Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46812 * 2 1 4 4 C 1.50693 * 109.47621 * 240.00067 * 2 1 3 5 5 H 1.07995 * 120.00385 * 239.99956 * 4 2 1 6 6 C 1.37885 * 119.99750 * 59.99746 * 4 2 1 7 7 N 1.31507 * 120.00163 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47590 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47136 * 120.00034 * 8 6 4 11 11 H 1.48507 * 109.46916 * 239.99613 * 8 6 4 12 12 N 1.46897 * 109.47225 * 119.99566 * 2 1 3 13 13 C 1.46901 * 111.00206 * 176.04988 * 12 2 1 14 14 C 1.46906 * 111.00313 * 300.00665 * 12 2 1 15 15 C 1.52995 * 109.47020 * 169.99598 * 14 12 2 16 16 H 1.09004 * 110.81778 * 51.66855 * 15 14 12 17 17 C 1.54882 * 110.75952 * 288.32748 * 15 14 12 18 18 C 1.54268 * 104.19992 * 203.74429 * 17 15 14 19 19 H 1.08999 * 117.76379 * 163.96731 * 18 17 15 20 20 C 1.53004 * 118.19758 * 319.43479 * 18 17 15 21 21 C 1.52997 * 60.37921 * 93.61238 * 20 18 17 22 22 H 1.09005 * 119.75678 * 111.12556 * 21 20 18 23 23 C 1.54268 * 118.20099 * 266.38227 * 21 20 18 24 24 H 1.08992 * 109.47443 * 299.99848 * 1 2 3 25 25 H 1.09001 * 109.46860 * 60.00428 * 1 2 3 26 26 H 1.08996 * 109.46611 * 179.97438 * 1 2 3 27 27 H 0.96997 * 119.99969 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47164 * 183.95764 * 13 12 2 29 29 H 1.08998 * 109.46772 * 303.95565 * 13 12 2 30 30 H 1.08997 * 109.46946 * 63.95568 * 13 12 2 31 31 H 1.08999 * 109.46865 * 49.99616 * 14 12 2 32 32 H 1.09002 * 109.46600 * 290.00029 * 14 12 2 33 33 H 1.09003 * 110.48391 * 322.42177 * 17 15 14 34 34 H 1.09004 * 110.48801 * 85.06718 * 17 15 14 35 35 H 1.08998 * 117.46070 * 346.01118 * 20 18 17 36 36 H 1.08996 * 117.45748 * 201.21088 * 20 18 17 37 37 H 1.08999 * 110.49069 * 281.89696 * 23 21 20 38 38 H 1.08996 * 110.48777 * 159.25000 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2392 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3216 -1.1202 -4.0078 9 1 3.1468 -2.2868 -3.6037 10 1 1.1664 -1.5867 -4.8160 11 1 3.1468 -0.1871 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9042 3.6341 16 1 2.9122 -1.1984 3.6381 17 6 0.9432 -2.1503 3.6627 18 6 0.9231 -2.5719 5.1465 19 1 0.1406 -3.2590 5.4686 20 6 2.2330 -2.5064 5.9345 21 6 1.2720 -1.3163 5.9649 22 1 0.7403 -1.0736 6.8850 23 6 1.4918 -0.1756 4.9498 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.7090 1.1614 -3.4844 28 1 3.8164 -1.3720 2.0501 29 1 3.8070 -1.2913 0.2720 30 1 3.9192 0.2045 1.2301 31 1 0.4722 0.1324 2.3564 32 1 2.0518 0.9347 2.5280 33 1 -0.0607 -1.8914 3.3260 34 1 1.3601 -2.9463 3.0456 35 1 3.1562 -2.3926 5.3663 36 1 2.3083 -3.1148 6.8357 37 1 2.3092 0.4695 5.2719 38 1 0.5766 0.4021 4.8210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595342843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = 23.357327 kcal Electronic energy + Delta-G solvation = -15862.592927 eV Core-core repulsion = 13512.492622 eV Total energy + Delta-G solvation = -2350.100305 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.61797 -36.80477 -33.10125 -31.34423 -29.03571 -27.98439 -26.59203 -24.59109 -23.66107 -21.68028 -19.72067 -19.27341 -18.74417 -16.36082 -15.75500 -15.38892 -14.68881 -13.92796 -13.65106 -13.43039 -13.12255 -12.76395 -12.38114 -12.00761 -11.86997 -11.28447 -11.14791 -11.04480 -10.98875 -10.77826 -10.47863 -10.42077 -10.07834 -10.03939 -9.98210 -9.93746 -9.63619 -9.35383 -8.79868 -8.39493 -7.08382 -5.98530 -4.02575 3.31051 3.38871 3.43366 3.80362 4.42770 4.63993 4.75986 5.02798 5.08020 5.26264 5.32614 5.46457 5.67523 5.70350 5.74890 5.80544 5.99311 6.11090 6.18507 6.21214 6.23188 6.33052 6.36925 6.40534 6.53484 6.63836 6.74273 6.84942 6.92382 7.09572 7.21078 7.57248 7.78501 7.86484 8.26416 8.37453 8.66488 9.04717 9.62366 11.08433 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052003 B = 0.006159 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.305648 B = 4545.076491 C = 4689.693548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.534 5.534 13 C 0.036 3.964 14 C 0.059 3.941 15 C -0.091 4.091 16 H 0.074 0.926 17 C -0.076 4.076 18 C -0.167 4.167 19 H 0.103 0.897 20 C -0.157 4.157 21 C -0.171 4.171 22 H 0.103 0.897 23 C -0.091 4.091 24 H 0.008 0.992 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.259 0.741 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.007 0.993 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 -3.392 13.572 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.259 5.259 13 C -0.113 4.113 14 C -0.069 4.069 15 C -0.109 4.109 16 H 0.092 0.908 17 C -0.113 4.113 18 C -0.185 4.185 19 H 0.121 0.879 20 C -0.194 4.194 21 C -0.189 4.189 22 H 0.121 0.879 23 C -0.129 4.129 24 H 0.027 0.973 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.634 -3.743 13.398 13.925 hybrid contribution 0.563 0.443 -0.788 1.065 sum 1.198 -3.300 12.610 13.090 Atomic orbital electron populations 1.21841 0.97812 0.99589 0.99767 1.19235 0.92282 0.91919 0.86085 0.98669 1.21210 1.30775 1.12170 0.89790 0.91820 1.24941 0.95275 0.95099 0.99026 1.69903 1.37113 1.23123 1.23221 0.86480 0.78580 0.79608 0.82968 1.19762 1.21052 1.21205 1.62098 1.08988 1.52668 1.02145 1.22241 0.89128 0.98577 1.01316 1.22103 1.00706 0.93989 0.90112 1.22159 0.99649 0.95662 0.93462 0.90791 1.21809 1.00066 0.97260 0.92172 1.23265 0.99127 1.00861 0.95241 0.87853 1.22865 0.94539 1.00454 1.01578 1.23106 1.05084 0.90743 0.99985 0.87885 1.21956 1.01255 0.96175 0.93551 0.97327 0.89784 0.94699 0.93105 0.93846 0.90611 0.97403 0.90771 0.96381 0.91015 0.91042 0.89029 0.88970 0.92039 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.76 37.16 0.33 -2.94 16 2 C 0.21 5.40 2.06 -68.87 -0.14 5.25 16 3 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 4 C -0.50 -13.81 7.88 -34.44 -0.27 -14.08 16 5 H 0.06 1.75 6.40 -52.49 -0.34 1.42 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.53 -11.58 4.55 -236.29 -1.07 -12.66 16 13 C 0.04 0.72 9.07 60.07 0.54 1.27 16 14 C 0.06 1.10 4.21 -3.82 -0.02 1.08 16 15 C -0.09 -1.38 2.36 -88.63 -0.21 -1.58 16 16 H 0.07 1.15 5.55 -51.93 -0.29 0.86 16 17 C -0.08 -1.12 6.14 -25.07 -0.15 -1.28 16 18 C -0.17 -2.09 7.06 -89.50 -0.63 -2.72 16 19 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.16 -1.80 9.83 -26.73 -0.26 -2.06 16 21 C -0.17 -2.03 7.06 -89.50 -0.63 -2.66 16 22 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 23 C -0.09 -1.19 6.21 -25.07 -0.16 -1.34 16 24 H 0.01 0.18 6.20 -51.93 -0.32 -0.15 16 25 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.04 0.75 6.34 -51.93 -0.33 0.42 16 29 H 0.08 1.63 6.10 -51.93 -0.32 1.31 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 1.40 5.67 -51.93 -0.29 1.11 16 32 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.09 7.21 -51.93 -0.37 0.72 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -28.12 289.77 -9.14 -37.27 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.34 Total: -0.76 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.70 Total: -19.56 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.45 Total: -37.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.12 -9.14 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.625 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds