Wall clock time and date at job start Mon Mar 30 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47111 * 2 1 4 4 C 1.53004 * 109.47002 * 240.00011 * 2 1 3 5 5 C 1.50698 * 109.46740 * 175.00173 * 4 2 1 6 6 H 1.07995 * 120.00733 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99543 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99881 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46916 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46995 * 299.99565 * 9 7 5 12 12 H 1.48501 * 109.47043 * 59.99661 * 9 7 5 13 13 N 1.46901 * 109.47365 * 119.99906 * 2 1 3 14 14 C 1.46900 * 111.00212 * 258.85030 * 13 2 1 15 15 C 1.53002 * 109.63791 * 296.14250 * 14 13 2 16 16 C 1.53017 * 109.64416 * 56.77465 * 14 13 2 17 17 C 1.50065 * 110.15001 * 169.11979 * 16 14 13 18 18 C 1.29444 * 124.07370 * 342.87768 * 17 16 14 19 19 C 1.50065 * 124.07665 * 0.45891 * 18 17 16 20 20 C 1.53022 * 110.15001 * 342.87511 * 19 18 17 21 21 H 1.08997 * 109.47477 * 185.85062 * 1 2 3 22 22 H 1.09008 * 109.46754 * 305.84481 * 1 2 3 23 23 H 1.09000 * 109.47351 * 65.84068 * 1 2 3 24 24 H 1.08997 * 109.46879 * 55.00201 * 4 2 1 25 25 H 1.08997 * 109.46649 * 294.99901 * 4 2 1 26 26 H 0.96999 * 120.00313 * 0.02562 * 8 7 5 27 27 H 1.00893 * 111.00169 * 134.89151 * 13 2 1 28 28 H 1.08999 * 109.46945 * 59.54965 * 15 14 13 29 29 H 1.08997 * 109.47556 * 179.55496 * 15 14 13 30 30 H 1.09003 * 109.47220 * 299.55484 * 15 14 13 31 31 H 1.08997 * 109.36453 * 289.33357 * 16 14 13 32 32 H 1.09010 * 109.35854 * 48.91587 * 16 14 13 33 33 H 1.08001 * 117.96643 * 162.88837 * 17 16 14 34 34 H 1.08004 * 117.96352 * 180.44599 * 18 17 16 35 35 H 1.08997 * 109.36239 * 222.66537 * 19 18 17 36 36 H 1.09004 * 109.35486 * 103.07761 * 19 18 17 37 37 H 1.08999 * 109.63933 * 289.75214 * 20 19 18 38 38 H 1.09000 * 109.64672 * 169.11640 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3001 9 14 6.0920 -1.0603 -2.4374 10 1 6.5869 -1.7605 -3.6499 11 1 6.4843 0.3707 -2.4967 12 1 6.6845 -1.6864 -1.2282 13 7 2.0197 -0.6925 1.1994 14 6 2.4452 0.2688 2.2255 15 6 3.6347 1.0803 1.7081 16 6 1.2850 1.2073 2.5640 17 6 1.6129 2.0151 3.7854 18 6 2.5534 1.7147 4.6225 19 6 3.4536 0.5221 4.4834 20 6 2.8492 -0.4827 3.5003 21 1 -0.3634 -1.0223 0.1048 22 1 -0.3633 0.6019 0.8331 23 1 -0.3634 0.4206 -0.9376 24 1 1.6053 -0.2617 -2.1369 25 1 1.7516 -1.7715 -1.2055 26 1 2.6095 -1.9054 -3.2592 27 1 2.7670 -1.3300 0.9691 28 1 3.3448 1.6126 0.8022 29 1 3.9432 1.7980 2.4682 30 1 4.4635 0.4084 1.4851 31 1 1.1063 1.8786 1.7240 32 1 0.3867 0.6185 2.7506 33 1 1.0278 2.9022 3.9780 34 1 2.6994 2.3628 5.4741 35 1 3.5763 0.0465 5.4564 36 1 4.4276 0.8457 4.1163 37 1 1.9697 -0.9475 3.9458 38 1 3.5876 -1.2466 3.2568 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695836414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:45 Heat of formation + Delta-G solvation = -26.484468 kcal Electronic energy + Delta-G solvation = -16240.281670 eV Core-core repulsion = 13888.020062 eV Total energy + Delta-G solvation = -2352.261608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78714 -37.46978 -34.96350 -32.97781 -31.59856 -29.14154 -29.05712 -27.83411 -24.99135 -24.16705 -21.76145 -20.93801 -18.93930 -17.85696 -17.46962 -16.33704 -15.83172 -15.65108 -15.35675 -14.99005 -14.80849 -14.21424 -13.92424 -13.63012 -13.37454 -13.19169 -12.99579 -12.90302 -12.71932 -12.51629 -12.40014 -12.29876 -11.98925 -11.75287 -11.41061 -11.09753 -10.95856 -10.60872 -10.53693 -9.81464 -9.16711 -8.64167 -6.34229 1.46769 1.49639 1.57354 1.75779 2.55543 3.15301 3.36296 3.74364 3.96141 4.14905 4.21255 4.31692 4.45075 4.49627 4.55793 4.57170 4.66421 4.70054 4.80448 4.85521 4.99528 5.02449 5.05397 5.07711 5.14573 5.21081 5.23679 5.32860 5.36998 5.44033 5.56623 5.83653 6.04285 6.11313 6.23095 6.42877 6.57529 6.66894 7.47355 8.75762 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031107 B = 0.008517 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.895352 B = 3286.856788 C = 3887.219719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.102 3.898 3 H 0.038 0.962 4 C 0.005 3.995 5 C -0.606 4.606 6 H 0.062 0.938 7 C -0.039 4.039 8 N -0.941 5.941 9 Si 1.110 2.890 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.267 1.267 13 N -0.673 5.673 14 C 0.111 3.889 15 C -0.168 4.168 16 C -0.075 4.075 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.089 4.089 20 C -0.102 4.102 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.045 0.955 24 H -0.015 1.015 25 H -0.010 1.010 26 H 0.254 0.746 27 H 0.340 0.660 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 6.911 15.955 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.008 4.008 3 H 0.056 0.944 4 C -0.033 4.033 5 C -0.644 4.644 6 H 0.080 0.920 7 C -0.236 4.236 8 N -0.579 5.579 9 Si 0.932 3.068 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.192 1.192 13 N -0.304 5.304 14 C 0.020 3.980 15 C -0.226 4.226 16 C -0.112 4.112 17 C -0.179 4.179 18 C -0.174 4.174 19 C -0.126 4.126 20 C -0.140 4.140 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.004 0.996 25 H 0.008 0.992 26 H 0.063 0.937 27 H 0.158 0.842 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.848 6.401 15.331 16.635 hybrid contribution -0.757 0.551 -0.205 0.958 sum -1.604 6.952 15.126 16.724 Atomic orbital electron populations 1.21877 0.94925 1.01480 1.00775 1.21293 0.94605 0.95755 0.89168 0.94360 1.19463 0.95961 0.94277 0.93569 1.22491 0.93004 1.37478 1.11415 0.91989 1.27258 1.10849 0.92951 0.92532 1.70905 1.09605 1.41936 1.35450 0.83017 0.69822 0.77191 0.76741 1.21255 1.19805 1.19248 1.60874 1.40787 1.18630 1.10100 1.21017 0.93223 0.91670 0.92053 1.22498 0.98742 1.00693 1.00687 1.20516 0.97772 0.96614 0.96282 1.22121 0.99659 1.00181 0.95897 1.22207 0.96969 0.98638 0.99566 1.20514 0.98300 0.94174 0.99610 1.21561 1.00694 0.97602 0.94117 0.93319 0.91368 0.93623 0.99642 0.99210 0.93652 0.84163 0.94376 0.90790 0.93967 0.92309 0.90532 0.86596 0.86059 0.89359 0.90724 0.91479 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.26 71.98 0.67 -4.08 16 2 C 0.10 4.23 1.76 44.92 0.08 4.31 16 3 H 0.04 1.65 5.02 -2.38 -0.01 1.64 16 4 C 0.00 0.25 3.75 29.85 0.11 0.36 16 5 C -0.61 -33.63 8.15 25.60 0.21 -33.42 16 6 H 0.06 3.29 5.73 -2.91 -0.02 3.27 16 7 C -0.04 -2.22 5.46 84.66 0.46 -1.76 16 8 N -0.94 -58.96 13.65 21.45 0.29 -58.67 16 9 Si 1.11 50.52 29.90 68.60 2.05 52.57 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 13 N -0.67 -25.66 5.95 -447.60 -2.66 -28.33 16 14 C 0.11 3.50 0.68 3.67 0.00 3.50 16 15 C -0.17 -5.57 6.71 71.98 0.48 -5.09 16 16 C -0.07 -2.08 3.42 29.65 0.10 -1.98 16 17 C -0.16 -3.63 9.41 27.04 0.25 -3.37 16 18 C -0.16 -3.18 9.15 27.04 0.25 -2.94 16 19 C -0.09 -1.88 5.48 29.66 0.16 -1.72 16 20 C -0.10 -2.73 5.24 30.73 0.16 -2.57 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.07 2.09 5.88 -2.38 -0.01 2.08 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 24 H -0.01 -0.83 8.01 -2.39 -0.02 -0.85 16 25 H -0.01 -0.59 8.01 -2.39 -0.02 -0.61 16 26 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 27 H 0.34 14.59 7.39 -89.70 -0.66 13.93 16 28 H 0.04 1.43 6.11 -2.39 -0.01 1.41 16 29 H 0.07 2.10 5.73 -2.39 -0.01 2.09 16 30 H 0.04 1.51 7.48 -2.39 -0.02 1.49 16 31 H 0.06 1.74 6.59 -2.39 -0.02 1.73 16 32 H 0.08 2.17 7.44 -2.38 -0.02 2.15 16 33 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.12 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.60 6.93 -2.39 -0.02 1.58 16 37 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -62.41 283.64 3.09 -59.33 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.47 Total: 23.86 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 2.94 Total: -48.76 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.37 Total: -86.99 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.57 kcal Total: -62.41 3.09 -59.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.842 kcal (2) G-P(sol) polarization free energy of solvation -62.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds