Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00251 * 2 1 4 4 H 1.09000 * 109.46940 * 4.99434 * 3 2 1 5 5 C 1.52996 * 109.47275 * 124.99619 * 3 2 1 6 6 N 1.46901 * 109.46882 * 244.99820 * 3 2 1 7 7 C 1.46854 * 111.00034 * 69.99757 * 6 3 2 8 8 C 1.53029 * 109.52283 * 174.15832 * 7 6 3 9 9 C 1.53126 * 109.27795 * 59.18140 * 8 7 6 10 10 C 1.52998 * 109.52128 * 182.44116 * 9 8 7 11 11 C 1.50699 * 109.47169 * 184.99691 * 10 9 8 12 12 H 1.08001 * 119.99784 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00130 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99765 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47172 * 90.00417 * 15 13 11 17 17 H 1.48506 * 109.46884 * 210.00073 * 15 13 11 18 18 H 1.48499 * 109.47239 * 330.00114 * 15 13 11 19 19 C 1.53124 * 109.15878 * 302.34185 * 9 8 7 20 20 C 1.46843 * 111.00022 * 305.78878 * 6 3 2 21 21 H 1.07998 * 119.99649 * 180.02562 * 1 2 3 22 22 H 1.07994 * 119.99799 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.00092 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46879 * 179.97438 * 5 3 2 25 25 H 1.08998 * 109.47302 * 299.99706 * 5 3 2 26 26 H 1.09000 * 109.47363 * 60.00579 * 5 3 2 27 27 H 1.08999 * 109.45788 * 54.14266 * 7 6 3 28 28 H 1.09003 * 109.45264 * 294.17148 * 7 6 3 29 29 H 1.08994 * 109.50822 * 299.23828 * 8 7 6 30 30 H 1.09001 * 109.50199 * 179.11868 * 8 7 6 31 31 H 1.08998 * 109.52297 * 62.25132 * 9 8 7 32 32 H 1.09000 * 109.47277 * 304.99549 * 10 9 8 33 33 H 1.09002 * 109.47758 * 64.99432 * 10 9 8 34 34 H 0.97000 * 120.00018 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.50088 * 177.59509 * 19 9 8 36 36 H 1.09004 * 109.50324 * 297.71684 * 19 9 8 37 37 H 1.09001 * 109.45906 * 305.85080 * 20 6 3 38 38 H 1.08997 * 109.46476 * 65.82626 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3586 2.1316 0.0895 5 6 3.0350 1.3331 1.1816 6 7 2.8153 1.4364 -1.2552 7 6 1.9096 1.6513 -2.3911 8 6 2.7292 1.9280 -3.6534 9 6 3.6503 0.7363 -3.9294 10 6 4.5161 1.0326 -5.1556 11 6 5.3333 -0.1859 -5.4999 12 1 5.2437 -1.0821 -4.9039 13 6 6.1944 -0.1569 -6.5762 14 7 6.3031 0.9342 -7.3022 15 14 7.2068 -1.6676 -7.0033 16 1 6.4467 -2.5210 -7.9515 17 1 8.4844 -1.2458 -7.6319 18 1 7.4941 -2.4369 -5.7660 19 6 4.5497 0.5038 -2.7122 20 6 3.6773 0.2684 -1.4771 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5399 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 3.5804 2.2769 1.1813 25 1 2.4772 1.2357 2.1130 26 1 3.7400 0.5066 1.0921 27 1 1.2631 2.5040 -2.1836 28 1 1.2993 0.7609 -2.5422 29 1 3.3296 2.8260 -3.5080 30 1 2.0571 2.0720 -4.4994 31 1 3.0490 -0.1539 -4.1135 32 1 3.8755 1.2906 -5.9990 33 1 5.1825 1.8671 -4.9370 34 1 6.9087 0.9545 -8.0596 35 1 5.1782 -0.3697 -2.8856 36 1 5.1787 1.3795 -2.5519 37 1 4.3146 0.1167 -0.6059 38 1 3.0585 -0.6153 -1.6326 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399423711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = -17.096001 kcal Electronic energy + Delta-G solvation = -15730.054165 eV Core-core repulsion = 13378.199671 eV Total energy + Delta-G solvation = -2351.854493 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46694 -37.22682 -34.92275 -33.14404 -31.88425 -30.84469 -28.96926 -25.82032 -24.19933 -23.37917 -22.34840 -20.84793 -19.79459 -18.42821 -17.27619 -16.52137 -15.97944 -15.38455 -15.37691 -15.07933 -14.80204 -14.47064 -14.13010 -13.71652 -13.29631 -13.16792 -12.89956 -12.71918 -12.63214 -12.40572 -12.27421 -12.07684 -11.99992 -11.73395 -11.59673 -11.24707 -10.86024 -10.71833 -10.51471 -10.32613 -9.15542 -8.17019 -6.26796 1.35139 1.39388 1.40640 1.51577 2.41925 3.06653 3.16154 3.84197 4.03035 4.04488 4.13732 4.22131 4.36953 4.47592 4.55972 4.64373 4.66078 4.79594 4.82181 4.91941 4.94699 4.96786 5.08345 5.19056 5.23109 5.33615 5.38864 5.45074 5.46623 5.58172 5.69742 5.76019 5.83139 5.89890 6.22572 6.29426 6.33766 6.89211 7.41552 8.95020 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044668 B = 0.005927 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.694310 B = 4723.159230 C = 4882.206040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.196 4.196 3 C 0.105 3.895 4 H 0.090 0.910 5 C -0.137 4.137 6 N -0.535 5.535 7 C 0.068 3.932 8 C -0.108 4.108 9 C -0.073 4.073 10 C 0.034 3.966 11 C -0.530 4.530 12 H 0.059 0.941 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.263 1.263 19 C -0.095 4.095 20 C 0.064 3.936 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.045 0.955 32 H -0.015 1.015 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -0.830 15.921 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.216 4.216 3 C -0.002 4.002 4 H 0.108 0.892 5 C -0.194 4.194 6 N -0.258 5.258 7 C -0.060 4.060 8 C -0.146 4.146 9 C -0.092 4.092 10 C -0.004 4.004 11 C -0.568 4.568 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.133 4.133 20 C -0.063 4.063 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.003 0.997 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.473 -0.331 15.822 18.444 hybrid contribution 0.240 -1.281 -0.972 1.627 sum -9.232 -1.612 14.849 17.559 Atomic orbital electron populations 1.24013 0.95592 1.02609 0.99102 1.23662 0.97020 0.99542 1.01358 1.21006 0.94782 0.94553 0.89893 0.89194 1.21781 0.98862 1.02329 0.96427 1.62254 1.21624 1.39559 1.02396 1.21973 0.93733 1.00306 0.89954 1.21606 0.97957 0.98151 0.96839 1.21069 0.95993 0.96876 0.95272 1.19011 0.93583 0.95285 0.92472 1.21645 1.23158 0.99533 1.12455 0.92249 1.25959 0.98477 0.99155 0.96332 1.70105 1.38871 1.29423 1.19248 0.85508 0.77944 0.79319 0.78659 1.19914 1.20848 1.18698 1.21433 0.97402 1.00925 0.93509 1.22056 0.95317 0.91074 0.97875 0.87840 0.87648 0.87972 0.92036 0.90837 0.92809 0.89694 0.95107 0.92644 0.92165 0.93696 0.99670 0.99380 0.92935 0.92684 0.93308 0.89765 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 14.32 67.78 0.97 -2.12 16 2 C -0.20 -4.03 6.91 25.65 0.18 -3.85 16 3 C 0.11 2.27 2.69 44.17 0.12 2.39 16 4 H 0.09 1.78 7.64 -2.39 -0.02 1.76 16 5 C -0.14 -2.59 9.10 71.98 0.66 -1.93 16 6 N -0.53 -14.87 4.60 -875.51 -4.03 -18.91 16 7 C 0.07 1.95 5.19 86.32 0.45 2.40 16 8 C -0.11 -3.86 5.38 30.65 0.16 -3.70 16 9 C -0.07 -3.13 2.20 -10.71 -0.02 -3.15 16 10 C 0.03 1.82 4.45 29.85 0.13 1.96 16 11 C -0.53 -30.60 8.44 25.60 0.22 -30.38 16 12 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 13 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 14 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 15 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.09 -3.67 5.15 30.65 0.16 -3.51 16 20 C 0.06 1.95 4.71 86.33 0.41 2.35 16 21 H 0.10 1.63 8.06 -2.91 -0.02 1.60 16 22 H 0.11 1.64 7.84 -2.91 -0.02 1.62 16 23 H 0.10 2.20 7.26 -2.91 -0.02 2.18 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.06 6.43 -2.39 -0.02 1.04 16 27 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 28 H 0.03 0.89 7.60 -2.39 -0.02 0.87 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.05 2.27 7.05 -2.39 -0.02 2.26 16 36 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.08 2.28 6.21 -2.39 -0.01 2.27 16 38 H 0.03 0.94 6.79 -2.39 -0.02 0.92 16 Total: -1.00 -64.05 296.17 3.15 -60.90 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.99 Total: 8.10 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 3.89 Total: -39.22 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.75 Total: -76.86 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.05 3.15 -60.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399423711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.802 kcal (2) G-P(sol) polarization free energy of solvation -64.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds