Wall clock time and date at job start Mon Mar 30 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46895 * 111.00258 * 2 1 4 4 C 1.50702 * 109.46770 * 66.04640 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.46903 * 111.00134 * 236.04665 * 2 1 3 13 13 C 1.53002 * 109.47459 * 293.95705 * 12 2 1 14 14 H 1.08997 * 109.35176 * 54.71487 * 13 12 2 15 15 C 1.52876 * 109.35216 * 294.99651 * 13 12 2 16 16 C 1.53309 * 108.57753 * 185.26665 * 15 13 12 17 17 C 1.52874 * 108.58605 * 74.44486 * 16 15 13 18 18 C 1.52069 * 110.51491 * 305.10543 * 17 16 15 19 19 H 1.08999 * 114.63502 * 165.62788 * 18 17 16 20 20 C 1.52307 * 119.84066 * 310.45212 * 18 17 16 21 21 C 1.52068 * 120.01905 * 21.70602 * 18 17 16 22 22 H 1.09008 * 117.25327 * 144.43606 * 21 18 17 23 23 H 1.08994 * 109.47470 * 59.99796 * 1 2 3 24 24 H 1.09011 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46850 * 299.99524 * 1 2 3 26 26 H 1.09004 * 109.47258 * 306.04964 * 3 2 1 27 27 H 1.08994 * 109.47601 * 186.04556 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.46849 * 53.95180 * 12 2 1 30 30 H 1.09000 * 109.47671 * 173.94991 * 12 2 1 31 31 H 1.09002 * 109.62081 * 304.99206 * 15 13 12 32 32 H 1.08997 * 109.61926 * 65.54287 * 15 13 12 33 33 H 1.09000 * 109.61524 * 194.17273 * 16 15 13 34 34 H 1.08999 * 109.61886 * 314.71259 * 16 15 13 35 35 H 1.09004 * 109.27144 * 65.38001 * 17 16 15 36 36 H 1.09002 * 109.26309 * 184.84237 * 17 16 15 37 37 H 1.08998 * 117.53265 * 217.19302 * 20 18 17 38 38 H 1.08994 * 117.53377 * 2.37277 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0489 6 6 2.0322 3.3473 1.5312 7 7 2.7172 3.9997 0.6176 8 14 1.5944 4.1822 3.1438 9 1 0.8260 3.2399 3.9964 10 1 2.8391 4.5833 3.8474 11 1 0.7705 5.3869 2.8699 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9705 14 1 0.5535 -2.3362 -0.8386 15 6 2.3432 -2.8037 0.2606 16 6 2.0733 -4.3109 0.3363 17 6 2.9130 -5.0105 -0.7326 18 6 2.6363 -4.4129 -2.1033 19 1 3.3622 -4.6811 -2.8708 20 6 1.1996 -4.2382 -2.5779 21 6 2.0545 -3.0128 -2.2194 22 1 2.3928 -2.3993 -3.0546 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.5610 1.9273 -0.8309 27 1 3.0796 1.3444 -0.1082 28 1 2.9950 4.9147 0.7811 29 1 1.5610 -0.3872 -2.0628 30 1 3.0797 -0.6611 -1.1757 31 1 3.4156 -2.6277 0.1753 32 1 1.9601 -2.3178 1.1580 33 1 2.3516 -4.6834 1.3222 34 1 1.0158 -4.5029 0.1548 35 1 3.9700 -4.8913 -0.4948 36 1 2.6656 -6.0720 -0.7464 37 1 0.9923 -4.4167 -3.6330 38 1 0.4035 -4.5177 -1.8879 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694718208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:54 Heat of formation + Delta-G solvation = -9.598816 kcal Electronic energy + Delta-G solvation = -15666.747542 eV Core-core repulsion = 13315.218151 eV Total energy + Delta-G solvation = -2351.529391 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70460 -38.12658 -34.86178 -33.78527 -32.40748 -29.16842 -27.94369 -26.18076 -24.08435 -23.48433 -21.98643 -21.37537 -19.26871 -18.52529 -17.09924 -16.61375 -16.10511 -16.01692 -15.12543 -15.01537 -14.64103 -14.52727 -14.05328 -13.77931 -13.49436 -13.08859 -12.97408 -12.69932 -12.54397 -12.34811 -12.31882 -12.08473 -11.84858 -11.75522 -11.59501 -11.24581 -11.07227 -10.63174 -10.52744 -10.40043 -8.98911 -8.20966 -6.31324 1.40795 1.41558 1.55496 2.40287 2.91116 3.11392 3.29417 3.78249 3.84820 3.95038 4.18726 4.24740 4.31341 4.42705 4.50002 4.56766 4.63793 4.70521 4.77700 4.82570 4.91970 4.96670 5.02188 5.08227 5.17196 5.19526 5.28571 5.33365 5.34419 5.39942 5.46574 5.56701 5.62979 5.65902 6.04832 6.34255 6.64601 6.85577 7.38656 8.90690 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050254 B = 0.005667 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.033087 B = 4939.797631 C = 5091.572646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.206 3.794 4 C -0.521 4.521 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.972 3.028 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.063 3.937 13 C -0.039 4.039 14 H 0.071 0.929 15 C -0.101 4.101 16 C -0.117 4.117 17 C -0.086 4.086 18 C -0.134 4.134 19 H 0.105 0.895 20 C -0.173 4.173 21 C -0.160 4.160 22 H 0.094 0.906 23 H 0.005 0.995 24 H 0.080 0.920 25 H 0.057 0.943 26 H -0.042 1.042 27 H 0.000 1.000 28 H 0.264 0.736 29 H 0.016 0.984 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -17.481 -3.708 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.080 3.920 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.065 4.065 13 C -0.057 4.057 14 H 0.089 0.911 15 C -0.139 4.139 16 C -0.155 4.155 17 C -0.123 4.123 18 C -0.152 4.152 19 H 0.123 0.877 20 C -0.210 4.210 21 C -0.179 4.179 22 H 0.112 0.888 23 H 0.024 0.976 24 H 0.099 0.901 25 H 0.076 0.924 26 H -0.024 1.024 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.154 -17.550 -3.316 17.990 hybrid contribution -0.160 1.574 -0.369 1.625 sum -2.315 -15.976 -3.685 16.558 Atomic orbital electron populations 1.22231 0.87823 1.00988 0.99686 1.62007 1.07985 1.14820 1.41765 1.19396 0.93485 0.84114 0.95008 1.21506 1.34639 0.97593 1.02212 0.91754 1.25962 0.94969 0.98073 1.00861 1.70107 1.39453 1.11965 1.36265 0.85291 0.78080 0.78160 0.78816 1.18596 1.20372 1.20371 1.22186 0.98956 0.94401 0.90964 1.20536 0.99702 0.91516 0.93975 0.91079 1.21426 0.99544 0.95677 0.97245 1.21607 1.00298 0.94358 0.99204 1.20862 1.00102 0.99601 0.91776 1.21916 0.96753 0.97273 0.99234 0.87733 1.23163 0.94142 1.01599 1.02076 1.22203 1.06196 0.90627 0.98896 0.88823 0.97639 0.90144 0.92435 1.02403 0.98159 0.92696 0.96608 0.92831 0.93271 0.92685 0.91141 0.91752 0.91525 0.90132 0.88057 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.17 127.69 1.17 2.80 16 2 N -0.54 -24.31 4.30 -927.06 -3.99 -28.30 16 3 C 0.21 11.48 4.72 85.56 0.40 11.89 16 4 C -0.52 -30.33 8.51 25.60 0.22 -30.11 16 5 H 0.06 3.66 7.10 -2.91 -0.02 3.64 16 6 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 7 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 8 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.06 2.39 4.20 86.30 0.36 2.76 16 13 C -0.04 -1.14 2.06 -10.93 -0.02 -1.16 16 14 H 0.07 2.07 6.15 -2.39 -0.01 2.05 16 15 C -0.10 -2.92 5.02 30.66 0.15 -2.77 16 16 C -0.12 -2.54 5.71 30.66 0.17 -2.37 16 17 C -0.09 -1.62 5.93 30.25 0.18 -1.44 16 18 C -0.13 -2.69 6.00 -11.64 -0.07 -2.76 16 19 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 20 C -0.17 -3.39 9.66 30.59 0.30 -3.10 16 21 C -0.16 -3.95 5.61 -10.98 -0.06 -4.02 16 22 H 0.09 2.39 7.92 -2.38 -0.02 2.37 16 23 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 24 H 0.08 2.63 6.20 -2.38 -0.01 2.62 16 25 H 0.06 2.44 6.86 -2.39 -0.02 2.42 16 26 H -0.04 -2.52 8.12 -2.38 -0.02 -2.54 16 27 H 0.00 0.02 7.93 -2.39 -0.02 0.00 16 28 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 29 H 0.02 0.60 8.12 -2.38 -0.02 0.58 16 30 H 0.05 2.13 7.93 -2.39 -0.02 2.12 16 31 H 0.05 1.51 8.04 -2.39 -0.02 1.49 16 32 H 0.05 1.82 7.91 -2.39 -0.02 1.81 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.33 7.11 -2.39 -0.02 1.32 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 1.84 7.26 -2.39 -0.02 1.82 16 Total: -1.00 -63.97 294.32 2.59 -61.39 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.00 Total: 7.21 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.27 Total: -29.88 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.70 Total: -85.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.97 2.59 -61.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694718208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.786 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds