Wall clock time and date at job start Mon Mar 30 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47296 * 2 1 4 4 C 1.50705 * 109.47413 * 239.99969 * 2 1 3 5 5 H 1.07996 * 120.00124 * 239.99744 * 4 2 1 6 6 C 1.37877 * 119.99555 * 60.00157 * 4 2 1 7 7 N 1.31511 * 120.00227 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99518 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47538 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47033 * 120.00021 * 8 6 4 11 11 H 1.48505 * 109.47173 * 239.99454 * 8 6 4 12 12 N 1.46905 * 109.47229 * 120.00116 * 2 1 3 13 13 C 1.48554 * 110.99847 * 58.53754 * 12 2 1 14 14 C 1.54377 * 104.59636 * 200.96017 * 13 12 2 15 15 C 1.54263 * 105.05804 * 23.85720 * 14 13 12 16 16 C 1.48562 * 110.99590 * 303.12056 * 12 2 1 17 17 H 1.08994 * 110.41360 * 40.26369 * 16 12 2 18 18 C 1.52998 * 110.51535 * 277.86569 * 16 12 2 19 19 C 1.53775 * 113.61513 * 168.68635 * 18 16 12 20 20 C 1.53961 * 87.01961 * 220.05025 * 19 18 16 21 21 C 1.53780 * 113.61057 * 71.07702 * 18 16 12 22 22 H 1.09001 * 109.47043 * 302.50881 * 1 2 3 23 23 H 1.09000 * 109.47070 * 62.51218 * 1 2 3 24 24 H 1.08999 * 109.46568 * 182.51204 * 1 2 3 25 25 H 0.97003 * 120.00077 * 180.02562 * 7 6 4 26 26 H 1.09007 * 110.41087 * 82.18924 * 13 12 2 27 27 H 1.08999 * 110.41780 * 319.74326 * 13 12 2 28 28 H 1.08998 * 110.32887 * 264.96125 * 14 13 12 29 29 H 1.09002 * 110.41079 * 142.79295 * 14 13 12 30 30 H 1.09008 * 110.32407 * 241.10319 * 15 14 13 31 31 H 1.08994 * 110.41090 * 118.93928 * 15 14 13 32 32 H 1.09000 * 112.85323 * 299.88812 * 18 16 12 33 33 H 1.08999 * 113.61806 * 334.56698 * 19 18 16 34 34 H 1.09001 * 113.61522 * 105.47699 * 19 18 16 35 35 H 1.08999 * 113.53462 * 270.80813 * 20 19 18 36 36 H 1.09002 * 113.74127 * 139.94459 * 20 19 18 37 37 H 1.08999 * 113.62097 * 254.53221 * 21 18 16 38 38 H 1.09007 * 113.61321 * 25.35430 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2870 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 1.5147 -2.0886 1.2516 14 6 1.6328 -2.4899 2.7376 15 6 1.6117 -1.1578 3.5153 16 6 1.4827 -0.0638 2.4337 17 1 0.4375 0.2127 2.2956 18 6 2.3124 1.1638 2.8148 19 6 1.6672 2.0271 3.9116 20 6 2.1464 3.2545 3.1152 21 6 2.1169 2.3581 1.8660 22 1 -0.3633 0.5523 0.8666 23 1 -0.3633 0.4743 -0.9116 24 1 -0.3632 -1.0267 0.0450 25 1 0.7082 1.1609 -3.4844 26 1 2.1317 -2.7395 0.6319 27 1 0.4745 -2.1290 0.9284 28 1 2.5707 -3.0165 2.9142 29 1 0.7882 -3.1132 3.0313 30 1 2.5393 -1.0306 4.0736 31 1 0.7567 -1.1254 4.1905 32 1 3.3586 0.9249 3.0060 33 1 0.5823 1.9339 3.9591 34 1 2.1450 1.9241 4.8859 35 1 3.1471 3.5881 3.3899 36 1 1.4221 4.0686 3.0857 37 1 2.9570 2.5219 1.1911 38 1 1.1556 2.3547 1.3520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688949036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:05 Heat of formation + Delta-G solvation = 4.527180 kcal Electronic energy + Delta-G solvation = -16451.036488 eV Core-core repulsion = 14100.119646 eV Total energy + Delta-G solvation = -2350.916842 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85358 -38.36749 -35.59746 -33.05191 -30.35057 -29.00488 -27.31273 -26.40497 -25.39903 -23.44316 -21.40121 -20.40346 -20.22947 -18.00305 -17.32345 -16.58838 -16.39169 -15.75887 -15.08759 -14.90085 -14.42140 -14.12092 -13.49732 -13.42842 -13.24704 -13.03436 -12.98666 -12.78634 -12.41349 -12.32046 -12.15175 -12.07088 -11.81901 -11.60400 -11.39164 -11.22776 -11.00144 -10.75012 -10.63094 -10.40982 -8.87778 -8.10159 -6.20192 1.38087 1.40106 1.51675 2.42064 3.18619 3.42150 3.75886 3.88881 4.00083 4.02659 4.13186 4.28902 4.38595 4.46191 4.68620 4.78125 4.85244 4.88984 4.94417 4.95776 4.98894 5.08058 5.09912 5.11160 5.15865 5.21866 5.27251 5.34678 5.41851 5.50214 5.59891 5.70567 5.77954 5.90452 6.20853 6.51495 6.76801 6.95208 7.48884 8.95670 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.009615 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.615443 B = 2911.290094 C = 3551.656572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.202 3.798 3 H 0.028 0.972 4 C -0.514 4.514 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.512 5.512 13 C 0.036 3.964 14 C -0.118 4.118 15 C -0.108 4.108 16 C 0.058 3.942 17 H 0.038 0.962 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.141 4.141 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -0.558 12.852 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 H 0.046 0.954 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.235 5.235 13 C -0.092 4.092 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.051 4.051 17 H 0.055 0.945 18 C -0.106 4.106 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.179 4.179 22 H 0.045 0.955 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.934 -0.428 12.678 12.720 hybrid contribution -0.761 -0.283 -1.625 1.816 sum 0.172 -0.711 11.054 11.078 Atomic orbital electron populations 1.22241 1.01106 0.98562 1.00067 1.19248 0.89542 0.94406 0.87332 0.95413 1.21454 1.30269 1.12180 0.91395 0.93242 1.25653 0.95546 0.95869 1.01683 1.70014 1.37985 1.24205 1.23729 0.85554 0.78075 0.78661 0.79617 1.19477 1.20652 1.20709 1.65507 1.54149 1.01821 1.02007 1.22945 0.97695 0.91601 0.97000 1.22304 1.02386 0.97649 0.93262 1.22274 1.02662 0.93046 0.96641 1.22775 0.96115 0.95109 0.91053 0.94451 1.22399 0.99404 0.92272 0.96557 1.22861 1.00508 0.94783 0.97506 1.22859 1.02067 0.96686 0.95389 1.22867 1.00231 0.98069 0.96711 0.95472 0.92203 0.95242 0.93116 0.92707 0.95202 0.90881 0.90422 0.90427 0.90303 0.89568 0.90404 0.89488 0.89205 0.91134 0.94051 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.03 8.27 71.98 0.60 -7.44 16 2 C 0.20 10.43 2.07 44.17 0.09 10.52 16 3 H 0.03 1.58 5.44 -2.39 -0.01 1.56 16 4 C -0.51 -29.17 8.11 25.60 0.21 -28.96 16 5 H 0.05 2.84 7.05 -2.91 -0.02 2.82 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.84 11.30 21.45 0.24 -53.60 16 8 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 N -0.51 -22.34 5.10 -836.07 -4.27 -26.61 16 13 C 0.04 1.43 5.57 86.45 0.48 1.91 16 14 C -0.12 -3.48 7.00 31.49 0.22 -3.26 16 15 C -0.11 -3.02 6.48 31.49 0.20 -2.82 16 16 C 0.06 2.05 1.90 45.06 0.09 2.14 16 17 H 0.04 1.44 5.55 -2.39 -0.01 1.42 16 18 C -0.09 -2.81 3.22 -10.27 -0.03 -2.84 16 19 C -0.12 -2.92 7.59 31.18 0.24 -2.69 16 20 C -0.13 -3.46 8.09 31.18 0.25 -3.21 16 21 C -0.14 -5.04 5.57 31.12 0.17 -4.86 16 22 H 0.03 1.22 6.12 -2.39 -0.01 1.21 16 23 H 0.06 3.33 6.01 -2.39 -0.01 3.32 16 24 H 0.03 1.42 5.90 -2.39 -0.01 1.41 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.05 2.32 7.49 -2.38 -0.02 2.30 16 27 H 0.03 1.26 5.54 -2.39 -0.01 1.25 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 1.97 7.86 -2.38 -0.02 1.95 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.63 8.01 -2.39 -0.02 1.61 16 38 H 0.05 2.25 7.46 -2.38 -0.02 2.23 16 Total: -1.00 -61.29 282.27 1.99 -59.31 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.02 Total: 14.38 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.96 Total: -40.46 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -4.02 Total: -80.21 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.29 1.99 -59.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688949036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.835 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds