Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47290 * 2 1 4 4 C 1.50692 * 109.46931 * 239.99206 * 2 1 3 5 5 H 1.08004 * 120.00112 * 245.22736 * 4 2 1 6 6 C 1.37880 * 120.00313 * 65.23315 * 4 2 1 7 7 N 1.31518 * 119.99745 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00339 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46935 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47048 * 119.99803 * 8 6 4 11 11 H 1.48502 * 109.47034 * 240.00036 * 8 6 4 12 12 N 1.46089 * 109.46430 * 119.99749 * 2 1 3 13 13 C 1.46135 * 113.01145 * 299.92023 * 12 2 1 14 14 C 1.52100 * 111.31641 * 292.35219 * 13 12 2 15 15 C 1.52084 * 112.80012 * 307.68610 * 14 13 12 16 16 C 1.52077 * 112.91264 * 44.37951 * 15 14 13 17 17 C 1.46142 * 113.00404 * 172.66406 * 12 2 1 18 18 C 1.52577 * 109.82656 * 191.36350 * 17 12 2 19 19 C 1.52293 * 112.00391 * 305.48326 * 18 17 12 20 20 C 1.52277 * 112.30550 * 47.30781 * 19 18 17 21 21 H 1.09000 * 109.47292 * 300.01116 * 1 2 3 22 22 H 1.09005 * 109.46693 * 60.00541 * 1 2 3 23 23 H 1.09003 * 109.47773 * 180.02562 * 1 2 3 24 24 H 0.96995 * 120.00056 * 180.02562 * 7 6 4 25 25 H 1.10122 * 108.00435 * 51.11507 * 13 12 2 26 26 H 1.09495 * 109.82611 * 70.28984 * 14 13 12 27 27 H 1.10008 * 108.65799 * 186.96632 * 14 13 12 28 28 H 1.08834 * 110.89842 * 279.21820 * 15 14 13 29 29 H 1.10688 * 107.90620 * 163.54348 * 15 14 13 30 30 H 1.10030 * 108.79416 * 194.99134 * 16 15 14 31 31 H 1.09504 * 109.63670 * 78.36558 * 16 15 14 32 32 H 1.10120 * 108.00930 * 308.90528 * 17 12 2 33 33 H 1.09542 * 109.00316 * 66.56005 * 18 17 12 34 34 H 1.09518 * 109.08397 * 184.21965 * 18 17 12 35 35 H 1.10504 * 108.09790 * 166.47309 * 19 18 17 36 36 H 1.08684 * 110.81578 * 282.75176 * 19 18 17 37 37 H 1.09516 * 109.39763 * 191.65755 * 20 19 18 38 38 H 1.09551 * 109.31196 * 73.61846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5818 -1.6353 -1.1334 6 6 1.7905 -0.1801 -2.4798 7 7 1.1210 0.9457 -2.5979 8 14 2.4137 -1.0606 -4.0049 9 1 3.1315 -2.2971 -3.6039 10 1 1.2644 -1.4162 -4.8755 11 1 3.3400 -0.1686 -4.7476 12 7 2.0168 -0.6886 1.1929 13 6 1.5746 -0.0601 2.4358 14 6 2.2139 1.3075 2.6217 15 6 3.7287 1.2726 2.4915 16 6 4.2023 0.4405 1.3099 17 6 3.4651 -0.8843 1.1883 18 6 3.8612 -1.8432 2.3071 19 6 3.3451 -1.3818 3.6635 20 6 1.8776 -0.9780 3.6167 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3635 -1.0276 0.0005 24 1 0.9505 1.3187 -3.4769 25 1 0.4829 0.0733 2.3802 26 1 1.7985 2.0135 1.8951 27 1 1.9527 1.6851 3.6214 28 1 4.1901 0.9315 3.4163 29 1 4.0812 2.3108 2.3396 30 1 5.2768 0.2356 1.4287 31 1 4.0876 1.0157 0.3852 32 1 3.7430 -1.3479 0.2289 33 1 3.4572 -2.8369 2.0849 34 1 4.9530 -1.9224 2.3409 35 1 3.4474 -2.2221 4.3738 36 1 3.9563 -0.5726 4.0545 37 1 1.6118 -0.4642 4.5466 38 1 1.2568 -1.8772 3.5379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606265261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = -15.123615 kcal Electronic energy + Delta-G solvation = -16919.522649 eV Core-core repulsion = 14567.753684 eV Total energy + Delta-G solvation = -2351.768964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79398 -34.33876 -32.41956 -32.11828 -31.60520 -28.33489 -25.60074 -25.14119 -23.95308 -21.12756 -20.73580 -19.77460 -17.03535 -16.07657 -15.75323 -14.59100 -14.37134 -13.90646 -13.64383 -12.90873 -12.85411 -12.70876 -12.62607 -12.53670 -11.58526 -11.29901 -11.16226 -10.95281 -10.79094 -10.57183 -10.45857 -10.32959 -10.27074 -9.98785 -9.94671 -9.61291 -9.46130 -9.04176 -8.66955 -8.36174 -6.83319 -5.97742 -4.00371 3.31334 3.39489 3.43662 4.44316 4.96462 5.19653 5.34493 5.39552 5.41612 5.44589 5.64827 5.69645 5.79881 5.86484 6.02574 6.19908 6.31575 6.35307 6.37820 6.39651 6.48690 6.52248 6.58471 6.73214 6.76154 6.84385 6.89278 6.95014 7.08887 7.19604 7.28058 7.65438 7.84904 7.91949 8.30837 8.49528 8.79716 9.10139 9.64802 11.10334 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.009991 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.116635 B = 2801.809272 C = 2987.783531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.222 3.778 3 H 0.005 0.995 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.891 3.109 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.532 5.532 13 C 0.090 3.910 14 C -0.139 4.139 15 C -0.104 4.104 16 C -0.138 4.138 17 C 0.100 3.900 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.101 4.101 21 H 0.009 0.991 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.258 0.742 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -1.455 10.090 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 H 0.023 0.977 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.256 5.256 13 C -0.020 4.020 14 C -0.178 4.178 15 C -0.142 4.142 16 C -0.177 4.177 17 C -0.009 4.009 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.139 4.139 21 H 0.028 0.972 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.352 -1.771 9.915 10.615 hybrid contribution 0.643 0.524 -0.888 1.216 sum 3.996 -1.247 9.027 9.950 Atomic orbital electron populations 1.21802 0.98303 0.99339 0.99265 1.18929 0.91567 0.92512 0.85376 0.97742 1.21201 1.34490 1.08155 0.90053 0.91928 1.24923 0.95397 0.94988 0.98896 1.69940 1.40692 1.19297 1.23335 0.86542 0.78540 0.79725 0.83224 1.19750 1.21130 1.21250 1.60465 1.10182 1.53130 1.01790 1.21190 0.99192 0.90683 0.90886 1.21760 0.95874 0.99398 1.00815 1.21181 0.95677 0.98977 0.98349 1.21735 0.98924 0.98632 0.98404 1.21077 0.88062 0.93120 0.98641 1.21406 0.98874 0.99472 0.94482 1.21310 0.96480 1.00045 0.96977 1.21347 0.96147 0.99488 0.96898 0.97234 0.90728 0.94732 0.93170 0.90982 0.92249 0.93376 0.92533 0.94333 0.93458 0.91559 0.89257 0.92207 0.93070 0.94075 0.92393 0.93123 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.81 37.16 0.33 -2.82 16 2 C 0.22 5.53 1.56 -69.31 -0.11 5.43 16 3 H 0.00 0.14 6.37 -51.93 -0.33 -0.19 16 4 C -0.50 -13.56 7.69 -34.44 -0.26 -13.82 16 5 H 0.06 1.71 6.43 -52.48 -0.34 1.37 16 6 C 0.06 1.62 5.32 -17.82 -0.09 1.53 16 7 N -0.89 -25.55 11.71 55.43 0.65 -24.90 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.53 -11.35 4.12 -214.65 -0.88 -12.24 16 13 C 0.09 1.65 2.40 -68.79 -0.17 1.49 16 14 C -0.14 -2.42 4.91 -27.66 -0.14 -2.56 16 15 C -0.10 -1.73 5.09 -27.67 -0.14 -1.87 16 16 C -0.14 -2.54 4.92 -27.66 -0.14 -2.68 16 17 C 0.10 1.96 2.35 -68.80 -0.16 1.80 16 18 C -0.10 -1.70 5.50 -27.31 -0.15 -1.85 16 19 C -0.11 -1.62 5.17 -27.46 -0.14 -1.76 16 20 C -0.10 -1.57 5.50 -27.30 -0.15 -1.72 16 21 H 0.01 0.20 6.32 -51.93 -0.33 -0.13 16 22 H 0.07 1.99 6.50 -51.93 -0.34 1.65 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.07 1.38 6.00 -51.29 -0.31 1.07 16 26 H 0.06 1.15 7.44 -51.65 -0.38 0.77 16 27 H 0.05 0.73 8.16 -51.36 -0.42 0.31 16 28 H 0.06 0.84 5.76 -52.02 -0.30 0.54 16 29 H 0.04 0.61 8.28 -50.96 -0.42 0.19 16 30 H 0.05 0.77 8.17 -51.34 -0.42 0.36 16 31 H 0.07 1.41 7.63 -51.64 -0.39 1.02 16 32 H 0.09 1.96 5.94 -51.29 -0.30 1.66 16 33 H 0.06 1.00 8.19 -51.62 -0.42 0.57 16 34 H 0.05 0.74 8.14 -51.64 -0.42 0.32 16 35 H 0.04 0.53 8.27 -51.07 -0.42 0.11 16 36 H 0.06 0.81 5.60 -52.11 -0.29 0.52 16 37 H 0.05 0.69 8.14 -51.64 -0.42 0.27 16 38 H 0.06 0.95 8.19 -51.62 -0.42 0.53 16 LS Contribution 271.87 15.07 4.10 4.10 Total: -1.00 -27.67 271.87 -8.72 -36.39 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.24 Total: -0.85 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.32 Total: -18.85 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.23 Total: -37.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.67 -8.72 -36.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606265261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.268 kcal (2) G-P(sol) polarization free energy of solvation -27.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds