Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00088 * 9 7 5 11 11 H 1.48495 * 109.46891 * 210.00496 * 9 7 5 12 12 H 1.48504 * 109.47189 * 330.00185 * 9 7 5 13 13 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 14 14 C 1.46900 * 110.99981 * 274.99476 * 13 2 1 15 15 H 1.08998 * 109.35544 * 35.28390 * 14 13 2 16 16 C 1.52878 * 109.35962 * 275.69659 * 14 13 2 17 17 C 1.55051 * 107.81135 * 184.56041 * 16 14 13 18 18 C 1.52869 * 107.82044 * 75.50934 * 17 16 14 19 19 C 1.52077 * 110.51581 * 304.40795 * 18 17 16 20 20 H 1.09003 * 114.63907 * 166.83678 * 19 18 17 21 21 C 1.52305 * 119.22923 * 310.70127 * 19 18 17 22 22 C 1.52072 * 120.01949 * 21.69816 * 19 18 17 23 23 H 1.08998 * 117.25292 * 145.17770 * 22 19 18 24 24 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 25 25 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 26 26 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 29 29 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 30 30 H 1.00907 * 110.99901 * 151.04662 * 13 2 1 31 31 H 1.08993 * 109.61928 * 304.99520 * 16 14 13 32 32 H 1.09000 * 109.61472 * 65.53795 * 16 14 13 33 33 H 1.09001 * 110.58074 * 315.68274 * 17 16 14 34 34 H 1.09002 * 109.56773 * 194.75148 * 17 16 14 35 35 H 1.09000 * 109.26937 * 184.14188 * 18 17 16 36 36 H 1.09003 * 109.26827 * 64.67276 * 18 17 16 37 37 H 1.08996 * 117.53532 * 2.68286 * 21 19 18 38 38 H 1.09002 * 117.53552 * 217.43015 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3584 8 7 5.5410 -1.1003 -2.4135 9 14 3.3013 -2.1078 -3.6960 10 1 2.9396 -1.1626 -4.7827 11 1 4.1601 -3.1879 -4.2447 12 1 2.0657 -2.7004 -3.1238 13 7 2.0196 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2542 0.9287 2.2915 16 6 3.4035 0.9912 2.3103 17 6 3.4840 1.8572 3.5939 18 6 3.8198 0.9310 4.7628 19 6 2.8035 -0.1963 4.8585 20 1 3.0947 -1.0161 5.5152 21 6 1.3178 0.1373 4.8289 22 6 1.9770 -0.5810 3.6413 23 1 1.7309 -1.6356 3.5181 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 6.0252 -1.5065 -3.1494 30 1 2.9173 -1.1206 1.0287 31 1 4.2352 0.2879 2.2697 32 1 3.4256 1.6392 1.4341 33 1 2.5318 2.3531 3.7819 34 1 4.2698 2.6042 3.4816 35 1 3.8099 1.5038 5.6900 36 1 4.8131 0.5079 4.6126 37 1 1.0386 1.1822 4.6939 38 1 0.6570 -0.4482 5.4681 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592182824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -0.788773 kcal Electronic energy + Delta-G solvation = -15876.798094 eV Core-core repulsion = 13525.650735 eV Total energy + Delta-G solvation = -2351.147359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50603 -36.29690 -32.88364 -32.39794 -31.07692 -27.90422 -27.31614 -23.88598 -22.61322 -22.21405 -20.68563 -19.38632 -18.20302 -16.76003 -16.21673 -14.96814 -14.42020 -14.19819 -13.92126 -13.51600 -13.22350 -12.93672 -12.43962 -12.21127 -11.95267 -11.83837 -11.56054 -11.25656 -11.04007 -10.94281 -10.80534 -10.68917 -10.37407 -10.15290 -9.79299 -9.64391 -9.41459 -9.34324 -9.18775 -8.54783 -7.59261 -6.05762 -4.03854 3.31307 3.39186 3.44272 3.96050 4.45438 4.63581 4.85523 4.99969 5.19622 5.26979 5.32982 5.44648 5.45974 5.65557 5.73822 5.82346 5.83394 5.91424 5.96895 6.07328 6.12618 6.20039 6.26143 6.29835 6.35986 6.43021 6.55361 6.61414 6.69764 6.75451 6.84028 7.20457 7.34859 7.77581 7.98680 8.30554 8.50348 8.96873 9.57344 11.07142 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.007282 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.157848 B = 3844.413265 C = 4280.410434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.035 0.965 4 C -0.017 4.017 5 C -0.522 4.522 6 H 0.071 0.929 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.680 5.680 14 C 0.120 3.880 15 H 0.070 0.930 16 C -0.146 4.146 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.145 4.145 20 H 0.094 0.906 21 C -0.190 4.190 22 C -0.123 4.123 23 H 0.108 0.892 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.015 0.985 29 H 0.262 0.738 30 H 0.358 0.642 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 3.389 12.079 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.053 0.947 4 C -0.055 4.055 5 C -0.560 4.560 6 H 0.089 0.911 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.312 5.312 14 C 0.010 3.990 15 H 0.088 0.912 16 C -0.185 4.185 17 C -0.156 4.156 18 C -0.124 4.124 19 C -0.163 4.163 20 H 0.112 0.888 21 C -0.227 4.227 22 C -0.141 4.141 23 H 0.126 0.874 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.180 0.820 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.266 3.064 12.116 14.456 hybrid contribution 0.449 0.047 -0.979 1.078 sum -6.817 3.111 11.137 13.423 Atomic orbital electron populations 1.21845 0.96799 1.01315 0.99656 1.21369 0.93046 0.96126 0.90781 0.94721 1.19771 0.96997 0.96236 0.92496 1.21107 0.89893 1.35174 1.09847 0.91072 1.25006 0.94676 0.95702 0.97884 1.69917 1.06579 1.45349 1.32243 0.86776 0.80327 0.79911 0.82259 1.20458 1.21497 1.18874 1.60658 1.35057 1.31531 1.04004 1.20984 0.95909 0.92386 0.89745 0.91195 1.22616 0.99302 0.99402 0.97206 1.21871 1.01147 0.97525 0.95101 1.20839 0.98072 0.95428 0.98110 1.21833 0.92421 1.00500 1.01537 0.88825 1.23087 0.95219 1.01133 1.03236 1.22306 1.02786 1.00143 0.88904 0.87359 0.94139 0.93435 0.92703 0.95697 0.96635 0.92782 0.81976 0.91024 0.91684 0.92150 0.92185 0.92227 0.91587 0.89201 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.40 37.16 0.35 -2.03 16 2 C 0.10 1.93 2.40 -67.71 -0.16 1.77 16 3 H 0.03 0.72 7.11 -51.93 -0.37 0.36 16 4 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16 5 C -0.52 -14.39 8.67 -34.44 -0.30 -14.69 16 6 H 0.07 2.09 7.73 -52.49 -0.41 1.68 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 13 N -0.68 -12.90 6.02 -99.96 -0.60 -13.50 16 14 C 0.12 1.94 2.21 -67.92 -0.15 1.79 16 15 H 0.07 1.13 7.02 -51.93 -0.36 0.76 16 16 C -0.15 -2.36 5.23 -25.71 -0.13 -2.50 16 17 C -0.12 -1.55 5.77 -25.71 -0.15 -1.70 16 18 C -0.09 -1.05 5.90 -27.27 -0.16 -1.21 16 19 C -0.14 -1.81 6.03 -91.92 -0.55 -2.37 16 20 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 21 C -0.19 -2.30 9.64 -26.75 -0.26 -2.56 16 22 C -0.12 -1.76 5.82 -90.90 -0.53 -2.29 16 23 H 0.11 1.64 8.10 -51.93 -0.42 1.22 16 24 H 0.04 0.63 7.42 -51.93 -0.39 0.25 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 28 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.36 7.61 6.90 -39.29 -0.27 7.34 16 31 H 0.07 1.27 7.96 -51.93 -0.41 0.85 16 32 H 0.06 1.16 7.46 -51.93 -0.39 0.77 16 33 H 0.06 0.75 7.05 -51.93 -0.37 0.38 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.06 7.18 -51.93 -0.37 0.69 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -28.50 292.36 -8.98 -37.48 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.65 Total: 5.62 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -2.25 Total: -24.42 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.17 Total: -40.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.50 -8.98 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592182824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.695 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds