Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47203 * 2 1 4 4 N 1.46906 * 109.47002 * 240.00070 * 2 1 3 5 5 C 1.46900 * 110.99490 * 85.00261 * 4 2 1 6 6 H 1.08994 * 110.06179 * 326.41349 * 5 4 2 7 7 C 1.54268 * 110.03464 * 87.83613 * 5 4 2 8 8 C 1.54882 * 104.19992 * 142.88904 * 7 5 4 9 9 C 1.54897 * 102.74839 * 322.05790 * 8 7 5 10 10 H 1.08996 * 110.48675 * 279.26281 * 9 8 7 11 11 C 1.50698 * 110.48645 * 156.62027 * 9 8 7 12 12 H 1.08001 * 120.00196 * 241.45645 * 11 9 8 13 13 C 1.37878 * 120.00054 * 61.44993 * 11 9 8 14 14 N 1.31512 * 120.00225 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99899 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47181 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47414 * 120.00520 * 15 13 11 18 18 H 1.48503 * 109.47023 * 240.00544 * 15 13 11 19 19 C 1.53876 * 110.02841 * 204.99881 * 5 4 2 20 20 C 1.52998 * 109.47062 * 120.00369 * 2 1 3 21 21 C 1.53005 * 117.49761 * 8.62139 * 20 2 1 22 22 C 1.52999 * 117.49741 * 299.99764 * 20 2 1 23 23 H 1.08997 * 109.47255 * 299.99962 * 1 2 3 24 24 H 1.09007 * 109.46889 * 59.99737 * 1 2 3 25 25 H 1.09000 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.00898 * 110.99978 * 321.05213 * 4 2 1 27 27 H 1.09003 * 110.48471 * 24.21212 * 7 5 4 28 28 H 1.09004 * 110.48268 * 261.56978 * 7 5 4 29 29 H 1.08994 * 110.76048 * 203.74464 * 8 7 5 30 30 H 1.09004 * 110.75771 * 80.36858 * 8 7 5 31 31 H 0.97000 * 120.00129 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.03805 * 121.43475 * 19 5 4 33 33 H 1.09000 * 110.07667 * 0.02562 * 19 5 4 34 34 H 1.08998 * 115.54887 * 154.32931 * 20 2 1 35 35 H 1.08997 * 117.49952 * 359.97438 * 21 20 2 36 36 H 1.08998 * 117.49840 * 145.02370 * 21 20 2 37 37 H 1.08991 * 117.50070 * 214.97517 * 22 20 2 38 38 H 1.09005 * 117.49943 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2760 0.9534 -2.2868 7 6 3.4467 0.9424 -2.3748 8 6 3.7915 1.0447 -3.8813 9 6 3.2815 -0.3065 -4.4412 10 1 4.0075 -1.0968 -4.2504 11 6 2.9991 -0.1930 -5.9171 12 1 1.9989 -0.3576 -6.2898 13 6 4.0177 0.1213 -6.7917 14 7 5.2357 0.3214 -6.3380 15 14 3.6674 0.2627 -8.6211 16 1 2.2290 -0.0076 -8.8721 17 1 4.0023 1.6331 -9.0848 18 1 4.4927 -0.7257 -9.3610 19 6 1.9774 -0.5713 -3.6607 20 6 2.0400 -0.7213 1.2492 21 6 1.0103 -1.4542 2.1116 22 6 1.6357 -0.1496 2.6095 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 4.1993 0.3537 -1.8503 28 1 3.3629 1.9359 -1.9342 29 1 4.8675 1.1411 -4.0256 30 1 3.2624 1.8784 -4.3429 31 1 5.9523 0.5421 -6.9533 32 1 1.1200 -0.2260 -4.2383 33 1 1.8794 -1.6358 -3.4478 34 1 3.0323 -1.1641 1.1641 35 1 -0.0304 -1.4221 1.7892 36 1 1.3252 -2.3795 2.5940 37 1 2.3618 -0.2167 3.4196 38 1 1.0061 0.7402 2.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393573535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = 6.349921 kcal Electronic energy + Delta-G solvation = -15527.983686 eV Core-core repulsion = 13177.145884 eV Total energy + Delta-G solvation = -2350.837802 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81518 -37.10309 -33.99957 -32.03250 -29.06221 -28.05347 -26.18522 -24.08773 -23.37526 -22.34296 -19.57076 -19.15284 -18.78640 -16.51831 -16.10450 -15.24127 -14.63289 -14.47553 -14.05598 -13.50323 -13.41217 -12.68009 -12.26226 -12.07205 -11.78712 -11.71662 -11.34658 -11.02766 -10.96351 -10.67219 -10.55524 -10.32213 -10.30838 -9.94288 -9.88854 -9.77308 -9.44502 -9.08157 -8.67603 -8.29494 -7.95517 -5.93691 -3.96502 3.32929 3.40953 3.44603 3.79951 4.41797 4.49203 4.84809 4.91959 5.11205 5.23543 5.34324 5.37974 5.43266 5.59143 5.65537 5.73757 5.80315 5.86301 6.02562 6.04885 6.07669 6.23483 6.30531 6.47931 6.57922 6.74142 6.81501 6.96147 7.12475 7.29718 7.44102 7.66232 7.78576 7.87663 7.98835 8.14512 8.53681 9.06470 9.67095 11.15379 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067741 B = 0.005259 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.238868 B = 5323.153835 C = 5492.205734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.112 3.888 3 H 0.079 0.921 4 N -0.676 5.676 5 C 0.084 3.916 6 H 0.033 0.967 7 C -0.116 4.116 8 C -0.098 4.098 9 C 0.052 3.948 10 H 0.029 0.971 11 C -0.513 4.513 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.117 4.117 20 C -0.132 4.132 21 C -0.190 4.190 22 C -0.184 4.184 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.336 0.664 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.258 0.742 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -0.484 13.840 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.002 3.998 3 H 0.097 0.903 4 N -0.306 5.306 5 C -0.025 4.025 6 H 0.051 0.949 7 C -0.155 4.155 8 C -0.137 4.137 9 C 0.034 3.966 10 H 0.047 0.953 11 C -0.552 4.552 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.227 4.227 22 C -0.222 4.222 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.155 0.845 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.592 -0.361 13.923 15.409 hybrid contribution -1.105 0.234 -1.182 1.635 sum -7.697 -0.128 12.741 14.886 Atomic orbital electron populations 1.22623 0.97914 1.01928 1.01780 1.21036 0.91638 0.97517 0.89641 0.90328 1.60734 1.56679 1.09551 1.03658 1.22288 0.97067 0.93423 0.89695 0.94934 1.22525 0.96018 0.97350 0.99568 1.22398 1.01425 0.99604 0.90269 1.19373 0.90551 0.93457 0.93264 0.95273 1.21274 0.94825 1.47273 0.91795 0.92820 1.24973 0.95158 0.95391 0.98413 1.69977 1.00311 1.48180 1.34309 0.86622 0.78281 0.77565 0.86024 1.19897 1.21129 1.21110 1.22467 1.01466 0.97575 0.93998 1.22382 0.99721 1.02615 0.90346 1.23118 0.99101 0.95746 1.04704 1.22927 1.03977 0.97409 0.97841 0.92487 0.92642 0.92172 0.84494 0.91691 0.94390 0.91324 0.93780 0.93235 0.92908 0.93368 0.87118 0.88531 0.89339 0.89119 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 7.74 37.16 0.29 -1.81 16 2 C 0.11 1.47 2.83 -67.71 -0.19 1.28 16 3 H 0.08 1.11 7.77 -51.93 -0.40 0.71 16 4 N -0.68 -10.54 6.01 -98.57 -0.59 -11.14 16 5 C 0.08 1.53 3.02 -66.59 -0.20 1.33 16 6 H 0.03 0.58 7.17 -51.93 -0.37 0.21 16 7 C -0.12 -2.31 6.40 -25.07 -0.16 -2.47 16 8 C -0.10 -2.36 5.61 -24.74 -0.14 -2.50 16 9 C 0.05 1.32 2.79 -90.11 -0.25 1.07 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.51 -14.31 8.49 -34.44 -0.29 -14.60 16 12 H 0.05 1.48 7.58 -52.49 -0.40 1.08 16 13 C 0.06 1.74 5.33 -17.82 -0.09 1.65 16 14 N -0.89 -25.93 12.01 55.43 0.67 -25.26 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.12 -2.44 6.04 -25.61 -0.15 -2.60 16 20 C -0.13 -1.57 6.01 -90.62 -0.54 -2.11 16 21 C -0.19 -1.92 9.57 -26.73 -0.26 -2.17 16 22 C -0.18 -1.84 9.90 -26.73 -0.26 -2.11 16 23 H 0.06 0.58 7.07 -51.93 -0.37 0.21 16 24 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 25 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 26 H 0.34 5.01 7.75 -39.29 -0.30 4.70 16 27 H 0.06 1.31 8.05 -51.93 -0.42 0.90 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.79 7.37 -51.93 -0.38 1.41 16 30 H 0.04 1.08 8.05 -51.93 -0.42 0.67 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.11 7.68 -51.93 -0.40 0.71 16 33 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16 34 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.10 0.93 5.85 -51.93 -0.30 0.63 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.86 7.61 -51.93 -0.39 0.46 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -1.00 -28.13 295.47 -9.31 -37.44 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.55 Total: 3.03 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -2.26 Total: -25.03 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.07 Total: -36.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.13 -9.31 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393573535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.789 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds