Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47370 * 2 1 4 4 C 1.50702 * 109.47194 * 239.99634 * 2 1 3 5 5 H 1.08004 * 120.00079 * 240.00119 * 4 2 1 6 6 C 1.37877 * 119.99930 * 60.00096 * 4 2 1 7 7 N 1.31508 * 120.00055 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46946 * 90.00356 * 8 6 4 10 10 H 1.48497 * 109.46991 * 209.99999 * 8 6 4 11 11 H 1.48500 * 109.47151 * 330.00585 * 8 6 4 12 12 N 1.46903 * 109.47087 * 119.99924 * 2 1 3 13 13 C 1.47446 * 110.99980 * 179.15758 * 12 2 1 14 14 C 1.54320 * 107.23146 * 123.25747 * 13 12 2 15 15 C 1.55255 * 103.08830 * 22.20329 * 14 13 12 16 16 C 1.47850 * 110.99786 * 299.99766 * 12 2 1 17 17 H 1.08991 * 110.37283 * 332.57902 * 16 12 2 18 18 C 1.53003 * 110.36974 * 94.80907 * 16 12 2 19 19 C 1.53786 * 113.61158 * 174.32374 * 18 16 12 20 20 C 1.53779 * 87.07844 * 219.93305 * 19 18 16 21 21 C 1.53779 * 87.08517 * 25.43278 * 20 19 18 22 22 H 1.09001 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47683 * 300.00147 * 1 2 3 24 24 H 1.09004 * 109.46790 * 60.00309 * 1 2 3 25 25 H 0.97000 * 120.00576 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.88458 * 242.66110 * 13 12 2 27 27 H 1.09000 * 109.88806 * 3.84912 * 13 12 2 28 28 H 1.09004 * 110.70285 * 140.66658 * 14 13 12 29 29 H 1.08996 * 110.70699 * 263.89867 * 14 13 12 30 30 H 1.09001 * 111.09197 * 206.38814 * 15 14 13 31 31 H 1.08996 * 110.94888 * 82.52658 * 15 14 13 32 32 H 1.09007 * 112.84753 * 305.51831 * 18 16 12 33 33 H 1.09001 * 113.61139 * 105.38795 * 19 18 16 34 34 H 1.09000 * 113.69079 * 334.49403 * 19 18 16 35 35 H 1.08996 * 113.61710 * 139.98316 * 20 19 18 36 36 H 1.09003 * 113.61477 * 270.88420 * 20 19 18 37 37 H 1.08995 * 113.61739 * 89.10986 * 21 20 19 38 38 H 1.08994 * 113.61782 * 220.02244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1405 -5.1120 11 1 3.6308 -1.7569 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 3.4934 -0.7297 1.2235 14 6 3.9459 -0.0713 2.5437 15 6 2.6940 -0.2078 3.4518 16 6 1.5455 -0.0220 2.4290 17 1 1.3727 1.0375 2.2408 18 6 0.2655 -0.6873 2.9387 19 6 -0.2176 -0.1379 4.2914 20 6 -0.5671 -1.5878 4.6663 21 6 0.5083 -2.0249 3.6576 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7095 1.1617 -3.4844 26 1 3.8388 -1.7629 1.1869 27 1 3.8922 -0.1729 0.3756 28 1 4.7932 -0.6075 2.9712 29 1 4.1927 0.9786 2.3860 30 1 2.6720 0.5752 4.2099 31 1 2.6516 -1.1952 3.9112 32 1 -0.5175 -0.7342 2.1816 33 1 -1.0874 0.5143 4.2122 34 1 0.5788 0.2906 4.8997 35 1 -0.3265 -1.8421 5.6985 36 1 -1.5776 -1.8810 4.3816 37 1 1.5042 -2.1126 4.0916 38 1 0.2246 -2.8958 3.0668 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688949041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = 22.912397 kcal Electronic energy + Delta-G solvation = -16358.072119 eV Core-core repulsion = 14007.952520 eV Total energy + Delta-G solvation = -2350.119599 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54149 -36.84909 -33.66653 -31.13577 -29.03399 -27.45855 -25.30586 -25.01701 -24.18246 -21.15386 -20.67480 -19.18505 -18.07326 -16.05247 -15.63577 -15.34364 -14.97482 -14.24587 -13.40708 -13.22100 -12.94931 -12.57271 -12.35066 -12.03318 -11.66599 -11.48362 -11.00760 -10.86429 -10.73741 -10.62418 -10.52372 -10.33976 -10.16959 -9.93417 -9.83234 -9.72099 -9.63959 -9.48075 -8.78587 -8.36867 -7.05703 -5.96523 -4.00630 3.33028 3.39219 3.42786 4.44117 4.82307 5.00022 5.10556 5.16171 5.32352 5.35103 5.35883 5.49730 5.69065 5.87936 5.96284 6.03339 6.10279 6.14667 6.17859 6.26858 6.32685 6.39682 6.47711 6.66006 6.74826 6.79197 6.84747 6.92146 7.00478 7.12779 7.18883 7.58725 7.79864 7.90038 8.27426 8.42483 8.67423 9.07076 9.64277 11.09956 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.008303 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.694291 B = 3371.294567 C = 3738.356319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.209 3.791 3 H -0.004 1.004 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.518 5.518 13 C 0.055 3.945 14 C -0.144 4.144 15 C -0.132 4.132 16 C 0.084 3.916 17 H 0.043 0.957 18 C -0.091 4.091 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.132 4.132 22 H 0.033 0.967 23 H 0.012 0.988 24 H 0.082 0.918 25 H 0.259 0.741 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -1.905 11.949 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.103 3.897 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.243 5.243 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.169 4.169 16 C -0.025 4.025 17 H 0.061 0.939 18 C -0.110 4.110 19 C -0.179 4.179 20 C -0.182 4.182 21 C -0.169 4.169 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.258 -2.289 11.750 11.974 hybrid contribution 0.565 0.466 -0.969 1.214 sum 0.823 -1.823 10.781 10.965 Atomic orbital electron populations 1.21909 0.97922 0.99400 0.99873 1.19392 0.92331 0.91701 0.86273 0.98670 1.21159 1.30715 1.12127 0.89832 0.92090 1.24930 0.95331 0.95090 0.98969 1.69894 1.37168 1.23063 1.23273 0.86548 0.79227 0.79303 0.82613 1.20731 1.21403 1.19974 1.63542 1.06741 1.52090 1.01910 1.22578 0.89584 0.99618 0.95534 1.22852 0.97607 1.00477 0.97361 1.22960 0.94963 1.01635 0.97362 1.22314 0.93520 0.95916 0.90760 0.93865 1.22611 0.97792 0.95425 0.95128 1.22988 1.00608 0.96197 0.98129 1.22814 0.99401 0.97120 0.98859 1.22995 0.98477 0.98101 0.97277 0.94818 0.96943 0.89988 0.93088 0.92299 0.91976 0.91985 0.92367 0.92276 0.90273 0.88360 0.92235 0.90583 0.92331 0.90772 0.89816 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 7.73 37.15 0.29 -3.00 16 2 C 0.21 5.36 1.66 -68.87 -0.11 5.24 16 3 H 0.00 -0.12 8.09 -51.93 -0.42 -0.54 16 4 C -0.50 -13.88 7.66 -34.44 -0.26 -14.14 16 5 H 0.06 1.70 7.40 -52.48 -0.39 1.32 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.52 -11.26 4.70 -216.84 -1.02 -12.28 16 13 C 0.06 1.10 6.03 -2.83 -0.02 1.09 16 14 C -0.14 -2.33 6.94 -24.84 -0.17 -2.50 16 15 C -0.13 -2.02 5.49 -24.53 -0.13 -2.16 16 16 C 0.08 1.54 1.94 -66.18 -0.13 1.41 16 17 H 0.04 0.87 7.61 -51.93 -0.39 0.48 16 18 C -0.09 -1.51 3.31 -89.80 -0.30 -1.80 16 19 C -0.14 -1.92 7.47 -25.92 -0.19 -2.11 16 20 C -0.14 -1.82 8.08 -25.92 -0.21 -2.03 16 21 C -0.13 -1.94 7.40 -25.92 -0.19 -2.13 16 22 H 0.03 0.82 8.00 -51.93 -0.42 0.41 16 23 H 0.01 0.26 5.70 -51.93 -0.30 -0.03 16 24 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.38 7.01 -51.93 -0.36 1.01 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.81 7.76 -51.93 -0.40 0.41 16 31 H 0.08 1.15 5.12 -51.93 -0.27 0.89 16 32 H 0.10 1.83 5.60 -51.93 -0.29 1.54 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.97 7.08 -51.93 -0.37 0.60 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.19 5.21 -51.93 -0.27 0.92 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 281.85 15.07 4.25 4.25 Total: -1.00 -28.28 281.85 -8.98 -37.26 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.29 Total: -0.02 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -1.53 Total: -20.62 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.39 Total: -37.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.28 -8.98 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688949041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.172 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds