Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 H 1.09004 * 109.35338 * 54.99949 * 14 13 12 16 16 C 1.52870 * 109.35819 * 295.28318 * 14 13 12 17 17 C 1.56451 * 106.96871 * 183.41796 * 16 14 13 18 18 C 1.52874 * 107.74266 * 75.99463 * 17 16 14 19 19 C 1.52080 * 110.51153 * 304.46412 * 18 17 16 20 20 H 1.08995 * 114.26613 * 166.23511 * 19 18 17 21 21 C 1.49171 * 119.09151 * 309.92465 * 19 18 17 22 22 C 1.52068 * 120.01648 * 21.70275 * 19 18 17 23 23 H 1.09005 * 117.25122 * 144.43698 * 22 19 18 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 29 29 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 30 30 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 31 31 H 1.09001 * 109.62002 * 304.99545 * 16 14 13 32 32 H 1.09000 * 109.62269 * 65.53714 * 16 14 13 33 33 H 1.08991 * 110.56778 * 316.21667 * 17 16 14 34 34 H 1.09003 * 109.65276 * 195.23556 * 17 16 14 35 35 H 1.09000 * 109.26733 * 184.20057 * 18 17 16 36 36 H 1.09000 * 109.24167 * 64.71081 * 18 17 16 37 37 H 1.09003 * 117.01795 * 2.53718 * 21 19 18 38 38 H 1.09001 * 117.71988 * 217.91964 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 1 3.5505 -1.0010 3.3378 16 6 1.5847 -1.6124 3.9635 17 6 2.1185 -2.2880 5.2697 18 6 1.8491 -1.3323 6.4321 19 6 2.4694 0.0289 6.1576 20 1 2.1229 0.8211 6.8212 21 6 3.8971 0.1027 5.7316 22 6 2.7842 0.4475 4.7300 23 1 2.6500 1.4993 4.4771 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 1.4496 -1.4978 1.4101 29 1 2.7588 1.0463 2.1182 30 1 1.0870 0.6164 2.5525 31 1 0.6040 -1.1599 4.1103 32 1 1.5299 -2.3634 3.1754 33 1 3.1890 -2.4779 5.1927 34 1 1.5914 -3.2270 5.4385 35 1 2.2784 -1.7458 7.3447 36 1 0.7728 -1.2176 6.5608 37 1 4.4226 -0.8425 5.5953 38 1 4.4997 0.9246 6.1181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694679773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = 0.906597 kcal Electronic energy + Delta-G solvation = -15576.300093 eV Core-core repulsion = 13225.226250 eV Total energy + Delta-G solvation = -2351.073842 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70765 -36.07679 -33.29788 -32.41056 -30.94976 -27.80695 -25.36060 -25.00027 -22.85539 -21.94597 -20.55631 -19.99399 -18.33860 -16.46403 -15.81750 -14.76154 -14.72574 -14.25667 -13.90031 -13.52102 -13.12373 -12.93006 -12.77905 -12.15441 -11.78991 -11.52900 -11.23206 -11.20277 -10.94559 -10.88449 -10.72439 -10.59327 -10.36011 -10.10918 -10.00400 -9.94632 -9.58278 -9.38423 -8.92389 -8.31262 -7.13894 -5.93659 -3.96769 3.37550 3.41086 3.44755 3.86819 4.47317 4.65078 4.78843 4.89173 5.04417 5.24070 5.32001 5.37583 5.47116 5.52906 5.64320 5.68628 5.77904 5.83218 5.93221 6.01332 6.12248 6.20697 6.25861 6.33688 6.37912 6.48969 6.62919 6.74369 6.75577 6.89832 7.16407 7.44900 7.79044 7.94121 8.34286 8.62410 8.69862 9.10402 9.68392 11.13384 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052074 B = 0.005404 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.568379 B = 5180.561885 C = 5217.423651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.067 3.933 14 C -0.054 4.054 15 H 0.079 0.921 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.089 4.089 19 C -0.142 4.142 20 H 0.092 0.908 21 C -0.183 4.183 22 C -0.138 4.138 23 H 0.102 0.898 24 H 0.004 0.996 25 H 0.088 0.912 26 H 0.026 0.974 27 H 0.259 0.741 28 H 0.324 0.676 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -2.613 15.820 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.063 4.063 14 C -0.073 4.073 15 H 0.097 0.903 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.126 4.126 19 C -0.160 4.160 20 H 0.110 0.890 21 C -0.220 4.220 22 C -0.157 4.157 23 H 0.120 0.880 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.104 -2.404 15.497 15.823 hybrid contribution -0.684 -0.143 -0.615 0.931 sum 1.419 -2.547 14.882 15.165 Atomic orbital electron populations 1.22421 1.00832 0.99080 1.00401 1.19156 0.89514 0.94392 0.86654 0.95023 1.21146 1.30096 1.12378 0.89686 0.92050 1.24959 0.95384 0.95232 0.99019 1.69881 1.37379 1.23261 1.23350 0.86569 0.79170 0.79586 0.82079 1.21496 1.20315 1.20408 1.60823 1.58004 1.09148 1.03528 1.21943 0.98182 0.95715 0.90453 1.20703 0.99584 0.94543 0.92456 0.90321 1.22186 0.98403 0.97825 0.96751 1.22157 1.01060 0.97653 0.95014 1.20865 1.00261 0.93359 0.98103 1.21297 0.98403 0.98780 0.97521 0.88977 1.22602 0.91689 1.02895 1.04788 1.22260 1.03418 1.00003 0.90014 0.88021 0.97678 0.89347 0.95447 0.93084 0.85928 0.91936 0.96497 0.91779 0.91422 0.91760 0.92172 0.92158 0.91819 0.88885 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 2 C 0.21 5.42 2.57 -68.87 -0.18 5.24 16 3 H 0.03 0.90 7.80 -51.92 -0.40 0.49 16 4 C -0.49 -13.95 8.84 -34.44 -0.30 -14.26 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.14 11.32 55.43 0.63 -25.51 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.68 -14.81 6.23 -107.95 -0.67 -15.49 16 13 C 0.07 1.23 4.80 -3.82 -0.02 1.21 16 14 C -0.05 -0.80 2.28 -90.84 -0.21 -1.01 16 15 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 16 C -0.11 -1.54 4.97 -24.94 -0.12 -1.67 16 17 C -0.12 -1.37 5.81 -24.94 -0.14 -1.51 16 18 C -0.09 -0.92 5.92 -27.26 -0.16 -1.08 16 19 C -0.14 -1.59 5.91 -93.45 -0.55 -2.14 16 20 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.18 -2.07 9.48 -28.28 -0.27 -2.34 16 22 C -0.14 -1.80 5.72 -90.91 -0.52 -2.32 16 23 H 0.10 1.34 7.92 -51.93 -0.41 0.93 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.32 6.63 6.83 -39.30 -0.27 6.36 16 29 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 30 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 31 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 0.96 6.93 -51.93 -0.36 0.60 16 33 H 0.06 0.73 7.00 -51.93 -0.36 0.37 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.05 7.11 -51.93 -0.37 0.68 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 292.67 15.07 4.41 4.41 Total: -1.00 -28.44 292.67 -9.50 -37.94 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.60 Total: 4.11 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.24 Total: -22.24 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.05 Total: -40.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.44 -9.50 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694679773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.846 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds