Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47203 * 2 1 4 4 N 1.46906 * 109.47002 * 240.00070 * 2 1 3 5 5 C 1.46900 * 110.99490 * 85.00261 * 4 2 1 6 6 H 1.08994 * 110.06179 * 326.41349 * 5 4 2 7 7 C 1.54268 * 110.03464 * 87.83613 * 5 4 2 8 8 C 1.54882 * 104.19992 * 142.88904 * 7 5 4 9 9 C 1.54897 * 102.74839 * 322.05790 * 8 7 5 10 10 H 1.08996 * 110.48675 * 279.26281 * 9 8 7 11 11 C 1.50698 * 110.48645 * 156.62027 * 9 8 7 12 12 H 1.08001 * 120.00196 * 241.45645 * 11 9 8 13 13 C 1.37878 * 120.00054 * 61.44993 * 11 9 8 14 14 N 1.31512 * 120.00225 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99899 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47181 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47414 * 120.00520 * 15 13 11 18 18 H 1.48503 * 109.47023 * 240.00544 * 15 13 11 19 19 C 1.53876 * 110.02841 * 204.99881 * 5 4 2 20 20 C 1.52998 * 109.47062 * 120.00369 * 2 1 3 21 21 C 1.53005 * 117.49761 * 8.62139 * 20 2 1 22 22 C 1.52999 * 117.49741 * 299.99764 * 20 2 1 23 23 H 1.08997 * 109.47255 * 299.99962 * 1 2 3 24 24 H 1.09007 * 109.46889 * 59.99737 * 1 2 3 25 25 H 1.09000 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.00898 * 110.99978 * 321.05213 * 4 2 1 27 27 H 1.09003 * 110.48471 * 24.21212 * 7 5 4 28 28 H 1.09004 * 110.48268 * 261.56978 * 7 5 4 29 29 H 1.08994 * 110.76048 * 203.74464 * 8 7 5 30 30 H 1.09004 * 110.75771 * 80.36858 * 8 7 5 31 31 H 0.97000 * 120.00129 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.03805 * 121.43475 * 19 5 4 33 33 H 1.09000 * 110.07667 * 0.02562 * 19 5 4 34 34 H 1.08998 * 115.54887 * 154.32931 * 20 2 1 35 35 H 1.08997 * 117.49952 * 359.97438 * 21 20 2 36 36 H 1.08998 * 117.49840 * 145.02370 * 21 20 2 37 37 H 1.08991 * 117.50070 * 214.97517 * 22 20 2 38 38 H 1.09005 * 117.49943 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2760 0.9534 -2.2868 7 6 3.4467 0.9424 -2.3748 8 6 3.7915 1.0447 -3.8813 9 6 3.2815 -0.3065 -4.4412 10 1 4.0075 -1.0968 -4.2504 11 6 2.9991 -0.1930 -5.9171 12 1 1.9989 -0.3576 -6.2898 13 6 4.0177 0.1213 -6.7917 14 7 5.2357 0.3214 -6.3380 15 14 3.6674 0.2627 -8.6211 16 1 2.2290 -0.0076 -8.8721 17 1 4.0023 1.6331 -9.0848 18 1 4.4927 -0.7257 -9.3610 19 6 1.9774 -0.5713 -3.6607 20 6 2.0400 -0.7213 1.2492 21 6 1.0103 -1.4542 2.1116 22 6 1.6357 -0.1496 2.6095 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 4.1993 0.3537 -1.8503 28 1 3.3629 1.9359 -1.9342 29 1 4.8675 1.1411 -4.0256 30 1 3.2624 1.8784 -4.3429 31 1 5.9523 0.5421 -6.9533 32 1 1.1200 -0.2260 -4.2383 33 1 1.8794 -1.6358 -3.4478 34 1 3.0323 -1.1641 1.1641 35 1 -0.0304 -1.4221 1.7892 36 1 1.3252 -2.3795 2.5940 37 1 2.3618 -0.2167 3.4196 38 1 1.0061 0.7402 2.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393573535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = -9.282355 kcal Electronic energy + Delta-G solvation = -15528.661552 eV Core-core repulsion = 13177.145884 eV Total energy + Delta-G solvation = -2351.515668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99771 -38.50572 -35.49873 -33.89131 -30.37802 -29.86854 -27.71088 -25.71222 -24.76411 -23.13568 -21.24026 -20.64637 -20.10832 -18.52014 -17.15229 -16.65276 -16.53105 -15.64027 -15.39308 -15.04501 -14.79109 -14.19076 -13.88117 -13.44413 -13.09084 -12.97617 -12.74024 -12.64484 -12.44488 -12.24140 -12.03345 -11.79303 -11.71726 -11.51261 -11.41319 -11.16186 -10.90389 -10.75968 -10.73187 -10.43744 -9.21125 -8.09230 -6.19858 1.40439 1.41912 1.53445 2.44574 2.92992 3.20646 3.32346 3.92661 3.99101 4.08282 4.12493 4.23604 4.33554 4.41015 4.44201 4.56056 4.74867 4.82412 4.84785 4.95036 5.00110 5.00746 5.10550 5.11340 5.24392 5.28486 5.33464 5.36821 5.42357 5.46210 5.55842 5.67493 5.95470 6.03481 6.31942 6.42536 6.62794 6.92041 7.47649 8.99311 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067741 B = 0.005259 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.238868 B = 5323.153835 C = 5492.205734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.113 3.887 3 H 0.068 0.932 4 N -0.681 5.681 5 C 0.099 3.901 6 H 0.045 0.955 7 C -0.105 4.105 8 C -0.092 4.092 9 C 0.042 3.958 10 H -0.007 1.007 11 C -0.533 4.533 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.953 3.047 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.108 4.108 20 C -0.151 4.151 21 C -0.180 4.180 22 C -0.174 4.174 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.342 0.658 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -0.367 14.838 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.003 3.997 3 H 0.087 0.913 4 N -0.313 5.313 5 C -0.011 4.011 6 H 0.063 0.937 7 C -0.143 4.143 8 C -0.131 4.131 9 C 0.024 3.976 10 H 0.011 0.989 11 C -0.571 4.571 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.779 3.221 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.146 4.146 20 C -0.170 4.170 21 C -0.217 4.217 22 C -0.211 4.211 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.312 -0.252 14.937 17.096 hybrid contribution -0.536 0.171 -1.460 1.565 sum -8.848 -0.081 13.477 16.122 Atomic orbital electron populations 1.22547 0.96239 1.02573 1.02216 1.21050 0.92938 0.96806 0.88864 0.91340 1.60638 1.57699 1.09476 1.03476 1.21990 0.96198 0.93479 0.89385 0.93688 1.22393 0.96915 0.98756 0.96264 1.22192 0.99147 0.98390 0.93337 1.19359 0.92083 0.92998 0.93184 0.98883 1.21650 0.94881 1.47224 0.93378 0.92890 1.25783 0.94947 0.95061 1.02987 1.70114 1.01154 1.48869 1.35818 0.85576 0.78435 0.77605 0.80464 1.19018 1.20631 1.20708 1.22311 0.98734 0.98700 0.94852 1.22232 0.99637 1.04314 0.90824 1.23187 0.98941 0.96112 1.03458 1.23012 1.03841 0.97734 0.96506 0.90838 0.93405 0.91408 0.83822 0.92338 0.92330 0.94400 0.94921 0.93188 0.92998 0.92499 0.88767 0.87695 0.88699 0.88291 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 7.74 71.98 0.56 -2.97 16 2 C 0.11 2.74 2.83 44.91 0.13 2.87 16 3 H 0.07 1.80 7.77 -2.39 -0.02 1.78 16 4 N -0.68 -20.29 6.01 -465.76 -2.80 -23.09 16 5 C 0.10 3.48 3.02 45.64 0.14 3.62 16 6 H 0.05 1.50 7.17 -2.39 -0.02 1.48 16 7 C -0.11 -4.13 6.40 31.67 0.20 -3.92 16 8 C -0.09 -4.52 5.61 31.89 0.18 -4.35 16 9 C 0.04 2.21 2.79 -10.46 -0.03 2.18 16 10 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 11 C -0.53 -30.20 8.49 25.60 0.22 -29.98 16 12 H 0.05 2.93 7.58 -2.91 -0.02 2.91 16 13 C 0.01 0.61 5.33 84.66 0.45 1.06 16 14 N -0.92 -55.03 12.01 21.45 0.26 -54.77 16 15 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 C -0.11 -4.47 6.04 31.32 0.19 -4.28 16 20 C -0.15 -3.31 6.01 -10.79 -0.06 -3.37 16 21 C -0.18 -3.13 9.57 30.60 0.29 -2.84 16 22 C -0.17 -3.00 9.90 30.60 0.30 -2.69 16 23 H 0.07 1.23 7.07 -2.39 -0.02 1.22 16 24 H 0.05 1.03 7.47 -2.38 -0.02 1.02 16 25 H 0.07 1.25 6.97 -2.39 -0.02 1.24 16 26 H 0.34 9.59 7.75 -89.70 -0.70 8.90 16 27 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.04 2.05 7.37 -2.39 -0.02 2.03 16 30 H 0.03 1.63 8.05 -2.38 -0.02 1.61 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.05 2.14 7.68 -2.39 -0.02 2.12 16 33 H 0.06 2.22 7.47 -2.39 -0.02 2.20 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.10 1.66 5.85 -2.39 -0.01 1.65 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.55 7.61 -2.38 -0.02 1.53 16 Total: -1.00 -60.95 295.47 2.37 -58.58 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.32 Total: 17.47 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 2.56 Total: -44.69 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.54 Total: -77.86 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.95 2.37 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393573535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.294 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds