Wall clock time and date at job start Mon Mar 30 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46969 * 2 1 4 4 C 1.46852 * 111.00296 * 170.00236 * 3 2 1 5 5 C 1.53032 * 109.52406 * 185.83897 * 4 3 2 6 6 C 1.53119 * 109.28030 * 300.81896 * 5 4 3 7 7 C 1.52999 * 109.52194 * 177.56118 * 6 5 4 8 8 C 1.50706 * 109.47163 * 175.00298 * 7 6 5 9 9 C 1.35028 * 120.00338 * 124.72501 * 8 7 6 10 10 C 1.40065 * 120.00123 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00172 * 359.97438 * 10 9 8 12 12 C 1.40311 * 120.00164 * 179.97438 * 10 9 8 13 13 N 1.30690 * 119.99632 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00349 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46847 * 89.99907 * 14 12 10 16 16 H 1.48493 * 109.47164 * 210.00338 * 14 12 10 17 17 H 1.48502 * 109.46888 * 330.00222 * 14 12 10 18 18 C 1.53117 * 109.15835 * 57.65953 * 6 5 4 19 19 C 1.46852 * 111.00141 * 294.21235 * 3 2 1 20 20 H 1.08995 * 109.46871 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46618 * 299.99986 * 1 2 3 22 22 H 1.09001 * 109.47640 * 59.99653 * 1 2 3 23 23 H 1.08993 * 109.46926 * 240.00440 * 2 1 3 24 24 H 1.08999 * 109.47338 * 119.99897 * 2 1 3 25 25 H 1.09003 * 109.45953 * 65.82394 * 4 3 2 26 26 H 1.08995 * 109.44982 * 305.85465 * 4 3 2 27 27 H 1.09004 * 109.50018 * 180.88029 * 5 4 3 28 28 H 1.08999 * 109.50722 * 60.76595 * 5 4 3 29 29 H 1.08999 * 109.52263 * 297.68604 * 6 5 4 30 30 H 1.08997 * 109.47394 * 54.99857 * 7 6 5 31 31 H 1.09004 * 109.47644 * 294.99929 * 7 6 5 32 32 H 1.08000 * 119.99302 * 304.99998 * 8 7 6 33 33 H 1.08004 * 119.99705 * 359.97438 * 9 8 7 34 34 H 0.97009 * 119.99623 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.51064 * 62.28664 * 18 6 5 36 36 H 1.09003 * 109.49931 * 182.40722 * 18 6 5 37 37 H 1.08995 * 109.46211 * 294.17803 * 19 3 2 38 38 H 1.09000 * 109.45856 * 54.14409 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4680 1.4312 0.2380 5 6 3.9174 2.8876 0.3761 6 6 3.5674 3.6484 -0.9058 7 6 3.9593 5.1192 -0.7505 8 6 3.7285 5.8408 -2.0533 9 6 2.9455 6.9403 -2.0867 10 6 2.7306 7.6106 -3.2976 11 1 3.1915 7.2483 -4.2046 12 6 1.9165 8.7528 -3.3323 13 7 1.3591 9.1916 -2.2347 14 14 1.6304 9.6473 -4.9472 15 1 0.4361 9.0794 -5.6226 16 1 1.4088 11.0912 -4.6807 17 1 2.8191 9.4820 -5.8218 18 6 2.0606 3.5440 -1.1566 19 6 1.6650 2.0686 -1.2504 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.9887 0.9684 -0.6003 26 1 3.7026 0.8902 1.1546 27 1 4.9949 2.9221 0.5372 28 1 3.4074 3.3471 1.2228 29 1 4.1086 3.2140 -1.7464 30 1 5.0126 5.1879 -0.4787 31 1 3.3520 5.5766 0.0306 32 1 4.1859 5.4758 -2.9610 33 1 2.4842 7.3024 -1.1797 34 1 0.7965 9.9815 -2.2587 35 1 1.5213 4.0138 -0.3341 36 1 1.8115 4.0476 -2.0907 37 1 2.1941 1.6028 -2.0816 38 1 0.5902 1.9905 -1.4147 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687681490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:37 Heat of formation + Delta-G solvation = -21.514854 kcal Electronic energy + Delta-G solvation = -15254.278900 eV Core-core repulsion = 12902.232791 eV Total energy + Delta-G solvation = -2352.046109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.91694 -35.29570 -33.89502 -31.76165 -30.42349 -29.77253 -27.10455 -24.24219 -22.98523 -21.99713 -20.78569 -19.16231 -18.19515 -16.77189 -15.87646 -15.06155 -14.80886 -14.29934 -13.86434 -13.51600 -13.39906 -12.94874 -12.77962 -12.19540 -11.89075 -11.73267 -11.60989 -11.33840 -11.25355 -11.01994 -10.78923 -10.66834 -10.38862 -10.12759 -9.82017 -9.70319 -9.40936 -9.35634 -9.12710 -8.14615 -7.51469 -6.66057 -4.15234 3.00469 3.12930 3.18305 3.98302 4.04398 4.05738 4.97199 5.17240 5.19615 5.34071 5.42114 5.48336 5.53366 5.64275 5.72854 5.78371 5.83146 5.94971 5.96179 6.12283 6.17999 6.26563 6.39001 6.49330 6.66838 6.76560 6.90441 7.07874 7.09708 7.27304 7.29650 7.33852 7.36699 7.47407 8.10371 8.51937 8.78541 9.19097 9.38256 10.37923 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039535 B = 0.005168 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.070393 B = 5416.699081 C = 5819.599371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.033 4.033 8 C -0.417 4.417 9 C 0.053 3.947 10 C -0.464 4.464 11 H 0.066 0.934 12 C 0.072 3.928 13 N -0.825 5.825 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.102 4.102 19 C 0.054 3.946 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.279 0.721 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -13.099 3.612 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.069 4.069 5 C -0.152 4.152 6 C -0.098 4.098 7 C -0.070 4.070 8 C -0.439 4.439 9 C 0.033 3.967 10 C -0.495 4.495 11 H 0.084 0.916 12 C -0.143 4.143 13 N -0.453 5.453 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.140 4.140 19 C -0.074 4.074 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.990 -12.655 4.089 13.336 hybrid contribution 0.204 0.025 -1.439 1.453 sum -0.786 -12.630 2.651 12.930 Atomic orbital electron populations 1.21807 0.95071 1.01080 1.02718 1.22035 0.96066 0.89526 1.00135 1.61986 1.13941 1.14559 1.35951 1.22069 0.87270 0.97980 0.99572 1.21708 0.99872 0.93954 0.99617 1.21206 0.95740 0.97338 0.95565 1.19995 0.97507 0.92185 0.97309 1.21951 1.20105 1.06715 0.95114 1.19912 0.90199 0.90905 0.95727 1.19574 1.25230 1.08346 0.96378 0.91574 1.26078 0.93729 0.96967 0.97546 1.69574 1.25381 1.21645 1.28654 0.86305 0.79563 0.78411 0.82282 1.19540 1.20369 1.18701 1.21542 0.96132 0.93268 1.03028 1.22226 1.00200 0.95915 0.89030 0.92704 0.91862 0.92497 0.95455 0.91274 0.95479 0.91586 0.92184 0.91472 0.92743 0.95473 0.94069 0.91325 0.90466 0.91064 0.91816 0.90370 0.95527 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.84 37.16 0.37 -1.20 16 2 C 0.05 0.59 5.68 -3.82 -0.02 0.56 16 3 N -0.54 -7.66 4.66 -234.67 -1.09 -8.75 16 4 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 5 C -0.11 -1.74 5.38 -26.65 -0.14 -1.88 16 6 C -0.08 -1.45 2.24 -90.50 -0.20 -1.65 16 7 C -0.03 -0.70 5.15 -27.88 -0.14 -0.84 16 8 C -0.42 -10.53 8.32 -35.45 -0.30 -10.82 16 9 C 0.05 1.46 9.00 -40.04 -0.36 1.10 16 10 C -0.46 -13.10 9.05 -38.12 -0.35 -13.44 16 11 H 0.07 1.84 7.85 -52.48 -0.41 1.43 16 12 C 0.07 1.93 5.50 -17.26 -0.09 1.83 16 13 N -0.83 -22.59 12.86 55.57 0.71 -21.88 16 14 Si 0.91 19.76 29.56 -169.99 -5.03 14.74 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.10 -1.85 5.15 -26.65 -0.14 -1.99 16 19 C 0.05 0.82 5.29 -3.83 -0.02 0.80 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 23 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 24 H 0.07 0.72 7.99 -51.93 -0.41 0.31 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.90 7.84 -51.93 -0.41 0.49 16 32 H 0.07 1.79 8.05 -52.49 -0.42 1.37 16 33 H 0.08 2.24 7.27 -52.48 -0.38 1.86 16 34 H 0.28 6.94 8.29 -40.82 -0.34 6.60 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.58 7.48 -51.93 -0.39 1.20 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 1.03 6.21 -51.93 -0.32 0.70 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -27.69 301.31 -9.14 -36.83 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.86 Total: 1.26 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.42 Total: -26.74 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: -0.38 Total: -30.63 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.69 -9.14 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.316 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds