Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47296 * 2 1 4 4 C 1.50705 * 109.47413 * 239.99969 * 2 1 3 5 5 H 1.07996 * 120.00124 * 239.99744 * 4 2 1 6 6 C 1.37877 * 119.99555 * 60.00157 * 4 2 1 7 7 N 1.31511 * 120.00227 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99518 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47538 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47033 * 120.00021 * 8 6 4 11 11 H 1.48505 * 109.47173 * 239.99454 * 8 6 4 12 12 N 1.46905 * 109.47229 * 120.00116 * 2 1 3 13 13 C 1.48554 * 110.99847 * 58.53754 * 12 2 1 14 14 C 1.54377 * 104.59636 * 200.96017 * 13 12 2 15 15 C 1.54263 * 105.05804 * 23.85720 * 14 13 12 16 16 C 1.48562 * 110.99590 * 303.12056 * 12 2 1 17 17 H 1.08994 * 110.41360 * 40.26369 * 16 12 2 18 18 C 1.52998 * 110.51535 * 277.86569 * 16 12 2 19 19 C 1.53775 * 113.61513 * 168.68635 * 18 16 12 20 20 C 1.53961 * 87.01961 * 220.05025 * 19 18 16 21 21 C 1.53780 * 113.61057 * 71.07702 * 18 16 12 22 22 H 1.09001 * 109.47043 * 302.50881 * 1 2 3 23 23 H 1.09000 * 109.47070 * 62.51218 * 1 2 3 24 24 H 1.08999 * 109.46568 * 182.51204 * 1 2 3 25 25 H 0.97003 * 120.00077 * 180.02562 * 7 6 4 26 26 H 1.09007 * 110.41087 * 82.18924 * 13 12 2 27 27 H 1.08999 * 110.41780 * 319.74326 * 13 12 2 28 28 H 1.08998 * 110.32887 * 264.96125 * 14 13 12 29 29 H 1.09002 * 110.41079 * 142.79295 * 14 13 12 30 30 H 1.09008 * 110.32407 * 241.10319 * 15 14 13 31 31 H 1.08994 * 110.41090 * 118.93928 * 15 14 13 32 32 H 1.09000 * 112.85323 * 299.88812 * 18 16 12 33 33 H 1.08999 * 113.61806 * 334.56698 * 19 18 16 34 34 H 1.09001 * 113.61522 * 105.47699 * 19 18 16 35 35 H 1.08999 * 113.53462 * 270.80813 * 20 19 18 36 36 H 1.09002 * 113.74127 * 139.94459 * 20 19 18 37 37 H 1.08999 * 113.62097 * 254.53221 * 21 18 16 38 38 H 1.09007 * 113.61321 * 25.35430 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2870 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 1.5147 -2.0886 1.2516 14 6 1.6328 -2.4899 2.7376 15 6 1.6117 -1.1578 3.5153 16 6 1.4827 -0.0638 2.4337 17 1 0.4375 0.2127 2.2956 18 6 2.3124 1.1638 2.8148 19 6 1.6672 2.0271 3.9116 20 6 2.1464 3.2545 3.1152 21 6 2.1169 2.3581 1.8660 22 1 -0.3633 0.5523 0.8666 23 1 -0.3633 0.4743 -0.9116 24 1 -0.3632 -1.0267 0.0450 25 1 0.7082 1.1609 -3.4844 26 1 2.1317 -2.7395 0.6319 27 1 0.4745 -2.1290 0.9284 28 1 2.5707 -3.0165 2.9142 29 1 0.7882 -3.1132 3.0313 30 1 2.5393 -1.0306 4.0736 31 1 0.7567 -1.1254 4.1905 32 1 3.3586 0.9249 3.0060 33 1 0.5823 1.9339 3.9591 34 1 2.1450 1.9241 4.8859 35 1 3.1471 3.5881 3.3899 36 1 1.4221 4.0686 3.0857 37 1 2.9570 2.5219 1.1911 38 1 1.1556 2.3547 1.3520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688949036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = 20.661645 kcal Electronic energy + Delta-G solvation = -16450.336845 eV Core-core repulsion = 14100.119646 eV Total energy + Delta-G solvation = -2350.217199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39658 -36.94673 -33.70817 -31.18030 -28.93592 -27.23602 -25.25749 -25.07968 -24.06100 -21.73948 -19.96457 -19.00124 -18.64970 -15.95436 -15.66070 -15.16527 -14.82370 -14.07751 -13.64477 -13.14057 -12.86910 -12.45086 -12.00344 -11.94547 -11.66570 -11.56412 -11.40039 -10.94101 -10.75666 -10.55294 -10.54292 -10.43871 -10.20725 -9.96073 -9.75802 -9.73531 -9.58978 -9.42166 -8.69530 -8.31978 -7.14570 -5.96832 -3.99832 3.31686 3.39640 3.44442 4.45012 4.86228 5.04464 5.13514 5.26174 5.35051 5.36571 5.47000 5.60410 5.74989 5.91465 5.96783 6.08151 6.16296 6.20709 6.24570 6.28606 6.38796 6.42392 6.61095 6.67351 6.68280 6.77854 6.78084 6.85577 6.95644 7.04690 7.20575 7.51665 7.76909 7.91595 8.15095 8.45839 8.64967 9.07024 9.64998 11.10061 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.009615 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.615443 B = 2911.290094 C = 3551.656572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.195 3.805 3 H 0.054 0.946 4 C -0.497 4.497 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.497 5.497 13 C 0.040 3.960 14 C -0.127 4.127 15 C -0.116 4.116 16 C 0.061 3.939 17 H 0.052 0.948 18 C -0.084 4.084 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.128 4.128 22 H 0.011 0.989 23 H 0.088 0.912 24 H 0.029 0.971 25 H 0.258 0.742 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -0.037 10.853 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 H 0.071 0.929 4 C -0.536 4.536 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.221 5.221 13 C -0.088 4.088 14 C -0.165 4.165 15 C -0.154 4.154 16 C -0.048 4.048 17 H 0.070 0.930 18 C -0.103 4.103 19 C -0.174 4.174 20 C -0.184 4.184 21 C -0.166 4.166 22 H 0.030 0.970 23 H 0.107 0.893 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.664 0.097 10.665 10.686 hybrid contribution -0.687 -0.456 -0.985 1.285 sum -0.023 -0.359 9.680 9.686 Atomic orbital electron populations 1.22456 1.01365 0.98836 1.00902 1.19538 0.89552 0.95682 0.86394 0.92866 1.21185 1.30225 1.12294 0.89870 0.92183 1.24914 0.95337 0.95164 0.98918 1.69889 1.37244 1.23162 1.23121 0.86515 0.78511 0.79707 0.83111 1.19819 1.21260 1.21125 1.65601 1.53690 1.00926 1.01871 1.22930 0.99202 0.92638 0.94043 1.22343 1.00709 0.96870 0.96625 1.22277 1.00776 0.94960 0.97390 1.22669 0.96903 0.93541 0.91661 0.92993 1.22346 0.99319 0.93100 0.95537 1.22951 1.00363 0.96768 0.97341 1.22889 1.00723 0.96605 0.98160 1.22912 1.02817 0.95131 0.95703 0.97041 0.89314 0.95189 0.93181 0.90966 0.93709 0.92064 0.92692 0.91903 0.92739 0.89524 0.90694 0.92245 0.90839 0.92168 0.91445 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.28 8.27 37.16 0.31 -3.98 16 2 C 0.20 4.86 2.07 -68.86 -0.14 4.72 16 3 H 0.05 1.43 5.44 -51.93 -0.28 1.15 16 4 C -0.50 -13.69 8.11 -34.44 -0.28 -13.97 16 5 H 0.06 1.68 7.05 -52.49 -0.37 1.31 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.49 11.30 55.43 0.63 -24.86 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.50 -10.78 5.10 -215.61 -1.10 -11.88 16 13 C 0.04 0.80 5.57 -2.19 -0.01 0.79 16 14 C -0.13 -2.04 7.00 -25.35 -0.18 -2.22 16 15 C -0.12 -1.81 6.48 -25.35 -0.16 -1.97 16 16 C 0.06 1.12 1.90 -66.07 -0.13 0.99 16 17 H 0.05 1.02 5.55 -51.93 -0.29 0.73 16 18 C -0.08 -1.40 3.22 -89.81 -0.29 -1.69 16 19 C -0.14 -1.89 7.59 -25.83 -0.20 -2.08 16 20 C -0.15 -2.05 8.09 -25.82 -0.21 -2.26 16 21 C -0.13 -2.25 5.57 -25.92 -0.14 -2.39 16 22 H 0.01 0.24 6.12 -51.93 -0.32 -0.07 16 23 H 0.09 2.39 6.01 -51.93 -0.31 2.07 16 24 H 0.03 0.71 5.90 -51.93 -0.31 0.40 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.07 1.51 7.49 -51.93 -0.39 1.12 16 27 H 0.04 0.94 5.54 -51.93 -0.29 0.65 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.93 7.86 -51.92 -0.41 0.52 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 38 H 0.08 1.62 7.46 -51.93 -0.39 1.24 16 LS Contribution 282.27 15.07 4.25 4.25 Total: -1.00 -27.84 282.27 -9.05 -36.89 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.28 Total: 1.63 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -1.53 Total: -22.58 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.47 Total: -36.74 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.84 -9.05 -36.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688949036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.552 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds