Wall clock time and date at job start Mon Mar 30 2020 02:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46859 * 2 1 4 4 C 1.50696 * 109.47245 * 240.00160 * 2 1 3 5 5 H 1.08000 * 120.00125 * 245.45776 * 4 2 1 6 6 C 1.37877 * 119.99956 * 65.45538 * 4 2 1 7 7 N 1.31514 * 119.99859 * 9.56047 * 6 4 2 8 8 Si 1.86804 * 120.00062 * 189.55105 * 6 4 2 9 9 H 1.48495 * 109.47080 * 84.99586 * 8 6 4 10 10 H 1.48500 * 109.47029 * 204.99841 * 8 6 4 11 11 H 1.48507 * 109.46769 * 324.99645 * 8 6 4 12 12 N 1.46898 * 109.47314 * 119.99837 * 2 1 3 13 13 C 1.46908 * 111.00116 * 275.00340 * 12 2 1 14 14 C 1.52999 * 109.46799 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.61867 * 54.63800 * 14 13 12 16 16 C 1.53299 * 109.62217 * 294.08652 * 14 13 12 17 17 C 1.52869 * 108.59472 * 165.82773 * 16 14 13 18 18 C 1.50326 * 110.12163 * 55.08979 * 17 16 14 19 19 H 1.08996 * 112.92213 * 193.65624 * 18 17 16 20 20 C 1.52300 * 120.99795 * 49.79193 * 18 17 16 21 21 C 1.52296 * 121.02784 * 337.68286 * 18 17 16 22 22 H 1.09003 * 117.29960 * 217.64000 * 21 18 17 23 23 C 1.52712 * 119.78025 * 5.97691 * 21 18 17 24 24 H 1.09007 * 109.46913 * 183.69527 * 1 2 3 25 25 H 1.09003 * 109.47523 * 303.68816 * 1 2 3 26 26 H 1.08994 * 109.47675 * 63.68939 * 1 2 3 27 27 H 0.97004 * 119.99526 * 180.02562 * 7 6 4 28 28 H 1.00902 * 110.99825 * 38.95527 * 12 2 1 29 29 H 1.08999 * 109.46769 * 60.00145 * 13 12 2 30 30 H 1.09000 * 109.47051 * 299.99802 * 13 12 2 31 31 H 1.08994 * 109.61821 * 285.56645 * 16 14 13 32 32 H 1.09006 * 109.61192 * 46.10534 * 16 14 13 33 33 H 1.08995 * 109.27288 * 175.15551 * 17 16 14 34 34 H 1.09004 * 109.27132 * 294.66643 * 17 16 14 35 35 H 1.08993 * 117.54139 * 141.99917 * 20 18 17 36 36 H 1.09005 * 117.53542 * 356.82463 * 20 18 17 37 37 H 1.09002 * 109.35550 * 98.45700 * 23 21 18 38 38 H 1.09000 * 109.36176 * 218.04492 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.5786 -1.6370 -1.1338 6 6 1.7945 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5934 8 14 2.1761 -1.1779 -4.0102 9 1 1.0243 -2.0610 -4.3241 10 1 2.4227 -0.2611 -5.1521 11 1 3.3848 -2.0069 -3.7709 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 3.5476 -1.0083 3.3402 16 6 1.5723 -1.5977 3.9877 17 6 2.2406 -2.5608 4.9689 18 6 2.8171 -1.7990 6.1296 19 1 3.5019 -2.3965 6.7314 20 6 1.9821 -0.7767 6.8893 21 6 3.1541 -0.3189 6.0075 22 1 4.0520 0.0330 6.5156 23 6 2.7800 0.4419 4.7373 24 1 -0.3633 -1.0256 0.0662 25 1 -0.3634 0.5700 0.8551 26 1 -0.3634 0.4555 -0.9211 27 1 1.1314 1.4105 -3.4723 28 1 1.4496 -1.4979 1.4100 29 1 1.0870 0.6163 2.5526 30 1 2.7588 1.0463 2.1183 31 1 0.7195 -1.1187 4.4685 32 1 1.2387 -2.1461 3.1067 33 1 1.5002 -3.2712 5.3364 34 1 3.0355 -3.1025 4.4563 35 1 2.1131 -0.7220 7.9699 36 1 0.9727 -0.5813 6.5271 37 1 1.8507 0.9869 4.9031 38 1 3.5726 1.1492 4.4931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403161503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:28 Heat of formation + Delta-G solvation = -16.967802 kcal Electronic energy + Delta-G solvation = -15555.718798 eV Core-core repulsion = 13203.869864 eV Total energy + Delta-G solvation = -2351.848934 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66744 -37.89608 -35.24650 -33.49582 -32.00931 -30.03625 -27.22199 -26.09068 -25.16257 -22.35977 -22.03497 -21.55658 -19.31884 -18.39706 -17.17972 -16.68961 -16.19130 -15.45277 -15.28887 -14.77152 -14.52804 -14.45163 -13.98871 -13.64842 -13.45252 -13.14262 -12.86258 -12.78813 -12.64365 -12.43745 -12.25728 -12.14332 -11.84421 -11.65826 -11.42383 -11.31363 -10.92693 -10.58154 -10.45173 -10.40492 -8.94528 -8.11782 -6.19334 1.43508 1.43977 1.54441 2.44912 2.88509 3.17917 3.56541 3.80819 3.87533 3.95805 4.09317 4.24145 4.34475 4.51897 4.56685 4.62030 4.68020 4.77968 4.81874 4.84005 4.92407 4.96561 5.02692 5.06433 5.10174 5.27180 5.31960 5.37777 5.40718 5.43277 5.47545 5.60546 5.63766 5.76905 6.23708 6.68270 6.88328 6.95917 7.49219 8.96429 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055232 B = 0.005362 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.832547 B = 5220.910004 C = 5368.563781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.687 5.687 13 C 0.068 3.932 14 C -0.073 4.073 15 H 0.067 0.933 16 C -0.115 4.115 17 C -0.085 4.085 18 C -0.143 4.143 19 H 0.104 0.896 20 C -0.175 4.175 21 C -0.152 4.152 22 H 0.111 0.889 23 C -0.082 4.082 24 H 0.040 0.960 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.015 0.985 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 -4.461 17.100 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.103 3.897 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.318 5.318 13 C -0.061 4.061 14 C -0.092 4.092 15 H 0.086 0.914 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.161 4.161 19 H 0.122 0.878 20 C -0.212 4.212 21 C -0.170 4.170 22 H 0.129 0.871 23 C -0.120 4.120 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.497 -4.246 16.807 17.399 hybrid contribution -0.862 0.080 -0.949 1.284 sum 0.636 -4.167 15.858 16.409 Atomic orbital electron populations 1.22178 1.00109 0.99087 0.99431 1.18957 0.89802 0.93007 0.87904 0.98004 1.21424 1.34752 1.08138 0.91201 0.92715 1.25736 0.95498 0.95627 1.01994 1.70092 1.46662 1.15414 1.24335 0.85561 0.78715 0.78567 0.78729 1.19844 1.21098 1.19465 1.60705 1.57865 1.09661 1.03533 1.21929 0.97929 0.95318 0.90954 1.21082 0.99180 0.96165 0.92785 0.91443 1.21632 0.97786 0.96960 0.98867 1.20515 1.00035 0.97229 0.94448 1.21491 1.03155 0.91366 1.00093 0.87792 1.23155 0.95812 1.03859 0.98383 1.22257 0.99930 0.96661 0.98135 0.87130 1.21021 1.01433 0.96930 0.92578 0.94098 0.95366 0.93842 0.93012 0.85011 0.96649 0.93449 0.92097 0.92489 0.90664 0.91547 0.87696 0.89254 0.91896 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.17 9.04 71.98 0.65 -6.52 16 2 C 0.21 11.05 2.44 44.17 0.11 11.16 16 3 H 0.00 0.12 7.74 -2.39 -0.02 0.10 16 4 C -0.52 -29.42 8.76 25.60 0.22 -29.19 16 5 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 6 C 0.01 0.55 5.17 84.65 0.44 0.99 16 7 N -0.93 -54.90 12.16 21.45 0.26 -54.64 16 8 Si 0.96 44.62 29.55 68.60 2.03 46.64 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.69 -29.77 6.23 -495.45 -3.09 -32.85 16 13 C 0.07 2.50 4.95 86.30 0.43 2.93 16 14 C -0.07 -2.10 2.36 -10.73 -0.03 -2.13 16 15 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 16 C -0.11 -2.92 5.01 30.65 0.15 -2.76 16 17 C -0.09 -1.79 5.91 29.69 0.18 -1.62 16 18 C -0.14 -2.74 5.84 -12.12 -0.07 -2.81 16 19 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 20 C -0.18 -3.12 9.68 30.58 0.30 -2.83 16 21 C -0.15 -3.06 6.24 -10.91 -0.07 -3.12 16 22 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 23 C -0.08 -1.97 5.12 30.46 0.16 -1.81 16 24 H 0.04 1.83 8.07 -2.38 -0.02 1.81 16 25 H 0.03 1.21 7.55 -2.39 -0.02 1.19 16 26 H 0.04 2.32 6.83 -2.39 -0.02 2.30 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.33 13.32 6.53 -89.69 -0.59 12.73 16 29 H 0.02 0.56 7.51 -2.39 -0.02 0.54 16 30 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 31 H 0.06 1.49 7.13 -2.39 -0.02 1.47 16 32 H 0.06 1.58 6.25 -2.38 -0.01 1.56 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.68 7.30 -2.38 -0.02 1.66 16 37 H 0.06 1.50 8.06 -2.39 -0.02 1.48 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.76 293.85 2.09 -58.67 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.43 Total: 19.90 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 2.46 Total: -37.72 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.83 Total: -87.49 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.76 2.09 -58.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403161503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.703 kcal (2) G-P(sol) polarization free energy of solvation -60.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds