Wall clock time and date at job start Mon Mar 30 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09001 * 112.84766 * 50.33014 * 9 7 2 11 11 C 1.53778 * 113.61422 * 181.53104 * 9 7 2 12 12 C 1.53779 * 87.08148 * 139.97981 * 11 9 7 13 13 H 1.09005 * 113.61358 * 89.19744 * 12 11 9 14 14 S 1.81400 * 113.61611 * 220.01904 * 12 11 9 15 15 O 1.42098 * 110.54486 * 179.97438 * 14 12 11 16 16 O 1.42101 * 110.54185 * 316.74994 * 14 12 11 17 17 Cl 2.01996 * 104.45085 * 68.37567 * 14 12 11 18 18 C 1.53781 * 113.61525 * 279.13725 * 9 7 2 19 19 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 20 20 H 1.09003 * 113.61115 * 254.52734 * 11 9 7 21 21 H 1.08993 * 113.61682 * 25.34855 * 11 9 7 22 22 H 1.09005 * 113.61630 * 334.56967 * 18 9 7 23 23 H 1.09003 * 113.61579 * 105.46497 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.4839 -2.5449 -0.7734 11 6 2.1630 -3.7368 0.0365 12 6 1.1474 -4.3587 1.0095 13 1 0.3517 -4.9148 0.5137 14 16 1.9150 -5.2860 2.3665 15 8 0.9208 -5.8303 3.2235 16 8 2.9830 -6.0879 1.8810 17 17 2.8228 -3.8750 3.4911 18 6 0.7499 -2.9211 1.3907 19 1 -0.4850 -0.8401 0.0004 20 1 2.2293 -4.2590 -0.9181 21 1 3.1386 -3.5472 0.4839 22 1 1.3379 -2.5083 2.2105 23 1 -0.3229 -2.7855 1.5280 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584600597.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:42 Heat of formation + Delta-G solvation = -66.076498 kcal Electronic energy + Delta-G solvation = -11842.429897 eV Core-core repulsion = 9423.553526 eV Total energy + Delta-G solvation = -2418.876371 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 224.006 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.34957 -37.48323 -36.37906 -35.97944 -32.70685 -26.88338 -25.26842 -23.53092 -20.09467 -19.70545 -17.76053 -17.47607 -16.18386 -16.06313 -15.04683 -13.85918 -13.32770 -12.75893 -12.53535 -12.43812 -12.31392 -12.18057 -11.71756 -11.66297 -11.40077 -11.08358 -10.86111 -10.74153 -10.20710 -9.97987 -9.62800 -8.66204 -8.53204 -6.56367 -4.27454 -0.91451 1.61913 3.10898 3.37521 3.39151 3.53362 3.59304 4.39226 4.46157 4.70677 5.03801 5.16891 5.78396 5.93646 6.14552 6.24931 6.52128 6.64937 7.17147 7.91938 8.24215 8.64988 9.42295 10.83097 Molecular weight = 224.01amu Principal moments of inertia in cm(-1) A = 0.048438 B = 0.009103 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.919996 B = 3075.017441 C = 3244.833970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.037 3.963 10 H 0.055 0.945 11 C -0.103 4.103 12 C -0.545 4.545 13 H 0.163 0.837 14 S 2.344 3.656 15 O -0.891 6.891 16 O -0.885 6.885 17 Cl -0.475 7.475 18 C -0.124 4.124 19 H 0.271 0.729 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 -7.139 1.802 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.182 4.182 3 Si 0.900 3.100 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.628 4.628 8 H 0.078 0.922 9 C 0.017 3.983 10 H 0.073 0.927 11 C -0.142 4.142 12 C -0.660 4.660 13 H 0.180 0.820 14 S 2.445 3.555 15 O -0.889 6.889 16 O -0.883 6.883 17 Cl -0.474 7.474 18 C -0.164 4.164 19 H 0.082 0.918 20 H 0.096 0.904 21 H 0.109 0.891 22 H 0.121 0.879 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.223 -5.985 2.448 6.838 hybrid contribution -0.161 -1.733 -0.255 1.759 sum 2.062 -7.719 2.194 8.285 Atomic orbital electron populations 1.70763 1.06932 1.30870 1.45033 1.25883 0.96442 1.02830 0.93033 0.83492 0.74677 0.74718 0.77147 1.21244 1.21159 1.21238 1.21975 0.94486 0.90709 1.55580 0.92245 1.20029 0.94110 0.92900 0.91265 0.92708 1.22910 0.96330 0.98422 0.96510 1.31792 1.12012 1.09746 1.12478 0.81967 1.14156 0.78972 0.80752 0.81587 1.93682 1.57547 1.73144 1.64514 1.93690 1.53406 1.61827 1.79406 1.99011 1.88145 1.77754 1.82458 1.23605 1.02576 0.85628 1.04607 0.91818 0.90388 0.89113 0.87918 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.65 55.43 0.76 -24.04 14 2 C 0.02 0.62 5.46 -17.82 -0.10 0.53 14 3 Si 1.07 23.53 29.90 -169.99 -5.08 18.44 14 4 H -0.29 -6.01 7.11 56.52 0.40 -5.61 14 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 14 6 H -0.29 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.59 -14.70 8.76 -34.44 -0.30 -15.00 14 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 14 9 C 0.04 0.79 2.89 -90.96 -0.26 0.53 14 10 H 0.05 1.21 7.69 -51.93 -0.40 0.81 14 11 C -0.10 -1.77 7.15 -25.92 -0.19 -1.96 14 12 C -0.54 -8.32 4.60 -25.83 -0.12 -8.44 14 13 H 0.16 1.97 8.14 -51.93 -0.42 1.54 14 14 S 2.34 36.74 5.87 -107.50 -0.63 36.11 14 15 O -0.89 -15.43 18.05 -57.53 -1.04 -16.47 14 16 O -0.89 -15.23 17.97 -57.53 -1.03 -16.26 14 17 Cl -0.47 -8.15 27.27 -51.86 -1.41 -9.57 14 18 C -0.12 -2.34 6.93 -25.83 -0.18 -2.52 14 19 H 0.27 7.25 6.99 -40.82 -0.29 6.97 14 20 H 0.08 1.18 8.14 -51.93 -0.42 0.76 14 21 H 0.09 1.57 8.05 -51.93 -0.42 1.15 14 22 H 0.10 1.99 5.94 -51.93 -0.31 1.69 14 23 H 0.07 1.37 8.14 -51.93 -0.42 0.95 14 LS Contribution 230.74 15.07 3.48 3.48 Total: -1.00 -29.47 230.74 -8.00 -37.46 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -1.89 Total: -2.30 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -1.15 Total: -26.86 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.76 Total: -24.04 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -2.07 Total: -32.73 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.08 Total: 18.44 kcal Atomic # 16 Polarization: 36.74 SS G_CDS: -0.63 Total: 36.11 kcal Atomic # 17 Polarization: -8.15 SS G_CDS: -1.41 Total: -9.57 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.47 -8.00 -37.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600597.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.612 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds