Wall clock time and date at job start Mon Mar 30 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47103 * 2 1 4 4 C 1.50693 * 109.47290 * 120.00565 * 2 1 3 5 5 H 1.08001 * 120.00499 * 120.00055 * 4 2 1 6 6 C 1.37880 * 120.00065 * 299.99794 * 4 2 1 7 7 N 1.31516 * 119.99828 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00415 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46856 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47405 * 120.00010 * 8 6 4 11 11 H 1.48496 * 109.47470 * 240.00713 * 8 6 4 12 12 N 1.46081 * 109.46769 * 240.00652 * 2 1 3 13 13 C 1.46119 * 113.05149 * 187.39235 * 12 2 1 14 14 C 1.52132 * 111.34299 * 291.93131 * 13 12 2 15 15 C 1.52168 * 112.61241 * 307.28750 * 14 13 12 16 16 C 1.52167 * 112.55259 * 45.48937 * 15 14 13 17 17 C 1.46104 * 113.06934 * 59.99934 * 12 2 1 18 18 C 1.52555 * 109.84375 * 191.60392 * 17 12 2 19 19 C 1.52205 * 112.25636 * 306.17077 * 18 17 12 20 20 C 1.52216 * 112.67980 * 46.12576 * 19 18 17 21 21 H 1.08996 * 109.47187 * 59.99559 * 1 2 3 22 22 H 1.09006 * 109.47113 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46876 * 299.99505 * 1 2 3 24 24 H 0.97003 * 119.99801 * 179.97438 * 7 6 4 25 25 H 1.10116 * 108.03076 * 50.69389 * 13 12 2 26 26 H 1.09962 * 108.75320 * 186.55260 * 14 13 12 27 27 H 1.09458 * 109.83570 * 69.66605 * 14 13 12 28 28 H 1.10590 * 108.03913 * 164.69507 * 15 14 13 29 29 H 1.08766 * 110.86953 * 280.68455 * 15 14 13 30 30 H 1.09454 * 109.55893 * 76.92216 * 16 15 14 31 31 H 1.09946 * 108.87764 * 193.73749 * 16 15 14 32 32 H 1.10120 * 108.03193 * 309.19873 * 17 12 2 33 33 H 1.09565 * 109.00463 * 67.50093 * 18 17 12 34 34 H 1.09598 * 108.96403 * 184.94042 * 18 17 12 35 35 H 1.10626 * 107.94522 * 165.22245 * 19 18 17 36 36 H 1.08739 * 110.90397 * 281.15962 * 19 18 17 37 37 H 1.09561 * 109.37515 * 74.83032 * 20 19 18 38 38 H 1.09571 * 109.33907 * 192.71983 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1465 -2.2872 3.6035 10 1 3.1467 -0.1877 4.8165 11 1 1.1662 -1.5871 4.8159 12 7 2.0169 -0.6885 -1.1929 13 6 3.4647 -0.8859 -1.1887 14 6 4.2042 0.4372 -1.3197 15 6 3.7340 1.2546 -2.5139 16 6 2.2173 1.3034 -2.6269 17 6 1.5740 -0.0621 -2.4363 18 6 1.8720 -0.9835 -3.6151 19 6 3.3331 -1.4077 -3.6602 20 6 3.8574 -1.8521 -2.3021 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.7083 1.1606 3.4845 25 1 3.7435 -1.3435 -0.2268 26 1 5.2788 0.2320 -1.4304 27 1 4.0816 1.0235 -0.4035 28 1 4.1015 2.2898 -2.3864 29 1 4.1792 0.8858 -3.4353 30 1 1.8176 2.0085 -1.8914 31 1 1.9469 1.6860 -3.6215 32 1 0.4829 0.0754 -2.3789 33 1 1.2373 -1.8736 -3.5416 34 1 1.6162 -0.4648 -4.5461 35 1 3.4180 -2.2641 -4.3552 36 1 3.9538 -0.6174 -4.0757 37 1 3.4620 -2.8465 -2.0675 38 1 4.9500 -1.9257 -2.3413 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606265260.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:33 Heat of formation + Delta-G solvation = -13.560525 kcal Electronic energy + Delta-G solvation = -16914.792273 eV Core-core repulsion = 14563.091089 eV Total energy + Delta-G solvation = -2351.701184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79899 -34.36008 -32.42895 -32.12166 -31.61117 -28.28578 -25.60947 -25.15785 -23.95342 -21.13996 -20.74008 -19.76203 -17.04473 -16.07311 -15.76796 -14.58646 -14.38614 -13.90605 -13.64643 -12.92168 -12.85816 -12.71551 -12.62573 -12.55119 -11.58082 -11.27644 -11.17142 -10.95865 -10.79012 -10.58303 -10.46400 -10.33585 -10.22396 -9.97358 -9.95128 -9.60216 -9.45811 -9.05592 -8.65365 -8.35226 -6.83065 -5.96800 -4.00534 3.31328 3.39416 3.43512 4.43987 4.95836 5.18866 5.34014 5.39434 5.40929 5.45131 5.64434 5.69111 5.79262 5.85883 6.02063 6.19298 6.31249 6.34350 6.37403 6.39055 6.48508 6.52012 6.57796 6.73075 6.75847 6.83203 6.89775 6.95319 7.10407 7.20787 7.29508 7.68382 7.87668 7.91614 8.35116 8.51091 8.79710 9.09042 9.64696 11.09836 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035608 B = 0.009942 C = 0.009303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.160351 B = 2815.561791 C = 3009.130245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.223 3.777 3 H 0.000 1.000 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.532 5.532 13 C 0.099 3.901 14 C -0.138 4.138 15 C -0.105 4.105 16 C -0.140 4.140 17 C 0.090 3.910 18 C -0.100 4.100 19 C -0.109 4.109 20 C -0.104 4.104 21 H 0.007 0.993 22 H 0.032 0.968 23 H 0.083 0.917 24 H 0.258 0.742 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 -1.291 -10.049 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.117 3.883 3 H 0.018 0.982 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.010 4.010 14 C -0.177 4.177 15 C -0.143 4.143 16 C -0.179 4.179 17 C -0.019 4.019 18 C -0.138 4.138 19 C -0.147 4.147 20 C -0.142 4.142 21 H 0.026 0.974 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.592 -1.618 -9.872 10.629 hybrid contribution 0.638 0.501 0.866 1.186 sum 4.230 -1.117 -9.007 10.013 Atomic orbital electron populations 1.21848 0.98087 0.99464 0.99685 1.18918 0.91792 0.92206 0.85336 0.98199 1.21231 1.30668 1.12096 0.89888 0.91893 1.24915 0.95304 0.95090 0.98912 1.69909 1.37093 1.23142 1.23123 0.86525 0.78580 0.79652 0.83162 1.19772 1.21256 1.21113 1.60398 1.10143 1.53225 1.01792 1.21092 0.88100 0.93101 0.98703 1.21755 0.98959 0.98714 0.98305 1.21211 0.95711 0.98996 0.98376 1.21784 0.95867 0.99415 1.00840 1.21181 0.99223 0.90671 0.90841 1.21327 0.96166 0.99426 0.96920 1.21285 0.96467 0.99979 0.96959 1.21387 0.98842 0.99481 0.94475 0.97427 0.94857 0.89807 0.93168 0.89255 0.93404 0.91620 0.94298 0.92453 0.92246 0.93338 0.90942 0.92179 0.93150 0.94122 0.92458 0.92199 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.76 37.16 0.33 -2.95 16 2 C 0.22 5.58 1.67 -69.31 -0.12 5.47 16 3 H 0.00 0.01 6.37 -51.93 -0.33 -0.32 16 4 C -0.50 -13.58 7.88 -34.44 -0.27 -13.85 16 5 H 0.06 1.71 6.20 -52.49 -0.33 1.39 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.53 -11.38 4.10 -214.69 -0.88 -12.26 16 13 C 0.10 1.94 2.35 -68.80 -0.16 1.78 16 14 C -0.14 -2.54 4.96 -27.60 -0.14 -2.67 16 15 C -0.11 -1.74 5.14 -27.58 -0.14 -1.88 16 16 C -0.14 -2.43 4.94 -27.59 -0.14 -2.57 16 17 C 0.09 1.66 2.41 -68.81 -0.17 1.50 16 18 C -0.10 -1.56 5.50 -27.36 -0.15 -1.71 16 19 C -0.11 -1.60 5.12 -27.54 -0.14 -1.74 16 20 C -0.10 -1.69 5.50 -27.36 -0.15 -1.84 16 21 H 0.01 0.15 6.32 -51.93 -0.33 -0.17 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.09 1.96 5.84 -51.29 -0.30 1.66 16 26 H 0.05 0.78 8.16 -51.38 -0.42 0.36 16 27 H 0.07 1.38 7.61 -51.67 -0.39 0.99 16 28 H 0.04 0.61 8.27 -51.02 -0.42 0.19 16 29 H 0.06 0.85 5.69 -52.06 -0.30 0.55 16 30 H 0.06 1.15 7.40 -51.67 -0.38 0.77 16 31 H 0.05 0.73 8.16 -51.39 -0.42 0.31 16 32 H 0.07 1.40 6.00 -51.29 -0.31 1.09 16 33 H 0.06 0.95 8.19 -51.61 -0.42 0.53 16 34 H 0.05 0.69 8.14 -51.59 -0.42 0.27 16 35 H 0.04 0.53 8.28 -51.00 -0.42 0.11 16 36 H 0.06 0.80 5.66 -52.08 -0.29 0.50 16 37 H 0.06 1.00 8.19 -51.61 -0.42 0.58 16 38 H 0.05 0.74 8.14 -51.61 -0.42 0.32 16 LS Contribution 270.94 15.07 4.08 4.08 Total: -1.00 -27.65 270.94 -8.73 -36.38 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.20 Total: -0.74 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.34 Total: -18.96 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.25 Total: -37.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.65 -8.73 -36.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606265260.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.821 kcal (2) G-P(sol) polarization free energy of solvation -27.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds