Wall clock time and date at job start Mon Mar 30 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47464 * 2 1 4 4 C 1.52997 * 109.47391 * 120.00179 * 2 1 3 5 5 C 1.50699 * 109.47402 * 184.99951 * 4 2 1 6 6 H 1.08000 * 120.00084 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00627 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99390 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00623 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47329 * 89.99635 * 9 7 5 11 11 H 1.48502 * 109.47194 * 210.00019 * 9 7 5 12 12 H 1.48511 * 109.46993 * 330.00055 * 9 7 5 13 13 N 1.46903 * 109.47232 * 240.00067 * 2 1 3 14 14 C 1.46904 * 110.99548 * 70.25912 * 13 2 1 15 15 C 1.53004 * 109.46856 * 162.68214 * 14 13 2 16 16 C 1.52997 * 117.49943 * 247.19447 * 15 14 13 17 17 C 1.52995 * 60.00077 * 252.50989 * 16 15 14 18 18 C 1.46895 * 111.00008 * 306.31032 * 13 2 1 19 19 C 1.53004 * 117.49713 * 269.87887 * 18 13 2 20 20 C 1.53000 * 117.50235 * 201.21696 * 18 13 2 21 21 H 1.09001 * 109.46969 * 179.11189 * 1 2 3 22 22 H 1.09001 * 109.46900 * 299.10676 * 1 2 3 23 23 H 1.09000 * 109.47456 * 59.10770 * 1 2 3 24 24 H 1.08996 * 109.47078 * 304.99548 * 4 2 1 25 25 H 1.09005 * 109.47115 * 65.00059 * 4 2 1 26 26 H 0.97001 * 119.99487 * 180.02562 * 8 7 5 27 27 H 1.08994 * 109.47586 * 282.67751 * 14 13 2 28 28 H 1.08992 * 109.47355 * 42.68731 * 14 13 2 29 29 H 1.09003 * 115.54949 * 32.89752 * 15 14 13 30 30 H 1.08998 * 117.50209 * 0.02562 * 16 15 14 31 31 H 1.09000 * 117.49919 * 145.01910 * 16 15 14 32 32 H 1.08998 * 117.49899 * 252.51169 * 17 16 15 33 33 H 1.08997 * 117.51856 * 107.47812 * 17 16 15 34 34 H 1.09009 * 115.55232 * 55.54734 * 18 13 2 35 35 H 1.08993 * 117.49697 * 359.97438 * 19 18 13 36 36 H 1.09003 * 117.49830 * 145.02059 * 19 18 13 37 37 H 1.09001 * 117.50669 * 214.97808 * 20 18 13 38 38 H 1.08999 * 117.49616 * 359.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0790 -0.0862 0.5391 7 6 4.2305 -1.1935 2.3576 8 7 3.5765 -1.8379 3.2993 9 14 6.0921 -1.0611 2.4367 10 1 6.4699 0.1609 3.1909 11 1 6.6447 -2.2568 3.1225 12 1 6.6417 -0.9823 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 1.7583 0.1001 -2.4084 15 6 2.6344 -0.4122 -3.5534 16 6 3.7347 0.5163 -4.0711 17 6 2.4840 0.2665 -4.9163 18 6 1.4295 -2.0330 -1.3112 19 6 2.1783 -3.1919 -0.6498 20 6 2.1656 -3.0593 -2.1748 21 1 -0.3633 -1.0276 -0.0159 22 1 -0.3633 0.4999 0.8979 23 1 -0.3634 0.5276 -0.8819 24 1 1.6055 -0.2617 2.1369 25 1 1.7517 -1.7716 1.2055 26 1 4.0610 -2.2446 4.0347 27 1 0.7082 0.0063 -2.6846 28 1 1.9907 1.1471 -2.2137 29 1 2.8417 -1.4824 -3.5441 30 1 3.8347 1.4921 -3.5958 31 1 4.6660 0.0572 -4.4025 32 1 2.5926 -0.3569 -5.8037 33 1 1.7607 1.0778 -4.9973 34 1 0.3400 -2.0691 -1.3054 35 1 3.1089 -2.9596 -0.1322 36 1 1.5814 -3.9905 -0.2092 37 1 1.5606 -3.7708 -2.7368 38 1 3.0876 -2.7396 -2.6604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695777086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:00 Heat of formation + Delta-G solvation = 53.872151 kcal Electronic energy + Delta-G solvation = -16108.201631 eV Core-core repulsion = 13759.424548 eV Total energy + Delta-G solvation = -2348.777083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.81595 -36.51991 -34.44154 -32.56813 -30.21724 -27.22778 -25.41825 -23.03460 -22.16697 -21.85825 -21.43649 -19.84028 -18.46395 -16.10824 -15.59734 -15.39965 -14.80836 -14.35952 -14.04809 -13.55756 -12.90313 -12.63000 -12.36422 -11.88684 -11.72968 -11.43365 -11.32205 -11.23181 -10.82384 -10.64768 -10.56569 -10.41949 -10.19818 -9.92890 -9.71026 -9.40593 -9.35816 -9.07207 -8.85603 -8.20513 -7.43775 -5.84007 -3.80845 3.40952 3.47486 3.52658 4.01442 4.43377 4.53897 4.60247 5.01824 5.20173 5.26730 5.51384 5.55133 5.62339 5.73856 5.76882 5.82695 5.86519 5.89959 5.99307 6.06778 6.11020 6.13220 6.23097 6.28762 6.32429 6.52229 6.58929 6.72449 6.79092 7.06600 7.16295 7.62423 7.81646 8.01021 8.10820 8.18860 8.65359 9.25427 9.79953 11.27810 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.009198 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.561650 B = 3043.288303 C = 3387.824762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.482 5.482 14 C 0.089 3.911 15 C -0.144 4.144 16 C -0.176 4.176 17 C -0.191 4.191 18 C 0.016 3.984 19 C -0.146 4.146 20 C -0.189 4.189 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.037 0.963 24 H 0.014 0.986 25 H 0.029 0.971 26 H 0.256 0.744 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 1.296 -12.343 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.018 4.018 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.205 5.205 14 C -0.039 4.039 15 C -0.163 4.163 16 C -0.213 4.213 17 C -0.229 4.229 18 C -0.093 4.093 19 C -0.183 4.183 20 C -0.226 4.226 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.731 1.158 -12.128 12.742 hybrid contribution 0.148 0.188 0.054 0.245 sum -3.583 1.346 -12.075 12.667 Atomic orbital electron populations 1.22529 0.99881 1.01274 1.00551 1.21925 0.90006 0.97928 0.91906 0.91479 1.19230 0.96154 0.96159 0.89379 1.21152 0.91856 1.32575 1.06717 0.92348 1.24972 0.97665 0.96060 0.96096 1.69969 1.35016 1.37090 1.12346 0.86712 0.86846 0.77164 0.77972 1.21129 1.21628 1.19935 1.61856 1.57304 1.00385 1.00975 1.21574 0.95732 0.96883 0.89734 1.22685 1.00788 0.99677 0.93112 1.22919 0.93090 1.01339 1.03995 1.22921 1.01249 1.03749 0.94938 1.22145 0.93962 0.87399 1.05790 1.23047 1.04084 0.97977 0.93228 1.23151 1.02578 1.01874 0.95003 0.92769 0.92624 0.94373 0.96779 0.95236 0.93439 0.95343 0.91594 0.86325 0.89088 0.89349 0.89390 0.89449 0.90805 0.86210 0.90009 0.90056 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.57 37.15 0.32 -2.89 16 2 C 0.09 1.85 2.24 -67.72 -0.15 1.69 16 3 H 0.07 1.41 7.84 -51.93 -0.41 1.00 16 4 C 0.03 0.70 4.11 -27.89 -0.11 0.59 16 5 C -0.48 -13.40 8.35 -34.44 -0.29 -13.69 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 9 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.48 -9.17 4.24 -218.72 -0.93 -10.10 16 14 C 0.09 1.43 4.66 -3.82 -0.02 1.41 16 15 C -0.14 -2.11 5.70 -90.62 -0.52 -2.63 16 16 C -0.18 -2.38 10.18 -26.74 -0.27 -2.65 16 17 C -0.19 -2.31 10.25 -26.73 -0.27 -2.58 16 18 C 0.02 0.28 3.69 -67.71 -0.25 0.03 16 19 C -0.15 -2.76 8.52 -26.69 -0.23 -2.99 16 20 C -0.19 -3.00 9.04 -26.69 -0.24 -3.24 16 21 H 0.05 0.95 6.22 -51.93 -0.32 0.62 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.59 7.15 -51.93 -0.37 0.22 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.78 5.80 -51.93 -0.30 0.47 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.44 7.37 -51.93 -0.38 0.06 16 28 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 29 H 0.12 1.79 4.23 -51.93 -0.22 1.57 16 30 H 0.09 1.23 8.04 -51.93 -0.42 0.82 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.28 6.37 -51.92 -0.33 0.95 16 35 H 0.12 2.74 7.48 -51.93 -0.39 2.35 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.10 1.58 6.01 -51.93 -0.31 1.27 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -28.85 296.23 -9.23 -38.08 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.35 Total: 2.36 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -2.13 Total: -25.59 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.19 Total: -36.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.85 -9.23 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.951 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds