Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08998 * 112.85191 * 48.79988 * 9 7 2 11 11 C 1.53786 * 113.61654 * 179.97438 * 9 7 2 12 12 C 1.53781 * 87.08403 * 89.11179 * 11 9 7 13 13 H 1.09002 * 113.61276 * 270.88626 * 12 11 9 14 14 S 1.81394 * 113.61460 * 140.06684 * 12 11 9 15 15 O 1.42105 * 110.54095 * 180.02562 * 14 12 11 16 16 O 1.42102 * 110.54196 * 316.75258 * 14 12 11 17 17 Cl 2.01998 * 104.45080 * 68.37653 * 14 12 11 18 18 C 1.53779 * 87.08066 * 25.43266 * 12 11 9 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.08997 * 113.61611 * 203.66506 * 11 9 7 21 21 H 1.09005 * 113.60980 * 334.48096 * 11 9 7 22 22 H 1.09000 * 113.61582 * 220.02020 * 18 12 11 23 23 H 1.09005 * 113.61401 * 89.11493 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.4668 -2.5351 -0.7555 11 6 2.1634 -3.7372 0.0005 12 6 2.1361 -3.6601 1.5362 13 1 2.9231 -3.0334 1.9559 14 16 2.0204 -5.2805 2.3431 15 8 1.9994 -5.1333 3.7564 16 8 1.0704 -6.1019 1.6782 17 17 3.7967 -6.1626 1.9597 18 6 0.7840 -2.9407 1.3976 19 1 -0.4850 -0.8401 -0.0004 20 1 1.6860 -4.6313 -0.4003 21 1 3.1480 -3.5539 -0.4298 22 1 0.6555 -2.1142 2.0965 23 1 -0.0705 -3.6172 1.3787 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584600595.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -69.179643 kcal Electronic energy + Delta-G solvation = -11783.624029 eV Core-core repulsion = 9364.613095 eV Total energy + Delta-G solvation = -2419.010934 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 224.006 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.47831 -37.41111 -36.38826 -35.99130 -32.69974 -26.69551 -25.36807 -23.91578 -20.21745 -19.27203 -18.05973 -17.07649 -16.64707 -16.12809 -14.44835 -13.91105 -13.68227 -12.65809 -12.56093 -12.43847 -12.31959 -12.01487 -11.90906 -11.73900 -11.73028 -11.31487 -10.92624 -10.56902 -10.25580 -9.95973 -9.55874 -8.83259 -8.61639 -6.64299 -4.37847 -0.93596 1.65911 3.10961 3.30772 3.31866 3.50447 3.68226 4.32232 4.37552 4.74469 5.07316 5.19795 5.71400 5.89180 6.11445 6.21259 6.56820 6.61449 7.05708 7.87135 8.13299 8.56396 9.34083 10.75342 Molecular weight = 224.01amu Principal moments of inertia in cm(-1) A = 0.053186 B = 0.008136 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.323604 B = 3440.835379 C = 3577.451129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.046 3.954 10 H 0.050 0.950 11 C -0.116 4.116 12 C -0.511 4.511 13 H 0.167 0.833 14 S 2.333 3.667 15 O -0.887 6.887 16 O -0.879 6.879 17 Cl -0.505 7.505 18 C -0.119 4.119 19 H 0.273 0.727 20 H 0.085 0.915 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -6.188 2.073 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.025 3.975 10 H 0.068 0.932 11 C -0.155 4.155 12 C -0.627 4.627 13 H 0.184 0.816 14 S 2.437 3.563 15 O -0.885 6.885 16 O -0.878 6.878 17 Cl -0.504 7.504 18 C -0.161 4.161 19 H 0.084 0.916 20 H 0.103 0.897 21 H 0.106 0.894 22 H 0.110 0.890 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.776 -5.337 2.491 6.997 hybrid contribution 0.319 -1.425 0.083 1.463 sum 4.095 -6.763 2.574 8.314 Atomic orbital electron populations 1.70808 1.06912 1.31063 1.44294 1.25910 0.96443 1.02853 0.92946 0.83534 0.74991 0.75126 0.76790 1.20588 1.21176 1.21219 1.21720 0.94256 0.90386 1.56498 0.92370 1.19907 0.94398 0.92446 0.90733 0.93246 1.23008 1.03928 1.01800 0.86804 1.31545 1.11453 1.10685 1.09016 0.81585 1.14582 0.79715 0.83109 0.78912 1.93682 1.81614 1.86431 1.26807 1.93697 1.52395 1.65935 1.75735 1.99006 1.65686 1.89042 1.96679 1.23426 0.88731 0.98517 1.05407 0.91646 0.89707 0.89389 0.89018 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.65 55.43 0.76 -23.56 14 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 14 3 Si 1.07 22.70 29.90 -169.99 -5.08 17.61 14 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 14 5 H -0.29 -5.83 7.11 56.52 0.40 -5.43 14 6 H -0.29 -5.82 7.11 56.52 0.40 -5.42 14 7 C -0.59 -14.29 8.45 -34.44 -0.29 -14.58 14 8 H 0.06 1.38 7.81 -52.48 -0.41 0.97 14 9 C 0.05 0.97 3.11 -90.95 -0.28 0.69 14 10 H 0.05 1.11 7.63 -51.93 -0.40 0.71 14 11 C -0.12 -1.98 7.23 -25.92 -0.19 -2.17 14 12 C -0.51 -8.29 4.14 -25.92 -0.11 -8.40 14 13 H 0.17 2.51 8.14 -51.93 -0.42 2.09 14 14 S 2.33 36.87 5.64 -107.50 -0.61 36.26 14 15 O -0.89 -15.82 18.05 -57.54 -1.04 -16.86 14 16 O -0.88 -15.45 17.67 -57.54 -1.02 -16.47 14 17 Cl -0.51 -7.81 29.46 -51.86 -1.53 -9.34 14 18 C -0.12 -2.24 7.17 -25.92 -0.19 -2.42 14 19 H 0.27 7.24 7.02 -40.82 -0.29 6.95 14 20 H 0.08 1.30 7.78 -51.93 -0.40 0.89 14 21 H 0.09 1.43 8.09 -51.93 -0.42 1.01 14 22 H 0.09 1.83 8.09 -51.93 -0.42 1.41 14 23 H 0.07 1.26 8.10 -51.93 -0.42 0.84 14 LS Contribution 233.93 15.07 3.53 3.53 Total: -1.00 -28.71 233.93 -8.12 -36.83 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -1.98 Total: -1.66 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -1.15 Total: -26.34 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.76 Total: -23.56 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -2.06 Total: -33.33 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.08 Total: 17.61 kcal Atomic # 16 Polarization: 36.87 SS G_CDS: -0.61 Total: 36.26 kcal Atomic # 17 Polarization: -7.81 SS G_CDS: -1.53 Total: -9.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.71 -8.12 -36.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600595.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.349 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds