Wall clock time and date at job start Mon Mar 30 2020 02:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.47318 * 2 1 4 4 C 1.50698 * 109.46966 * 120.00449 * 2 1 3 5 5 H 1.08000 * 120.00234 * 119.99555 * 4 2 1 6 6 C 1.37874 * 120.00218 * 299.99258 * 4 2 1 7 7 N 1.31515 * 120.00388 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99926 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47270 * 89.99509 * 8 6 4 10 10 H 1.48498 * 109.47333 * 209.99623 * 8 6 4 11 11 H 1.48497 * 109.47033 * 329.99626 * 8 6 4 12 12 N 1.46903 * 109.46823 * 239.99834 * 2 1 3 13 13 C 1.46895 * 111.00047 * 183.95385 * 12 2 1 14 14 C 1.46904 * 110.99807 * 60.00339 * 12 2 1 15 15 C 1.52995 * 109.47371 * 203.07542 * 14 12 2 16 16 H 1.09005 * 110.66834 * 50.13381 * 15 14 12 17 17 C 1.54893 * 110.75511 * 286.89958 * 15 14 12 18 18 C 1.54469 * 104.09792 * 203.89279 * 17 15 14 19 19 H 1.08998 * 117.78757 * 163.83726 * 18 17 15 20 20 C 1.53006 * 118.09956 * 319.13098 * 18 17 15 21 21 C 1.53000 * 60.37950 * 93.78148 * 20 18 17 22 22 H 1.08994 * 119.75971 * 111.11836 * 21 20 18 23 23 C 1.54268 * 118.19635 * 266.38726 * 21 20 18 24 24 H 1.08992 * 109.46877 * 59.99233 * 1 2 3 25 25 H 1.08998 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46331 * 299.99950 * 1 2 3 27 27 H 0.97002 * 120.00492 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.47200 * 300.35520 * 13 12 2 29 29 H 1.08997 * 109.47396 * 60.35477 * 13 12 2 30 30 H 1.08998 * 109.47048 * 180.35978 * 13 12 2 31 31 H 1.09001 * 109.47219 * 83.07216 * 14 12 2 32 32 H 1.09004 * 109.46885 * 323.07831 * 14 12 2 33 33 H 1.09000 * 110.48402 * 322.41830 * 17 15 14 34 34 H 1.08999 * 110.48358 * 85.06737 * 17 15 14 35 35 H 1.08999 * 117.46153 * 346.18150 * 20 18 17 36 36 H 1.08999 * 117.45897 * 201.37934 * 20 18 17 37 37 H 1.08997 * 110.48280 * 281.88361 * 23 21 20 38 38 H 1.09003 * 110.48479 * 159.24706 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6251 1.2790 2.6542 9 1 -0.8025 0.8728 2.6998 10 1 0.9763 1.9949 3.9069 11 1 0.8474 2.1765 1.4922 12 7 2.0197 -0.6926 -1.1995 13 6 3.4851 -0.7946 -1.1871 14 6 1.5487 -0.0264 -2.4211 15 6 1.5606 -1.0225 -3.5822 16 1 1.0523 -1.9454 -3.3026 17 6 3.0110 -1.3122 -4.0421 18 6 2.8552 -1.7795 -5.5062 19 1 3.7459 -1.7876 -6.1345 20 6 1.6917 -2.7138 -5.8445 21 6 1.5224 -1.2027 -6.0147 22 1 1.4335 -0.7775 -7.0144 23 6 0.9144 -0.4011 -4.8453 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.9036 -0.5281 4.4375 28 1 3.9187 0.2049 -1.1529 29 1 3.8027 -1.3586 -0.3102 30 1 3.8212 -1.3057 -2.0892 31 1 2.2057 0.8115 -2.6544 32 1 0.5337 0.3399 -2.2669 33 1 3.6144 -0.4057 -3.9948 34 1 3.4545 -2.0992 -3.4323 35 1 1.1695 -3.1876 -5.0134 36 1 1.7768 -3.3151 -6.7496 37 1 -0.1682 -0.5247 -4.8202 38 1 1.1770 0.6536 -4.9285 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595342844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:07 Heat of formation + Delta-G solvation = 37.871093 kcal Electronic energy + Delta-G solvation = -15927.438403 eV Core-core repulsion = 13577.967462 eV Total energy + Delta-G solvation = -2349.470941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75598 -37.03332 -33.09249 -31.51103 -29.91301 -28.12820 -26.88457 -24.59596 -23.57969 -21.79872 -19.74125 -19.29329 -19.11274 -16.72078 -15.93023 -15.53690 -14.96292 -14.16051 -13.74818 -13.40955 -12.96749 -12.91477 -12.74992 -12.42959 -11.93335 -11.91029 -11.43488 -11.28108 -11.08536 -10.74413 -10.66751 -10.41973 -10.26885 -10.10126 -9.98688 -9.87955 -9.45786 -9.39174 -8.96072 -8.54471 -7.28813 -6.05052 -4.03220 3.27407 3.37102 3.39348 3.73129 4.41164 4.54723 4.64058 4.85862 4.99571 5.17686 5.25528 5.35485 5.52626 5.63835 5.67255 5.77678 5.88868 5.95806 6.01220 6.11779 6.12309 6.14636 6.20376 6.30595 6.36259 6.38660 6.46128 6.60143 6.65812 6.69609 6.86071 6.96936 7.31875 7.63110 8.00568 8.15993 8.69349 9.01850 9.57304 11.07776 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052740 B = 0.006588 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.778688 B = 4249.371010 C = 4527.106585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H -0.005 1.005 4 C -0.504 4.504 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.525 5.525 13 C 0.024 3.976 14 C 0.053 3.947 15 C -0.086 4.086 16 H 0.084 0.916 17 C -0.091 4.091 18 C -0.169 4.169 19 H 0.103 0.897 20 C -0.155 4.155 21 C -0.170 4.170 22 H 0.103 0.897 23 C -0.091 4.091 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.263 0.737 28 H 0.009 0.991 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 0.709 -16.829 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.249 5.249 13 C -0.124 4.124 14 C -0.076 4.076 15 C -0.105 4.105 16 H 0.102 0.898 17 C -0.128 4.128 18 C -0.187 4.187 19 H 0.121 0.879 20 C -0.192 4.192 21 C -0.188 4.188 22 H 0.121 0.879 23 C -0.129 4.129 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.160 0.252 -16.600 16.642 hybrid contribution -0.270 1.687 0.181 1.718 sum -1.430 1.939 -16.418 16.594 Atomic orbital electron populations 1.22236 0.98687 1.01325 0.98097 1.19690 0.91345 0.92567 0.89109 0.98740 1.21007 1.31768 1.13491 0.87935 0.89916 1.24929 0.95870 0.96602 0.95840 1.69881 1.45838 1.40340 0.97846 0.86879 0.80795 0.83873 0.76741 1.20553 1.22537 1.19528 1.61889 1.09933 1.51897 1.01200 1.22586 0.88089 0.99357 1.02402 1.22183 1.00459 0.94185 0.90745 1.22127 0.95495 0.99558 0.93353 0.89753 1.22225 0.97409 1.00698 0.92429 1.23261 0.92352 1.04838 0.98212 0.87858 1.22891 1.01571 0.91993 1.02780 1.23105 1.01435 0.95092 0.99156 0.87858 1.21949 0.99628 0.98667 0.92691 0.95130 0.92048 0.94132 0.92670 0.97232 0.90366 0.92078 0.95751 0.90937 0.91385 0.90480 0.88690 0.88889 0.91667 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.53 37.16 0.32 -2.94 16 2 C 0.18 4.35 1.65 -68.86 -0.11 4.23 16 3 H 0.00 -0.12 7.20 -51.93 -0.37 -0.50 16 4 C -0.50 -14.21 8.51 -34.44 -0.29 -14.50 16 5 H 0.08 2.53 6.64 -52.49 -0.35 2.18 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.89 22.21 24.37 -169.99 -4.14 18.07 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.41 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.53 -10.93 4.53 -236.28 -1.07 -12.01 16 13 C 0.02 0.46 8.89 60.06 0.53 1.00 16 14 C 0.05 0.90 4.54 -3.82 -0.02 0.89 16 15 C -0.09 -1.24 2.61 -88.63 -0.23 -1.47 16 16 H 0.08 1.31 7.39 -51.93 -0.38 0.93 16 17 C -0.09 -1.20 4.42 -24.96 -0.11 -1.31 16 18 C -0.17 -1.95 7.07 -89.39 -0.63 -2.58 16 19 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.16 -1.69 9.83 -26.73 -0.26 -1.95 16 21 C -0.17 -1.89 7.06 -89.50 -0.63 -2.52 16 22 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 23 C -0.09 -1.11 6.22 -25.07 -0.16 -1.27 16 24 H 0.03 0.58 6.00 -51.93 -0.31 0.27 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.08 1.71 6.25 -51.93 -0.32 1.39 16 30 H 0.06 1.01 4.08 -51.93 -0.21 0.80 16 31 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 32 H 0.07 1.24 5.48 -51.93 -0.28 0.96 16 33 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 34 H 0.08 1.09 6.44 -51.93 -0.33 0.75 16 35 H 0.09 1.11 7.21 -51.93 -0.37 0.73 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 LS Contribution 278.90 15.07 4.20 4.20 Total: -1.00 -29.58 278.90 -7.99 -37.57 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.06 Total: -0.46 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -1.69 Total: -20.52 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.30 Total: -38.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.58 -7.99 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.440 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds