Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00251 * 2 1 4 4 H 1.09000 * 109.46940 * 4.99434 * 3 2 1 5 5 C 1.52996 * 109.47275 * 124.99619 * 3 2 1 6 6 N 1.46901 * 109.46882 * 244.99820 * 3 2 1 7 7 C 1.46854 * 111.00034 * 69.99757 * 6 3 2 8 8 C 1.53029 * 109.52283 * 174.15832 * 7 6 3 9 9 C 1.53126 * 109.27795 * 59.18140 * 8 7 6 10 10 C 1.52998 * 109.52128 * 182.44116 * 9 8 7 11 11 C 1.50699 * 109.47169 * 184.99691 * 10 9 8 12 12 H 1.08001 * 119.99784 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00130 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99765 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47172 * 90.00417 * 15 13 11 17 17 H 1.48506 * 109.46884 * 210.00073 * 15 13 11 18 18 H 1.48499 * 109.47239 * 330.00114 * 15 13 11 19 19 C 1.53124 * 109.15878 * 302.34185 * 9 8 7 20 20 C 1.46843 * 111.00022 * 305.78878 * 6 3 2 21 21 H 1.07998 * 119.99649 * 180.02562 * 1 2 3 22 22 H 1.07994 * 119.99799 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.00092 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46879 * 179.97438 * 5 3 2 25 25 H 1.08998 * 109.47302 * 299.99706 * 5 3 2 26 26 H 1.09000 * 109.47363 * 60.00579 * 5 3 2 27 27 H 1.08999 * 109.45788 * 54.14266 * 7 6 3 28 28 H 1.09003 * 109.45264 * 294.17148 * 7 6 3 29 29 H 1.08994 * 109.50822 * 299.23828 * 8 7 6 30 30 H 1.09001 * 109.50199 * 179.11868 * 8 7 6 31 31 H 1.08998 * 109.52297 * 62.25132 * 9 8 7 32 32 H 1.09000 * 109.47277 * 304.99549 * 10 9 8 33 33 H 1.09002 * 109.47758 * 64.99432 * 10 9 8 34 34 H 0.97000 * 120.00018 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.50088 * 177.59509 * 19 9 8 36 36 H 1.09004 * 109.50324 * 297.71684 * 19 9 8 37 37 H 1.09001 * 109.45906 * 305.85080 * 20 6 3 38 38 H 1.08997 * 109.46476 * 65.82626 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3586 2.1316 0.0895 5 6 3.0350 1.3331 1.1816 6 7 2.8153 1.4364 -1.2552 7 6 1.9096 1.6513 -2.3911 8 6 2.7292 1.9280 -3.6534 9 6 3.6503 0.7363 -3.9294 10 6 4.5161 1.0326 -5.1556 11 6 5.3333 -0.1859 -5.4999 12 1 5.2437 -1.0821 -4.9039 13 6 6.1944 -0.1569 -6.5762 14 7 6.3031 0.9342 -7.3022 15 14 7.2068 -1.6676 -7.0033 16 1 6.4467 -2.5210 -7.9515 17 1 8.4844 -1.2458 -7.6319 18 1 7.4941 -2.4369 -5.7660 19 6 4.5497 0.5038 -2.7122 20 6 3.6773 0.2684 -1.4771 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5399 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 3.5804 2.2769 1.1813 25 1 2.4772 1.2357 2.1130 26 1 3.7400 0.5066 1.0921 27 1 1.2631 2.5040 -2.1836 28 1 1.2993 0.7609 -2.5422 29 1 3.3296 2.8260 -3.5080 30 1 2.0571 2.0720 -4.4994 31 1 3.0490 -0.1539 -4.1135 32 1 3.8755 1.2906 -5.9990 33 1 5.1825 1.8671 -4.9370 34 1 6.9087 0.9545 -8.0596 35 1 5.1782 -0.3697 -2.8856 36 1 5.1787 1.3795 -2.5519 37 1 4.3146 0.1167 -0.6059 38 1 3.0585 -0.6153 -1.6326 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399423711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 0.157881 kcal Electronic energy + Delta-G solvation = -15729.305980 eV Core-core repulsion = 13378.199671 eV Total energy + Delta-G solvation = -2351.106309 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22358 -35.82041 -33.07396 -31.70411 -30.53899 -29.65407 -27.23566 -24.07557 -22.81016 -22.20770 -20.88737 -19.50505 -18.51716 -16.32062 -16.04794 -14.86609 -14.57408 -14.30312 -14.15741 -13.65909 -13.35192 -12.92954 -12.66893 -12.13173 -12.00999 -11.78703 -11.49566 -11.30877 -11.11736 -10.91136 -10.75810 -10.54696 -10.51741 -10.22589 -9.88147 -9.58242 -9.41512 -8.98693 -8.82832 -8.29294 -7.99951 -5.94197 -3.95476 2.18224 3.34394 3.40770 3.43741 4.19613 4.50083 4.73139 5.02232 5.24344 5.36162 5.39568 5.41577 5.54961 5.64794 5.71190 5.76035 5.82243 5.95653 5.98487 6.09101 6.14435 6.24441 6.33368 6.48008 6.53456 6.58435 6.68922 6.75244 7.04300 7.16542 7.25306 7.43023 7.46839 7.74649 7.91881 8.07057 8.50359 9.11169 9.67778 11.17212 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044668 B = 0.005927 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.694310 B = 4723.159230 C = 4882.206040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.179 4.179 3 C 0.104 3.896 4 H 0.080 0.920 5 C -0.140 4.140 6 N -0.524 5.524 7 C 0.059 3.941 8 C -0.112 4.112 9 C -0.081 4.081 10 C 0.028 3.972 11 C -0.513 4.513 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.888 3.112 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.100 4.100 20 C 0.052 3.948 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.013 0.987 33 H 0.017 0.983 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 0.147 14.306 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.199 4.199 3 C -0.004 4.004 4 H 0.098 0.902 5 C -0.197 4.197 6 N -0.248 5.248 7 C -0.069 4.069 8 C -0.150 4.150 9 C -0.099 4.099 10 C -0.009 4.009 11 C -0.552 4.552 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.138 4.138 20 C -0.075 4.075 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.125 0.875 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.579 0.650 14.185 16.590 hybrid contribution 0.007 -1.632 -0.464 1.697 sum -8.572 -0.982 13.721 16.209 Atomic orbital electron populations 1.23815 0.95927 1.01571 1.01236 1.23743 0.96579 1.00121 0.99419 1.20937 0.94520 0.93780 0.91185 0.90201 1.21796 0.99029 1.02741 0.96141 1.62290 1.21053 1.40046 1.01398 1.22088 0.94157 0.99366 0.91256 1.21692 0.98292 1.00119 0.94874 1.21224 0.96092 0.95806 0.96806 1.19119 0.93933 0.96814 0.91061 1.21262 1.22833 0.98831 1.12253 0.92753 1.25014 0.97172 0.95842 0.96458 1.69965 1.37944 1.27063 1.18640 0.86659 0.79783 0.83392 0.78541 1.20803 1.21297 1.19943 1.21555 0.97434 1.02367 0.92423 1.22248 0.95422 0.90557 0.99308 0.88811 0.88715 0.87456 0.91646 0.92652 0.92386 0.91941 0.95203 0.91666 0.92255 0.93173 0.96821 0.96508 0.93126 0.91027 0.91930 0.91420 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 14.32 29.01 0.42 -1.54 16 2 C -0.18 -2.08 6.91 -36.02 -0.25 -2.33 16 3 C 0.10 1.27 2.69 -68.87 -0.19 1.08 16 4 H 0.08 0.93 7.64 -51.93 -0.40 0.53 16 5 C -0.14 -1.50 9.10 37.16 0.34 -1.17 16 6 N -0.52 -7.80 4.60 -228.08 -1.05 -8.85 16 7 C 0.06 0.90 5.19 -3.83 -0.02 0.88 16 8 C -0.11 -2.01 5.38 -26.65 -0.14 -2.15 16 9 C -0.08 -1.69 2.20 -90.49 -0.20 -1.89 16 10 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 11 C -0.51 -14.50 8.44 -34.44 -0.29 -14.80 16 12 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 20 C 0.05 0.82 4.71 -3.83 -0.02 0.80 16 21 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 22 H 0.09 0.91 7.84 -52.49 -0.41 0.50 16 23 H 0.11 1.28 7.26 -52.48 -0.38 0.90 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 27 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16 28 H 0.03 0.47 7.60 -51.93 -0.39 0.07 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.98 6.21 -51.93 -0.32 0.65 16 38 H 0.03 0.46 6.79 -51.93 -0.35 0.11 16 LS Contribution 296.17 15.07 4.46 4.46 Total: -1.00 -29.54 296.17 -8.27 -37.81 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.69 Total: -2.69 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -0.71 Total: -21.05 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.31 Total: -35.35 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.54 -8.27 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399423711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.967 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds