Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46924 * 2 1 4 4 C 1.50699 * 109.46892 * 240.00342 * 2 1 3 5 5 H 1.08008 * 119.99468 * 271.63215 * 4 2 1 6 6 C 1.37875 * 120.00227 * 91.62739 * 4 2 1 7 7 N 1.31514 * 119.99955 * 2.68170 * 6 4 2 8 8 Si 1.86798 * 120.00151 * 182.67100 * 6 4 2 9 9 H 1.48495 * 109.47185 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47421 * 300.00831 * 8 6 4 11 11 H 1.48503 * 109.46860 * 60.00767 * 8 6 4 12 12 N 1.46898 * 109.47311 * 120.00413 * 2 1 3 13 13 C 1.46891 * 111.00184 * 165.91696 * 12 2 1 14 14 C 1.46901 * 110.99671 * 289.87187 * 12 2 1 15 15 C 1.53001 * 109.47359 * 78.60336 * 14 12 2 16 16 C 1.53005 * 119.29799 * 246.21184 * 15 14 12 17 17 C 1.53004 * 60.37740 * 248.69207 * 16 15 14 18 18 H 1.08994 * 119.75406 * 111.12044 * 17 16 15 19 19 C 1.54274 * 118.19589 * 266.38445 * 17 16 15 20 20 C 1.54891 * 104.19389 * 87.79162 * 19 17 16 21 21 C 1.54266 * 117.41456 * 41.86357 * 15 14 12 22 22 H 1.08999 * 109.47010 * 316.96877 * 1 2 3 23 23 H 1.08997 * 109.47186 * 76.96968 * 1 2 3 24 24 H 1.09004 * 109.46670 * 196.97359 * 1 2 3 25 25 H 0.96997 * 120.00052 * 354.60478 * 7 6 4 26 26 H 1.09006 * 109.46918 * 63.38990 * 13 12 2 27 27 H 1.09003 * 109.47469 * 183.38613 * 13 12 2 28 28 H 1.08995 * 109.47411 * 303.38985 * 13 12 2 29 29 H 1.09001 * 109.47230 * 198.59910 * 14 12 2 30 30 H 1.08999 * 109.47470 * 318.60311 * 14 12 2 31 31 H 1.08996 * 117.46033 * 356.28840 * 16 15 14 32 32 H 1.09002 * 117.46140 * 141.09252 * 16 15 14 33 33 H 1.08994 * 110.48194 * 206.46425 * 19 17 16 34 34 H 1.08998 * 110.48272 * 329.11013 * 19 17 16 35 35 H 1.08991 * 110.76252 * 80.37440 * 20 19 17 36 36 H 1.09008 * 110.75243 * 203.55964 * 20 19 17 37 37 H 1.09001 * 110.49132 * 235.05477 * 21 15 14 38 38 H 1.09007 * 110.48729 * 357.69210 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1872 -1.7791 -1.2116 6 6 2.2941 0.0040 -2.3804 7 7 2.1560 1.3118 -2.3878 8 14 2.8452 -0.8857 -3.9276 9 1 3.0602 0.1012 -5.0161 10 1 4.1139 -1.6087 -3.6577 11 1 1.7998 -1.8570 -4.3390 12 7 2.0198 -0.6926 1.1994 13 6 3.4493 -1.0080 1.0783 14 6 1.7557 0.0985 2.4087 15 6 0.2888 -0.0619 2.8129 16 6 -0.6452 1.1476 2.7374 17 6 -0.2599 0.5737 4.1024 18 1 0.3830 1.1485 4.7689 19 6 -1.1962 -0.4707 4.7446 20 6 -0.6997 -1.8245 4.1792 21 6 -0.3219 -1.4757 2.7241 22 1 -0.3633 0.7512 0.7013 23 1 -0.3633 0.2317 -1.0012 24 1 -0.3633 -0.9830 0.3000 25 1 1.7957 1.7659 -1.6100 26 1 4.0213 -0.0824 1.0124 27 1 3.7721 -1.5730 1.9528 28 1 3.6155 -1.6025 0.1800 29 1 2.3960 -0.2511 3.2186 30 1 1.9645 1.1494 2.2082 31 1 -0.2070 2.1041 2.4524 32 1 -1.6635 0.9753 2.3889 33 1 -1.1003 -0.4525 5.8301 34 1 -2.2296 -0.2896 4.4488 35 1 0.1780 -2.1722 4.7240 36 1 -1.4933 -2.5711 4.2115 37 1 -1.2185 -1.4658 2.1043 38 1 0.4081 -2.1825 2.3292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693823754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = 7.707114 kcal Electronic energy + Delta-G solvation = -16331.322915 eV Core-core repulsion = 13980.543965 eV Total energy + Delta-G solvation = -2350.778950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93737 -38.25119 -34.84330 -32.67224 -31.32102 -29.90399 -27.54889 -26.44552 -24.72307 -23.40086 -22.23816 -20.82539 -19.51645 -18.65170 -17.10096 -16.31547 -15.95121 -15.65263 -15.38581 -15.32666 -14.20780 -13.96946 -13.91840 -13.73804 -13.39219 -13.23253 -12.85119 -12.74433 -12.39722 -12.20942 -12.00129 -11.99458 -11.92358 -11.77306 -11.56620 -11.48224 -10.74656 -10.57050 -10.53551 -10.08344 -9.03391 -8.57818 -6.29515 1.52394 1.60121 1.79010 2.56618 2.68930 3.15333 3.32825 3.67888 3.93102 3.96090 4.12356 4.29468 4.48854 4.50497 4.53256 4.62040 4.67442 4.73672 4.79250 4.85198 4.87759 4.94727 5.00864 5.04685 5.07412 5.18562 5.22304 5.30712 5.36683 5.38319 5.51256 5.59040 5.63315 5.97822 6.02805 6.48325 6.54457 6.78462 7.50850 8.78046 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045517 B = 0.007493 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.008212 B = 3735.927768 C = 3836.190454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.198 3.802 3 H -0.034 1.034 4 C -0.588 4.588 5 H 0.050 0.950 6 C -0.033 4.033 7 N -0.943 5.943 8 Si 1.112 2.888 9 H -0.287 1.287 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.531 5.531 13 C 0.047 3.953 14 C 0.097 3.903 15 C -0.125 4.125 16 C -0.157 4.157 17 C -0.152 4.152 18 H 0.112 0.888 19 C -0.087 4.087 20 C -0.117 4.117 21 C -0.076 4.076 22 H 0.054 0.946 23 H 0.011 0.989 24 H 0.055 0.945 25 H 0.254 0.746 26 H -0.007 1.007 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.006 0.994 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -4.411 13.224 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.091 3.909 3 H -0.016 1.016 4 C -0.627 4.627 5 H 0.068 0.932 6 C -0.230 4.230 7 N -0.581 5.581 8 Si 0.935 3.065 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.196 1.196 12 N -0.255 5.255 13 C -0.101 4.101 14 C -0.031 4.031 15 C -0.125 4.125 16 C -0.194 4.194 17 C -0.171 4.171 18 H 0.130 0.870 19 C -0.125 4.125 20 C -0.155 4.155 21 C -0.113 4.113 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.012 0.988 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.369 -4.634 11.726 13.343 hybrid contribution 0.129 1.094 1.066 1.532 sum -4.240 -3.540 12.791 13.933 Atomic orbital electron populations 1.21973 0.96904 1.00820 0.97985 1.19319 0.92908 0.90442 0.88228 1.01635 1.22182 1.47270 0.95629 0.97582 0.93183 1.27193 0.94997 0.95933 1.04872 1.70920 1.44822 1.09297 1.33098 0.82990 0.77153 0.74283 0.72112 1.21296 1.19586 1.19636 1.62052 1.15974 1.45038 1.02404 1.22120 0.87795 0.98374 1.01851 1.21470 0.94942 0.93916 0.92790 1.22246 0.93873 0.93773 1.02658 1.23118 0.99907 0.96669 0.99687 1.23553 1.02475 1.01495 0.89552 0.86977 1.21948 0.97918 0.92354 1.00258 1.22581 1.00963 0.97321 0.94621 1.21682 0.98989 0.93739 0.96937 0.92753 0.96936 0.92623 0.93565 0.98832 0.90777 0.91927 0.90529 0.97589 0.90016 0.88940 0.89638 0.91213 0.91377 0.90296 0.93067 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 7.93 71.98 0.57 -5.03 16 2 C 0.20 10.21 1.98 44.17 0.09 10.29 16 3 H -0.03 -1.99 6.10 -2.39 -0.01 -2.00 16 4 C -0.59 -33.10 6.69 25.60 0.17 -32.92 16 5 H 0.05 2.82 7.21 -2.91 -0.02 2.80 16 6 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 7 N -0.94 -58.64 13.61 21.45 0.29 -58.35 16 8 Si 1.11 50.86 29.90 68.60 2.05 52.92 16 9 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 N -0.53 -23.14 3.65 -901.48 -3.29 -26.42 16 13 C 0.05 1.96 9.07 127.69 1.16 3.12 16 14 C 0.10 3.59 5.31 86.30 0.46 4.05 16 15 C -0.12 -3.95 1.01 -51.45 -0.05 -4.01 16 16 C -0.16 -4.69 7.22 30.60 0.22 -4.47 16 17 C -0.15 -3.83 6.82 -10.06 -0.07 -3.90 16 18 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 19 C -0.09 -1.79 6.63 31.67 0.21 -1.58 16 20 C -0.12 -2.62 6.88 31.69 0.22 -2.40 16 21 C -0.08 -2.28 4.80 31.47 0.15 -2.13 16 22 H 0.05 2.29 4.43 -2.39 -0.01 2.28 16 23 H 0.01 0.60 8.02 -2.39 -0.02 0.59 16 24 H 0.05 2.48 6.13 -2.39 -0.01 2.47 16 25 H 0.25 16.12 6.56 -92.71 -0.61 15.52 16 26 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 27 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 28 H 0.06 2.85 6.25 -2.39 -0.01 2.83 16 29 H 0.08 2.52 7.83 -2.39 -0.02 2.50 16 30 H 0.01 0.24 7.63 -2.39 -0.02 0.22 16 31 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 32 H 0.09 2.66 8.11 -2.39 -0.02 2.64 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.05 1.59 7.41 -2.39 -0.02 1.58 16 38 H 0.06 2.24 7.35 -2.38 -0.02 2.23 16 Total: -1.00 -63.58 286.35 3.81 -59.77 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.17 Total: 12.48 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.59 Total: -40.38 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.00 Total: -84.77 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.92 kcal Total: -63.58 3.81 -59.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693823754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.474 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds