Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46895 * 111.00258 * 2 1 4 4 C 1.50702 * 109.46770 * 66.04640 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.46903 * 111.00134 * 236.04665 * 2 1 3 13 13 C 1.53002 * 109.47459 * 293.95705 * 12 2 1 14 14 H 1.08997 * 109.35176 * 54.71487 * 13 12 2 15 15 C 1.52876 * 109.35216 * 294.99651 * 13 12 2 16 16 C 1.53309 * 108.57753 * 185.26665 * 15 13 12 17 17 C 1.52874 * 108.58605 * 74.44486 * 16 15 13 18 18 C 1.52069 * 110.51491 * 305.10543 * 17 16 15 19 19 H 1.08999 * 114.63502 * 165.62788 * 18 17 16 20 20 C 1.52307 * 119.84066 * 310.45212 * 18 17 16 21 21 C 1.52068 * 120.01905 * 21.70602 * 18 17 16 22 22 H 1.09008 * 117.25327 * 144.43606 * 21 18 17 23 23 H 1.08994 * 109.47470 * 59.99796 * 1 2 3 24 24 H 1.09011 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46850 * 299.99524 * 1 2 3 26 26 H 1.09004 * 109.47258 * 306.04964 * 3 2 1 27 27 H 1.08994 * 109.47601 * 186.04556 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.46849 * 53.95180 * 12 2 1 30 30 H 1.09000 * 109.47671 * 173.94991 * 12 2 1 31 31 H 1.09002 * 109.62081 * 304.99206 * 15 13 12 32 32 H 1.08997 * 109.61926 * 65.54287 * 15 13 12 33 33 H 1.09000 * 109.61524 * 194.17273 * 16 15 13 34 34 H 1.08999 * 109.61886 * 314.71259 * 16 15 13 35 35 H 1.09004 * 109.27144 * 65.38001 * 17 16 15 36 36 H 1.09002 * 109.26309 * 184.84237 * 17 16 15 37 37 H 1.08998 * 117.53265 * 217.19302 * 20 18 17 38 38 H 1.08994 * 117.53377 * 2.37277 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0489 6 6 2.0322 3.3473 1.5312 7 7 2.7172 3.9997 0.6176 8 14 1.5944 4.1822 3.1438 9 1 0.8260 3.2399 3.9964 10 1 2.8391 4.5833 3.8474 11 1 0.7705 5.3869 2.8699 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9705 14 1 0.5535 -2.3362 -0.8386 15 6 2.3432 -2.8037 0.2606 16 6 2.0733 -4.3109 0.3363 17 6 2.9130 -5.0105 -0.7326 18 6 2.6363 -4.4129 -2.1033 19 1 3.3622 -4.6811 -2.8708 20 6 1.1996 -4.2382 -2.5779 21 6 2.0545 -3.0128 -2.2194 22 1 2.3928 -2.3993 -3.0546 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.5610 1.9273 -0.8309 27 1 3.0796 1.3444 -0.1082 28 1 2.9950 4.9147 0.7811 29 1 1.5610 -0.3872 -2.0628 30 1 3.0797 -0.6611 -1.1757 31 1 3.4156 -2.6277 0.1753 32 1 1.9601 -2.3178 1.1580 33 1 2.3516 -4.6834 1.3222 34 1 1.0158 -4.5029 0.1548 35 1 3.9700 -4.8913 -0.4948 36 1 2.6656 -6.0720 -0.7464 37 1 0.9923 -4.4167 -3.6330 38 1 0.4035 -4.5177 -1.8879 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694718208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = 6.959461 kcal Electronic energy + Delta-G solvation = -15666.029522 eV Core-core repulsion = 13315.218151 eV Total energy + Delta-G solvation = -2350.811370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62300 -36.45135 -32.99646 -32.50787 -31.03059 -27.16555 -26.49734 -24.61236 -22.68792 -22.22441 -20.74092 -19.83189 -18.24857 -16.37381 -15.90387 -14.88205 -14.50835 -14.33820 -13.98902 -13.62883 -13.29722 -13.17344 -12.67662 -12.19845 -11.89334 -11.70408 -11.32102 -11.18460 -10.87284 -10.78542 -10.69768 -10.62561 -10.57151 -10.36306 -9.95938 -9.91203 -9.53089 -9.37250 -9.08618 -8.40596 -7.14791 -5.99503 -4.00378 3.32821 3.40058 3.45132 3.84303 4.44542 4.66174 4.83210 4.90572 5.09780 5.21130 5.34193 5.37885 5.42513 5.52892 5.63816 5.75967 5.80901 5.85189 5.96797 6.06732 6.14201 6.17213 6.24540 6.35232 6.35621 6.38724 6.45812 6.58039 6.75787 6.79728 6.85321 7.35415 7.40497 7.84952 8.14431 8.26928 8.61303 9.07937 9.63716 11.11567 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050254 B = 0.005667 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.033087 B = 4939.797631 C = 5091.572646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.538 5.538 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.062 3.938 13 C -0.051 4.051 14 H 0.070 0.930 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.086 4.086 18 C -0.140 4.140 19 H 0.092 0.908 20 C -0.187 4.187 21 C -0.137 4.137 22 H 0.099 0.901 23 H 0.009 0.991 24 H 0.045 0.955 25 H 0.071 0.929 26 H -0.011 1.011 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 -15.672 -4.266 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.262 5.262 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.067 4.067 13 C -0.070 4.070 14 H 0.088 0.912 15 C -0.140 4.140 16 C -0.161 4.161 17 C -0.124 4.124 18 C -0.158 4.158 19 H 0.111 0.889 20 C -0.224 4.224 21 C -0.156 4.156 22 H 0.117 0.883 23 H 0.028 0.972 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.007 0.993 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.370 -15.715 -3.867 16.242 hybrid contribution -0.421 1.027 -0.141 1.119 sum -1.791 -14.688 -4.008 15.330 Atomic orbital electron populations 1.22235 0.89287 0.99059 1.00606 1.62076 1.06655 1.17559 1.39928 1.19732 0.95327 0.81758 0.96509 1.21220 1.34414 0.96955 1.01668 0.91833 1.25000 0.95367 0.97399 0.96973 1.69977 1.38550 1.11441 1.34024 0.86454 0.78112 0.79288 0.83636 1.19669 1.21043 1.21168 1.22114 0.99900 0.92316 0.92364 1.20679 0.99727 0.94083 0.92515 0.91182 1.21481 1.00526 0.93420 0.98543 1.21658 0.99632 0.96781 0.98033 1.20832 1.00227 0.98634 0.92688 1.21790 0.96209 0.99325 0.98508 0.88949 1.23097 0.94171 1.04105 1.01058 1.22328 1.03529 0.89748 0.99993 0.88328 0.97240 0.93583 0.91041 0.99313 0.95324 0.93048 0.96251 0.91516 0.92102 0.90368 0.92117 0.92347 0.91664 0.92248 0.89494 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.17 60.06 0.55 1.28 16 2 N -0.54 -11.76 4.30 -244.37 -1.05 -12.81 16 3 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 4 C -0.50 -14.35 8.51 -34.44 -0.29 -14.64 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.06 1.14 4.20 -3.82 -0.02 1.12 16 13 C -0.05 -0.77 2.06 -90.83 -0.19 -0.96 16 14 H 0.07 1.08 6.15 -51.93 -0.32 0.76 16 15 C -0.10 -1.51 5.02 -26.64 -0.13 -1.64 16 16 C -0.12 -1.48 5.71 -26.64 -0.15 -1.63 16 17 C -0.09 -0.94 5.93 -27.27 -0.16 -1.10 16 18 C -0.14 -1.60 6.00 -91.92 -0.55 -2.15 16 19 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.19 -2.12 9.66 -26.74 -0.26 -2.38 16 21 C -0.14 -1.79 5.61 -90.91 -0.51 -2.30 16 22 H 0.10 1.29 7.92 -51.92 -0.41 0.88 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.05 0.78 6.20 -51.92 -0.32 0.46 16 25 H 0.07 1.51 6.86 -51.93 -0.36 1.15 16 26 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 27 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 31 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 32 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.69 7.11 -51.93 -0.37 0.32 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.04 7.26 -51.93 -0.38 0.66 16 LS Contribution 294.32 15.07 4.44 4.44 Total: -1.00 -29.41 294.32 -9.43 -38.84 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.69 Total: -3.02 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.83 Total: -17.88 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.32 Total: -39.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.41 -9.43 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694718208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.802 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds