 -20.20756 -18.95552 -17.29780 -16.79153 -16.14690 -15.79963 -15.61243 -15.31475 -14.72436 -14.14495 -13.92829 -13.75787 -12.99498 -12.94842 -12.74327 -12.53858 -12.26861 -12.12743 -11.94091 -11.92031 -11.78186 -11.59917 -11.50969 -11.33956 -11.07689 -10.89477 -10.49722 -10.40108 -9.33697 -8.52788 -6.27327 1.53360 1.61401 1.80471 2.60136 2.81748 3.23698 3.30808 3.72417 3.88794 3.94785 4.02161 4.17513 4.22583 4.28859 4.44534 4.55832 4.65505 4.65892 4.77508 4.81647 4.89811 4.91561 5.00851 5.02249 5.11707 5.16908 5.21399 5.26255 5.29529 5.38680 5.44304 5.50807 5.71507 6.14025 6.22886 6.31161 6.52274 6.71715 7.53398 8.83949 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.070494 B = 0.005307 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.099074 B = 5274.924886 C = 5467.251982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.114 3.886 3 H 0.040 0.960 4 N -0.680 5.680 5 C 0.098 3.902 6 H 0.043 0.957 7 C -0.098 4.098 8 C -0.110 4.110 9 C 0.026 3.974 10 H -0.011 1.011 11 C -0.611 4.611 12 H 0.043 0.957 13 C -0.032 4.032 14 N -0.941 5.941 15 Si 1.112 2.888 16 H -0.285 1.285 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.101 4.101 20 C -0.167 4.167 21 C -0.177 4.177 22 C -0.168 4.168 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.343 0.657 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 1.892 17.835 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.005 3.995 3 H 0.057 0.943 4 N -0.313 5.313 5 C -0.012 4.012 6 H 0.061 0.939 7 C -0.136 4.136 8 C -0.148 4.148 9 C 0.007 3.993 10 H 0.007 0.993 11 C -0.649 4.649 12 H 0.062 0.938 13 C -0.230 4.230 14 N -0.579 5.579 15 Si 0.934 3.066 16 H -0.211 1.211 17 H -0.197 1.197 18 H -0.198 1.198 19 C -0.139 4.139 20 C -0.186 4.186 21 C -0.214 4.214 22 C -0.206 4.206 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.163 0.837 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.431 1.776 16.044 16.148 hybrid contribution 0.711 0.204 1.515 1.686 sum 0.281 1.980 17.559 17.673 Atomic orbital electron populations 1.21982 0.94484 1.02095 1.01453 1.21087 0.95977 0.94798 0.87678 0.94254 1.60668 1.33517 1.33052 1.04030 1.22067 0.95155 0.93503 0.90476 0.93873 1.22393 0.96490 1.00856 0.93848 1.22502 0.98283 0.98861 0.95199 1.19537 0.93340 0.93048 0.93368 0.99264 1.22448 1.00065 1.48418 0.93960 0.93831 1.27180 0.97790 0.94075 1.03931 1.70902 1.09222 1.43096 1.34701 0.83002 0.74001 0.77103 0.72487 1.21058 1.19709 1.19806 1.22199 0.97206 0.99597 0.94919 1.22421 0.99859 1.04954 0.91335 1.23150 0.98934 0.96278 1.03003 1.23029 1.03782 0.97693 0.96048 0.92191 0.91239 0.93359 0.83732 0.91816 0.91780 0.94347 0.94681 0.92521 0.92392 0.93118 0.87851 0.88093 0.88414 0.87744 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 7.79 71.98 0.56 -2.76 16 2 C 0.11 2.77 3.01 44.92 0.14 2.90 16 3 H 0.04 0.99 7.45 -2.39 -0.02 0.98 16 4 N -0.68 -20.11 6.11 -465.78 -2.85 -22.96 16 5 C 0.10 3.43 3.24 45.64 0.15 3.58 16 6 H 0.04 1.46 7.46 -2.39 -0.02 1.44 16 7 C -0.10 -3.72 4.88 31.67 0.15 -3.57 16 8 C -0.11 -5.29 5.54 31.88 0.18 -5.12 16 9 C 0.03 1.34 2.44 -10.46 -0.03 1.31 16 10 H -0.01 -0.62 8.06 -2.38 -0.02 -0.64 16 11 C -0.61 -35.25 8.49 25.60 0.22 -35.03 16 12 H 0.04 2.47 7.58 -2.91 -0.02 2.45 16 13 C -0.03 -1.84 5.33 84.65 0.45 -1.39 16 14 N -0.94 -58.53 13.41 21.45 0.29 -58.24 16 15 Si 1.11 51.18 29.90 68.60 2.05 53.23 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.10 -4.24 6.04 31.32 0.19 -4.05 16 20 C -0.17 -3.34 5.82 -10.80 -0.06 -3.40 16 21 C -0.18 -3.09 9.57 30.59 0.29 -2.80 16 22 C -0.17 -2.68 9.90 30.59 0.30 -2.37 16 23 H 0.06 1.44 6.98 -2.39 -0.02 1.43 16 24 H 0.07 1.31 7.07 -2.39 -0.02 1.30 16 25 H 0.05 1.25 5.84 -2.38 -0.01 1.23 16 26 H 0.34 9.51 7.49 -89.69 -0.67 8.84 16 27 H 0.06 2.16 7.36 -2.39 -0.02 2.14 16 28 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 29 H 0.04 1.92 8.05 -2.39 -0.02 1.90 16 30 H 0.03 1.81 6.31 -2.39 -0.02 1.80 16 31 H 0.26 16.45 5.24 -92.71 -0.49 15.97 16 32 H 0.06 2.29 7.49 -2.39 -0.02 2.27 16 33 H 0.05 2.15 7.68 -2.39 -0.02 2.13 16 34 H 0.10 2.03 7.85 -2.39 -0.02 2.01 16 35 H 0.10 1.80 5.85 -2.39 -0.01 1.79 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.48 7.61 -2.38 -0.02 1.46 16 Total: -1.00 -63.85 288.49 2.68 -61.18 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.64 Total: 19.48 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 2.54 Total: -52.70 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.56 Total: -81.20 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -63.85 2.68 -61.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393573531.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.834 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds