Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 N 1.46903 * 109.47120 * 119.99748 * 2 1 3 13 13 C 1.46898 * 111.00159 * 275.00019 * 12 2 1 14 14 C 1.52992 * 109.47334 * 180.02562 * 13 12 2 15 15 C 1.52310 * 115.91576 * 111.39236 * 14 13 12 16 16 C 1.52065 * 115.93213 * 179.67933 * 14 13 12 17 17 H 1.09002 * 117.25561 * 0.63812 * 16 14 13 18 18 C 1.52717 * 120.52533 * 149.25973 * 16 14 13 19 19 C 1.52883 * 110.14919 * 338.53203 * 18 16 14 20 20 C 1.53290 * 108.58391 * 54.52182 * 19 18 16 21 21 C 1.51673 * 108.14788 * 285.45549 * 20 19 18 22 22 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 23 23 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 24 24 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 26 26 H 1.00895 * 110.99825 * 38.95210 * 12 2 1 27 27 H 1.08999 * 109.47038 * 300.00549 * 13 12 2 28 28 H 1.09001 * 109.47109 * 59.99966 * 13 12 2 29 29 H 1.08994 * 117.53413 * 213.90561 * 15 14 13 30 30 H 1.09001 * 117.53744 * 359.07428 * 15 14 13 31 31 H 1.09000 * 109.35718 * 98.74107 * 18 16 14 32 32 H 1.08998 * 109.35681 * 218.32116 * 18 16 14 33 33 H 1.09006 * 109.61187 * 174.25091 * 19 18 16 34 34 H 1.08997 * 109.61730 * 294.78679 * 19 18 16 35 35 H 1.08999 * 109.62023 * 45.28233 * 20 19 18 36 36 H 1.08998 * 109.62388 * 165.64380 * 20 19 18 37 37 H 1.09008 * 109.71650 * 294.54648 * 21 20 19 38 38 H 1.09001 * 108.15043 * 175.48845 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 1.3553 -2.1611 -4.4148 10 1 2.4907 -0.1345 -5.1107 11 1 3.6387 -1.7477 -3.7105 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5327 3.5742 15 6 3.9809 -0.1355 4.0688 16 6 2.7263 0.2831 4.8508 17 1 2.4374 1.3331 4.8039 18 6 2.5362 -0.3759 6.2153 19 6 1.7266 -1.6645 6.0694 20 6 2.4169 -2.5608 5.0351 21 6 2.1506 -1.9843 3.6577 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.4496 -1.4978 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0871 0.6164 2.5525 29 1 4.6056 -0.9178 4.4997 30 1 4.5116 0.6381 3.5138 31 1 3.5113 -0.6083 6.6433 32 1 2.0075 0.3100 6.8772 33 1 1.6828 -2.1797 7.0291 34 1 0.7176 -1.4267 5.7325 35 1 3.4896 -2.5825 5.2274 36 1 2.0133 -3.5713 5.0987 37 1 1.0859 -2.0472 3.4323 38 1 2.7073 -2.5739 2.9293 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693589995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = -14.049285 kcal Electronic energy + Delta-G solvation = -15703.623086 eV Core-core repulsion = 13351.900708 eV Total energy + Delta-G solvation = -2351.722378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87087 -37.58795 -34.80097 -33.87155 -31.90292 -30.02921 -27.27696 -25.95572 -25.52040 -22.67507 -22.15704 -21.50115 -19.03789 -18.42202 -16.93093 -16.56681 -16.00384 -15.44193 -15.11525 -14.77015 -14.74308 -14.37461 -14.17352 -13.72408 -13.45312 -12.95111 -12.93276 -12.81475 -12.66989 -12.32699 -12.18832 -12.15762 -11.87071 -11.76088 -11.57658 -11.18449 -10.98031 -10.52272 -10.49578 -10.31507 -8.92017 -8.09977 -6.21569 1.42944 1.43633 1.55085 2.43954 2.82114 3.18051 3.56854 3.81712 3.89023 3.97557 4.13081 4.23873 4.40073 4.44906 4.58375 4.65755 4.73159 4.75728 4.81634 4.85939 4.90982 4.98486 5.06516 5.10433 5.13556 5.30582 5.32626 5.37205 5.40719 5.45213 5.53245 5.58081 5.67922 5.80887 6.26624 6.65372 6.83690 6.94550 7.48646 8.95767 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049162 B = 0.005811 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.412447 B = 4817.613829 C = 4906.564535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.681 5.681 13 C 0.097 3.903 14 C -0.109 4.109 15 C -0.170 4.170 16 C -0.140 4.140 17 H 0.094 0.906 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.076 4.076 22 H 0.022 0.978 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.261 0.739 26 H 0.332 0.668 27 H 0.047 0.953 28 H 0.014 0.986 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -4.267 16.597 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.015 0.985 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.312 5.312 13 C -0.033 4.033 14 C -0.110 4.110 15 C -0.207 4.207 16 C -0.159 4.159 17 H 0.113 0.887 18 C -0.121 4.121 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.114 4.114 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.687 -4.060 16.292 17.004 hybrid contribution -0.798 0.236 -1.130 1.404 sum 1.888 -3.824 15.161 15.750 Atomic orbital electron populations 1.22231 1.00052 0.99237 0.99935 1.18948 0.90016 0.92593 0.87925 0.98519 1.21447 1.30405 1.12447 0.91026 0.92718 1.25758 0.95465 0.95869 1.01992 1.70019 1.38181 1.24263 1.24000 0.85477 0.78806 0.78185 0.78652 1.19931 1.20946 1.19543 1.60676 1.57770 1.09486 1.03223 1.21491 0.97443 0.94595 0.89728 1.20966 1.00658 0.96136 0.93192 1.23215 0.90376 1.03200 1.03899 1.22399 1.01824 0.99121 0.92576 0.88731 1.21063 1.00931 0.96707 0.93401 1.21581 0.98819 0.95761 0.99362 1.21394 1.01068 0.99090 0.93764 1.20453 1.00276 0.92378 0.98259 0.95936 0.91906 0.94835 0.92995 0.84951 0.93405 0.96805 0.87839 0.90072 0.90775 0.90732 0.90281 0.92617 0.91552 0.90786 0.92593 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.94 71.98 0.64 -7.10 16 2 C 0.21 11.28 2.57 44.17 0.11 11.39 16 3 H 0.00 -0.19 7.80 -2.39 -0.02 -0.20 16 4 C -0.51 -29.45 8.84 25.60 0.23 -29.22 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.46 11.32 21.45 0.24 -54.22 16 8 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.68 -30.05 5.98 -495.47 -2.96 -33.01 16 13 C 0.10 3.68 5.53 86.30 0.48 4.16 16 14 C -0.11 -3.24 2.45 -53.03 -0.13 -3.37 16 15 C -0.17 -4.53 9.24 30.58 0.28 -4.25 16 16 C -0.14 -3.43 5.83 -10.98 -0.06 -3.50 16 17 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 18 C -0.08 -1.56 5.83 30.46 0.18 -1.38 16 19 C -0.12 -2.16 5.92 30.65 0.18 -1.98 16 20 C -0.12 -2.37 5.70 30.26 0.17 -2.20 16 21 C -0.08 -2.06 4.01 29.85 0.12 -1.95 16 22 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 23 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 24 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.33 13.78 6.80 -89.70 -0.61 13.17 16 27 H 0.05 1.93 7.68 -2.39 -0.02 1.91 16 28 H 0.01 0.54 7.44 -2.39 -0.02 0.52 16 29 H 0.10 2.45 7.26 -2.39 -0.02 2.43 16 30 H 0.08 2.31 7.94 -2.39 -0.02 2.29 16 31 H 0.07 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.12 8.03 -2.39 -0.02 1.11 16 35 H 0.07 1.31 7.11 -2.39 -0.02 1.29 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.57 7.74 -2.38 -0.02 1.55 16 38 H 0.06 1.76 7.99 -2.39 -0.02 1.74 16 Total: -1.00 -60.85 292.49 2.36 -58.49 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.40 Total: 20.49 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 2.65 Total: -38.55 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.72 Total: -87.23 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -60.85 2.36 -58.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693589995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.440 kcal (2) G-P(sol) polarization free energy of solvation -60.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds