Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99678 * 2 1 4 4 C 1.52995 * 109.46952 * 293.94773 * 3 2 1 5 5 C 1.50700 * 109.47091 * 180.02562 * 4 3 2 6 6 H 1.07992 * 120.00048 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00333 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47056 * 89.99955 * 9 7 5 11 11 H 1.48495 * 109.47217 * 210.00221 * 9 7 5 12 12 H 1.48504 * 109.46972 * 330.00076 * 9 7 5 13 13 C 1.46897 * 111.00007 * 123.94745 * 2 1 3 14 14 C 1.53004 * 109.47261 * 163.97657 * 13 2 1 15 15 H 1.09006 * 109.63829 * 54.29452 * 14 13 2 16 16 C 1.53020 * 109.64328 * 293.66090 * 14 13 2 17 17 C 1.50068 * 110.15088 * 190.87649 * 16 14 13 18 18 C 1.29442 * 124.07230 * 17.13102 * 17 16 14 19 19 C 1.50073 * 124.07593 * 359.53223 * 18 17 16 20 20 C 1.53025 * 110.14643 * 17.13154 * 19 18 17 21 21 H 1.08995 * 109.47085 * 65.88171 * 1 2 3 22 22 H 1.08998 * 109.47036 * 305.87999 * 1 2 3 23 23 H 1.09003 * 109.46575 * 185.88113 * 1 2 3 24 24 H 1.08999 * 109.47446 * 53.95405 * 3 2 1 25 25 H 1.08998 * 109.46959 * 173.95398 * 3 2 1 26 26 H 1.08999 * 109.47561 * 300.00562 * 4 3 2 27 27 H 1.09003 * 109.47251 * 60.00528 * 4 3 2 28 28 H 0.97003 * 119.99789 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47479 * 283.98018 * 13 2 1 30 30 H 1.08999 * 109.47163 * 43.97874 * 13 2 1 31 31 H 1.09001 * 109.36032 * 311.08636 * 16 14 13 32 32 H 1.09003 * 109.35777 * 70.66876 * 16 14 13 33 33 H 1.07998 * 117.96419 * 197.15303 * 17 16 14 34 34 H 1.07995 * 117.96317 * 179.55479 * 18 17 16 35 35 H 1.08999 * 109.35730 * 256.92522 * 19 18 17 36 36 H 1.08996 * 109.24501 * 137.26670 * 19 18 17 37 37 H 1.09002 * 109.63682 * 190.88291 * 20 19 18 38 38 H 1.08999 * 109.64370 * 70.24762 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3186 6 1 2.7205 3.8320 -0.4642 7 6 1.9661 4.2815 -2.4097 8 7 1.2985 3.8334 -3.4505 9 14 2.6367 6.0251 -2.4104 10 1 4.0081 6.0277 -2.9799 11 1 1.7572 6.8934 -3.2336 12 1 2.6779 6.5401 -1.0182 13 6 1.9954 -0.7658 1.1376 14 6 3.4726 -1.0846 0.8981 15 1 4.0179 -0.1630 0.6945 16 6 3.6067 -2.0399 -0.2897 17 6 5.0089 -2.5681 -0.3727 18 6 5.8619 -2.5166 0.5996 19 6 5.5711 -1.9125 1.9422 20 6 4.0604 -1.7681 2.1392 21 1 -0.3633 0.4199 -0.9379 22 1 -0.3633 0.6023 0.8327 23 1 -0.3632 -1.0223 0.1053 24 1 1.5610 1.9274 0.8309 25 1 3.0796 1.3445 0.1082 26 1 2.0658 1.5015 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.1534 4.4086 -4.2179 29 1 1.8939 -0.1777 2.0498 30 1 1.4353 -1.6952 1.2404 31 1 2.9140 -2.8721 -0.1641 32 1 3.3659 -1.5080 -1.2101 33 1 5.3261 -3.0188 -1.3014 34 1 6.8441 -2.9340 0.4341 35 1 6.0392 -0.9302 2.0055 36 1 5.9770 -2.5572 2.7217 37 1 3.8626 -1.1590 3.0212 38 1 3.6111 -2.7535 2.2622 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612144481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = -6.482692 kcal Electronic energy + Delta-G solvation = -15474.878328 eV Core-core repulsion = 13123.484062 eV Total energy + Delta-G solvation = -2351.394266 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86077 -36.58713 -33.09280 -31.60455 -30.57872 -29.45797 -26.38012 -25.13374 -23.24379 -22.25920 -20.85521 -19.53623 -17.68949 -16.38966 -15.88103 -14.90997 -14.67525 -14.34841 -14.12749 -13.67598 -13.23045 -13.06243 -12.47191 -12.34205 -12.19311 -12.03958 -11.66729 -11.37587 -11.21528 -11.05592 -10.89592 -10.53834 -10.37982 -10.15324 -9.97330 -9.69194 -9.30427 -9.07458 -8.82136 -8.29925 -7.63934 -5.96602 -3.98674 2.44577 3.33855 3.39860 3.43028 4.41635 4.56880 4.86143 4.89420 5.10334 5.38396 5.39328 5.47082 5.50167 5.64939 5.68574 5.82329 5.90731 5.93005 5.95283 6.01750 6.07201 6.13454 6.30618 6.34426 6.48435 6.52643 6.57873 6.64909 6.81831 7.05790 7.13105 7.57005 7.64407 7.84420 7.95367 8.12686 8.47855 9.08811 9.64756 11.14823 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.006109 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.669399 B = 4582.610392 C = 4987.973538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.541 5.541 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.060 3.940 14 C -0.083 4.083 15 H 0.077 0.923 16 C -0.077 4.077 17 C -0.144 4.144 18 C -0.171 4.171 19 C -0.087 4.087 20 C -0.114 4.114 21 H 0.075 0.925 22 H 0.017 0.983 23 H 0.053 0.947 24 H 0.017 0.983 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -12.244 9.433 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.265 5.265 3 C -0.065 4.065 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.068 4.068 14 C -0.102 4.102 15 H 0.095 0.905 16 C -0.114 4.114 17 C -0.162 4.162 18 C -0.189 4.189 19 C -0.124 4.124 20 C -0.152 4.152 21 H 0.094 0.906 22 H 0.036 0.964 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.416 -12.420 8.826 15.864 hybrid contribution 0.155 1.386 0.581 1.511 sum 4.572 -11.034 9.407 15.203 Atomic orbital electron populations 1.22338 0.88138 0.99917 1.01521 1.62076 1.07244 1.16002 1.41207 1.22391 0.98693 0.85230 1.00184 1.19078 0.96851 0.93961 0.91029 1.21208 1.34972 0.97910 1.01889 0.92892 1.24986 0.95311 0.98393 0.95591 1.69974 1.40870 1.36402 1.06047 0.86619 0.78879 0.84702 0.77942 1.20650 1.21234 1.19958 1.22135 0.95105 0.97468 0.92120 1.21217 0.95524 0.98947 0.94509 0.90458 1.20383 0.93092 0.98106 0.99848 1.22225 0.96436 0.99536 0.98027 1.21964 0.99112 1.02181 0.95692 1.20400 0.96450 1.00497 0.95083 1.21636 0.95126 1.00585 0.97898 0.90590 0.96420 0.92829 0.96460 0.92041 0.95797 0.96555 0.93045 0.95519 0.91805 0.91466 0.89584 0.88381 0.88607 0.91109 0.91663 0.92024 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.24 60.06 0.55 1.05 16 2 N -0.54 -9.92 4.44 -242.92 -1.08 -11.00 16 3 C 0.06 1.33 4.75 -3.82 -0.02 1.31 16 4 C 0.03 0.75 4.89 -27.89 -0.14 0.61 16 5 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 0.90 4.37 -3.82 -0.02 0.88 16 14 C -0.08 -1.18 2.26 -90.40 -0.20 -1.38 16 15 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 16 C -0.08 -1.09 5.23 -28.18 -0.15 -1.23 16 17 C -0.14 -1.85 9.80 -35.90 -0.35 -2.21 16 18 C -0.17 -2.04 9.80 -35.90 -0.35 -2.40 16 19 C -0.09 -0.97 6.12 -28.17 -0.17 -1.14 16 20 C -0.11 -1.33 5.31 -26.51 -0.14 -1.48 16 21 H 0.08 1.43 6.76 -51.93 -0.35 1.08 16 22 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 23 H 0.05 0.77 7.86 -51.93 -0.41 0.36 16 24 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 25 H 0.06 1.32 6.33 -51.93 -0.33 0.99 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.45 6.68 -51.93 -0.35 0.10 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 30 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 31 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 32 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 33 H 0.10 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -29.86 299.91 -9.00 -38.87 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.77 Total: -3.15 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.40 Total: -19.67 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.34 Total: -37.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.86 -9.00 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612144481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.383 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds