Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 H 1.09004 * 109.35338 * 54.99949 * 14 13 12 16 16 C 1.52870 * 109.35819 * 295.28318 * 14 13 12 17 17 C 1.56451 * 106.96871 * 183.41796 * 16 14 13 18 18 C 1.52874 * 107.74266 * 75.99463 * 17 16 14 19 19 C 1.52080 * 110.51153 * 304.46412 * 18 17 16 20 20 H 1.08995 * 114.26613 * 166.23511 * 19 18 17 21 21 C 1.49171 * 119.09151 * 309.92465 * 19 18 17 22 22 C 1.52068 * 120.01648 * 21.70275 * 19 18 17 23 23 H 1.09005 * 117.25122 * 144.43698 * 22 19 18 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 29 29 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 30 30 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 31 31 H 1.09001 * 109.62002 * 304.99545 * 16 14 13 32 32 H 1.09000 * 109.62269 * 65.53714 * 16 14 13 33 33 H 1.08991 * 110.56778 * 316.21667 * 17 16 14 34 34 H 1.09003 * 109.65276 * 195.23556 * 17 16 14 35 35 H 1.09000 * 109.26733 * 184.20057 * 18 17 16 36 36 H 1.09000 * 109.24167 * 64.71081 * 18 17 16 37 37 H 1.09003 * 117.01795 * 2.53718 * 21 19 18 38 38 H 1.09001 * 117.71988 * 217.91964 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 1 3.5505 -1.0010 3.3378 16 6 1.5847 -1.6124 3.9635 17 6 2.1185 -2.2880 5.2697 18 6 1.8491 -1.3323 6.4321 19 6 2.4694 0.0289 6.1576 20 1 2.1229 0.8211 6.8212 21 6 3.8971 0.1027 5.7316 22 6 2.7842 0.4475 4.7300 23 1 2.6500 1.4993 4.4771 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 1.4496 -1.4978 1.4101 29 1 2.7588 1.0463 2.1182 30 1 1.0870 0.6164 2.5525 31 1 0.6040 -1.1599 4.1103 32 1 1.5299 -2.3634 3.1754 33 1 3.1890 -2.4779 5.1927 34 1 1.5914 -3.2270 5.4385 35 1 2.2784 -1.7458 7.3447 36 1 0.7728 -1.2176 6.5608 37 1 4.4226 -0.8425 5.5953 38 1 4.4997 0.9246 6.1181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694679773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -14.927008 kcal Electronic energy + Delta-G solvation = -15576.986689 eV Core-core repulsion = 13225.226250 eV Total energy + Delta-G solvation = -2351.760439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72952 -37.83456 -35.00020 -33.60995 -32.50492 -29.47714 -27.26027 -26.50651 -23.87579 -23.28102 -21.90618 -21.64026 -19.30853 -18.41554 -17.06923 -16.64757 -16.30947 -15.45620 -15.03291 -14.98103 -14.58928 -14.33231 -14.03314 -13.67437 -13.43172 -13.08765 -12.87752 -12.77172 -12.47256 -12.25156 -12.19321 -12.06505 -11.89599 -11.87116 -11.54607 -11.08513 -11.07362 -10.61999 -10.48239 -10.37980 -8.94688 -8.09210 -6.20952 1.43627 1.45815 1.53604 2.44692 2.93778 3.18700 3.50718 3.80664 3.90588 3.95006 4.13971 4.31454 4.34693 4.46556 4.51571 4.61753 4.69622 4.72692 4.76557 4.87607 4.93890 4.96199 5.05815 5.12656 5.13420 5.24744 5.30132 5.38010 5.42363 5.43481 5.49443 5.57174 5.68724 5.82149 6.27500 6.66129 6.85017 6.95361 7.49210 8.96318 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052074 B = 0.005404 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.568379 B = 5180.561885 C = 5217.423651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.270 1.270 12 N -0.687 5.687 13 C 0.071 3.929 14 C -0.042 4.042 15 H 0.067 0.933 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.089 4.089 19 C -0.131 4.131 20 H 0.105 0.895 21 C -0.174 4.174 22 C -0.162 4.162 23 H 0.095 0.905 24 H 0.022 0.978 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.046 0.954 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -3.654 17.130 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.105 3.895 3 H 0.015 0.985 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.195 1.195 12 N -0.317 5.317 13 C -0.059 4.059 14 C -0.061 4.061 15 H 0.085 0.915 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.126 4.126 19 C -0.149 4.149 20 H 0.123 0.877 21 C -0.211 4.211 22 C -0.181 4.181 23 H 0.113 0.887 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.344 -3.452 16.830 17.339 hybrid contribution -0.750 0.218 -0.994 1.265 sum 1.594 -3.234 15.836 16.241 Atomic orbital electron populations 1.22221 1.00019 0.99213 0.99934 1.18938 0.90052 0.92586 0.87882 0.98485 1.21439 1.30516 1.12526 0.91095 0.92705 1.25758 0.95427 0.95889 1.01987 1.70013 1.38026 1.24322 1.24058 0.85535 0.78611 0.78686 0.78298 1.20918 1.19927 1.19524 1.60695 1.57807 1.09687 1.03549 1.21962 0.97819 0.95267 0.90823 1.20535 0.99104 0.94910 0.91540 0.91498 1.22167 0.97899 0.97152 0.97944 1.22123 1.01073 0.98283 0.93872 1.20909 1.00748 0.92571 0.98352 1.21416 0.98135 0.99627 0.95692 0.87717 1.22660 0.91895 1.03324 1.03240 1.22138 1.06293 0.99153 0.90498 0.88677 0.95877 0.91960 0.94861 0.92990 0.85051 0.93533 0.96758 0.92048 0.92518 0.91790 0.90781 0.90241 0.91256 0.88731 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.69 8.94 71.98 0.64 -7.05 16 2 C 0.21 11.28 2.57 44.17 0.11 11.40 16 3 H 0.00 -0.17 7.80 -2.38 -0.02 -0.18 16 4 C -0.52 -29.59 8.84 25.60 0.23 -29.37 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -54.44 11.32 21.45 0.24 -54.20 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.69 -30.17 6.23 -495.44 -3.09 -33.26 16 13 C 0.07 2.65 4.80 86.30 0.41 3.06 16 14 C -0.04 -1.24 2.28 -10.93 -0.02 -1.26 16 15 H 0.07 2.11 8.06 -2.38 -0.02 2.09 16 16 C -0.11 -2.96 4.97 31.75 0.16 -2.80 16 17 C -0.12 -2.34 5.81 31.75 0.18 -2.15 16 18 C -0.09 -1.57 5.92 30.25 0.18 -1.39 16 19 C -0.13 -2.59 5.91 -12.62 -0.07 -2.66 16 20 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.17 -3.57 9.48 29.59 0.28 -3.29 16 22 C -0.16 -4.04 5.72 -10.98 -0.06 -4.10 16 23 H 0.10 2.48 7.92 -2.38 -0.02 2.46 16 24 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 25 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 26 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.33 13.63 6.83 -89.70 -0.61 13.02 16 29 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 30 H 0.01 0.54 7.44 -2.39 -0.02 0.52 16 31 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.06 1.57 6.93 -2.39 -0.02 1.56 16 33 H 0.06 1.30 7.00 -2.39 -0.02 1.29 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.92 7.11 -2.39 -0.02 1.90 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -60.62 292.67 2.07 -58.55 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.40 Total: 20.91 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 2.49 Total: -38.74 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.84 Total: -87.45 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.62 2.07 -58.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694679773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.625 kcal (2) G-P(sol) polarization free energy of solvation -60.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds