Wall clock time and date at job start Mon Mar 30 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46901 * 110.99540 * 176.04541 * 12 2 1 14 14 C 1.46895 * 111.00014 * 299.99855 * 12 2 1 15 15 C 1.53009 * 109.47118 * 170.00092 * 14 12 2 16 16 C 1.52997 * 119.29648 * 109.05007 * 15 14 12 17 17 C 1.53875 * 121.33085 * 180.88393 * 15 14 12 18 18 H 1.09001 * 121.33085 * 0.56716 * 17 15 14 19 19 C 1.54264 * 106.59516 * 138.06175 * 17 15 14 20 20 C 1.54886 * 104.19971 * 336.38982 * 19 17 15 21 21 C 1.54261 * 117.41161 * 314.70974 * 15 14 12 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47220 * 60.00355 * 13 12 2 27 27 H 1.09003 * 109.46694 * 180.02562 * 13 12 2 28 28 H 1.08998 * 109.47259 * 299.99701 * 13 12 2 29 29 H 1.09000 * 109.47501 * 290.00119 * 14 12 2 30 30 H 1.08998 * 109.47177 * 50.00407 * 14 12 2 31 31 H 1.09001 * 117.46054 * 218.90385 * 16 15 14 32 32 H 1.09004 * 117.45972 * 3.70946 * 16 15 14 33 33 H 1.09000 * 110.48353 * 217.71148 * 19 17 15 34 34 H 1.09001 * 110.48253 * 95.06977 * 19 17 15 35 35 H 1.09003 * 110.75605 * 279.62554 * 20 19 17 36 36 H 1.09002 * 110.91418 * 156.32690 * 20 19 17 37 37 H 1.09004 * 110.48952 * 2.30562 * 21 15 14 38 38 H 1.08993 * 110.48832 * 124.81925 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1872 14 6 1.5486 -0.0262 2.4211 15 6 1.8625 -0.9041 3.6343 16 6 2.9557 -0.4675 4.6116 17 6 1.4664 -0.4735 5.0575 18 1 0.9428 0.4648 5.2406 19 6 0.9190 -1.7319 5.7622 20 6 0.4546 -2.6459 4.6012 21 6 1.5421 -2.4090 3.5239 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7173 1.1669 -3.4844 26 1 3.9186 0.2051 1.1592 27 1 3.8208 -1.3116 2.0861 28 1 3.8029 -1.3532 0.3069 29 1 2.0518 0.9347 2.5280 30 1 0.4722 0.1326 2.3563 31 1 3.6031 -1.2431 5.0209 32 1 3.4322 0.4968 4.4346 33 1 0.0770 -1.4735 6.4045 34 1 1.7053 -2.2182 6.3395 35 1 -0.5250 -2.3381 4.2354 36 1 0.4389 -3.6908 4.9110 37 1 1.1548 -2.6450 2.5327 38 1 2.4295 -3.0047 3.7374 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693823752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:26 Heat of formation + Delta-G solvation = 10.297685 kcal Electronic energy + Delta-G solvation = -16005.906206 eV Core-core repulsion = 13655.239592 eV Total energy + Delta-G solvation = -2350.666614 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65592 -38.18891 -34.76130 -32.53795 -31.13164 -29.63460 -28.07729 -26.54355 -24.79494 -23.31792 -21.67567 -20.87501 -19.39380 -18.32873 -17.12310 -16.43929 -16.09056 -15.80176 -15.23018 -14.86497 -14.37264 -13.98254 -13.85979 -13.70309 -13.48648 -12.94267 -12.85636 -12.61927 -12.57829 -12.12026 -12.02304 -11.96309 -11.85254 -11.76973 -11.70835 -11.45239 -10.94476 -10.64561 -10.52833 -10.18376 -8.89771 -8.11021 -6.23069 1.42277 1.44362 1.51839 2.42085 2.70895 3.17006 3.35524 3.72770 3.93374 3.98201 4.13481 4.33210 4.52795 4.58399 4.62227 4.69469 4.74220 4.80336 4.86462 4.91800 4.94279 5.02082 5.06819 5.09931 5.12210 5.22761 5.27169 5.37688 5.41337 5.50141 5.51866 5.63206 5.73091 5.80020 6.25752 6.42494 6.77146 6.92321 7.46262 8.95083 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047284 B = 0.006629 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.026755 B = 4223.044003 C = 4272.886528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.043 1.043 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.532 5.532 13 C 0.049 3.951 14 C 0.096 3.904 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.160 4.160 18 H 0.107 0.893 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.079 4.079 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.027 0.973 25 H 0.261 0.739 26 H -0.002 1.002 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.010 0.990 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -4.698 14.528 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.026 1.026 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.256 5.256 13 C -0.100 4.100 14 C -0.032 4.032 15 C -0.135 4.135 16 C -0.181 4.181 17 C -0.179 4.179 18 H 0.125 0.875 19 C -0.123 4.123 20 C -0.158 4.158 21 C -0.117 4.117 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.084 -5.062 14.368 15.272 hybrid contribution 0.517 0.987 -1.284 1.700 sum 1.601 -4.075 13.084 13.797 Atomic orbital electron populations 1.21646 0.97374 0.99179 0.99478 1.19053 0.92617 0.89952 0.87566 1.02589 1.21406 1.31169 1.12226 0.90901 0.92144 1.25741 0.95399 0.95758 1.01989 1.70020 1.37903 1.24224 1.24098 0.85565 0.78707 0.78690 0.78385 1.19602 1.20967 1.19667 1.62010 1.10062 1.51939 1.01565 1.22105 0.87969 0.98320 1.01562 1.21474 0.99417 0.93158 0.89173 1.22328 1.05061 0.96250 0.89865 1.23566 0.90777 1.02451 1.01340 1.23849 0.97223 1.00139 0.96707 0.87493 1.21922 1.00560 0.93053 0.96791 1.22676 0.98148 1.00040 0.94945 1.21763 0.98493 0.92048 0.99392 0.92234 0.94961 0.95398 0.92952 0.98328 0.90776 0.92555 0.97188 0.91756 0.87911 0.89105 0.90228 0.90500 0.92322 0.90154 0.92330 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.77 71.98 0.63 -5.39 16 2 C 0.22 11.35 2.06 44.17 0.09 11.45 16 3 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 4 C -0.52 -29.16 7.92 25.60 0.20 -28.96 16 5 H 0.06 3.36 6.39 -2.91 -0.02 3.34 16 6 C 0.01 0.53 5.31 84.65 0.45 0.98 16 7 N -0.92 -54.21 11.33 21.45 0.24 -53.97 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.53 -23.43 3.80 -901.45 -3.43 -26.86 16 13 C 0.05 1.99 9.08 127.69 1.16 3.15 16 14 C 0.10 3.63 5.04 86.31 0.44 4.06 16 15 C -0.13 -3.99 1.32 -51.46 -0.07 -4.06 16 16 C -0.14 -3.56 9.71 31.44 0.31 -3.26 16 17 C -0.16 -3.84 6.92 -9.22 -0.06 -3.91 16 18 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 19 C -0.09 -1.70 6.64 31.67 0.21 -1.49 16 20 C -0.12 -2.74 6.91 31.89 0.22 -2.52 16 21 C -0.08 -2.26 6.20 31.67 0.20 -2.06 16 22 H 0.06 3.31 6.08 -2.38 -0.01 3.30 16 23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.03 1.25 6.20 -2.39 -0.01 1.24 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.07 2.56 6.96 -2.39 -0.02 2.54 16 28 H 0.06 2.44 6.23 -2.39 -0.01 2.42 16 29 H 0.01 0.39 8.02 -2.39 -0.02 0.37 16 30 H 0.06 2.53 5.83 -2.39 -0.01 2.52 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 2.02 7.48 -2.38 -0.02 2.01 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -60.49 292.93 3.62 -56.87 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.01 Total: 9.66 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.77 Total: -32.00 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -3.19 Total: -80.83 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.49 3.62 -56.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693823752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.172 kcal (2) G-P(sol) polarization free energy of solvation -60.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds