Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46936 * 119.99726 * 9 7 5 12 12 H 1.48497 * 109.47316 * 239.99974 * 9 7 5 13 13 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 14 14 C 1.46911 * 110.99614 * 85.00357 * 13 2 1 15 15 C 1.52993 * 109.46779 * 179.97438 * 14 13 2 16 16 H 1.09004 * 109.64467 * 304.57685 * 15 14 13 17 17 C 1.53029 * 109.64565 * 64.99846 * 15 14 13 18 18 C 1.50065 * 110.14875 * 169.11264 * 17 15 14 19 19 C 1.29440 * 124.07941 * 342.87687 * 18 17 15 20 20 C 1.50065 * 124.07509 * 0.48451 * 19 18 17 21 21 C 1.53044 * 110.14117 * 342.83474 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 26 26 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 27 27 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.00897 * 111.00496 * 208.95166 * 13 2 1 29 29 H 1.09000 * 109.46786 * 299.99838 * 14 13 2 30 30 H 1.09000 * 109.46923 * 59.99884 * 14 13 2 31 31 H 1.08990 * 109.35921 * 289.32694 * 17 15 14 32 32 H 1.09007 * 109.35111 * 48.91008 * 17 15 14 33 33 H 1.08002 * 117.95868 * 162.88898 * 18 17 15 34 34 H 1.08001 * 117.96717 * 180.46443 * 19 18 17 35 35 H 1.08997 * 109.36064 * 103.05160 * 20 19 18 36 36 H 1.08997 * 109.36226 * 222.64409 * 20 19 18 37 37 H 1.08996 * 109.65453 * 289.78248 * 21 20 19 38 38 H 1.08999 * 109.63998 * 169.13882 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.5838 -0.2921 1.2656 11 1 6.4870 -0.3650 3.6872 12 1 6.6854 -2.4227 2.4196 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2226 -2.3469 15 6 2.5962 -0.5330 -3.5741 16 1 3.5558 -0.9962 -3.3441 17 6 1.5871 -1.6116 -3.9739 18 6 1.9418 -2.1791 -5.3171 19 6 2.7430 -1.6069 -6.1575 20 6 3.4372 -0.3013 -5.9019 21 6 2.7569 0.4403 -4.7488 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6055 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2057 27 1 4.0606 -2.2423 4.0363 28 1 2.9173 -1.1206 -1.0288 29 1 1.0871 0.6162 -2.5525 30 1 2.7589 1.0461 -2.1182 31 1 1.5970 -2.4089 -3.2308 32 1 0.5896 -1.1743 -4.0184 33 1 1.5011 -3.1235 -5.6002 34 1 2.9234 -2.1000 -7.1013 35 1 4.4795 -0.4904 -5.6451 36 1 3.3944 0.3129 -6.8013 37 1 1.7767 0.7942 -5.0681 38 1 3.3733 1.2856 -4.4426 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695859662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -35.081728 kcal Electronic energy + Delta-G solvation = -15423.955903 eV Core-core repulsion = 13071.321490 eV Total energy + Delta-G solvation = -2352.634413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80095 -37.87599 -34.94245 -33.41707 -31.61812 -30.34124 -29.27353 -25.92441 -24.85107 -23.67065 -21.76090 -21.01193 -18.74279 -18.51092 -17.04275 -16.55364 -16.31695 -15.85291 -15.37657 -14.76560 -14.51342 -14.19818 -13.68675 -13.60997 -13.46119 -13.20817 -13.10574 -13.04719 -12.70871 -12.59362 -12.42216 -12.32436 -12.01194 -11.55082 -11.36793 -11.14903 -10.96905 -10.85450 -10.58431 -9.78913 -9.12928 -8.19966 -6.30351 1.38296 1.39136 1.48764 1.51093 2.39559 3.11639 3.44140 3.84774 3.90620 4.07446 4.31711 4.38174 4.44518 4.53646 4.64302 4.64712 4.71270 4.76753 4.88075 4.92569 4.96142 5.03719 5.07353 5.16456 5.23096 5.29083 5.34558 5.40236 5.49125 5.55085 5.59296 5.84379 5.85798 6.15451 6.21057 6.46002 6.67603 6.85056 7.38432 8.91949 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027318 B = 0.006498 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.714697 B = 4307.778561 C = 4885.256896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.095 3.905 3 H 0.021 0.979 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.067 3.933 15 C -0.080 4.080 16 H 0.055 0.945 17 C -0.073 4.073 18 C -0.164 4.164 19 C -0.165 4.165 20 C -0.090 4.090 21 C -0.111 4.111 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.049 0.951 25 H -0.006 1.006 26 H -0.003 1.003 27 H 0.263 0.737 28 H 0.340 0.660 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 3.351 -17.516 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.015 4.015 3 H 0.039 0.961 4 C -0.011 4.011 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.314 5.314 14 C -0.062 4.062 15 C -0.099 4.099 16 H 0.074 0.926 17 C -0.110 4.110 18 C -0.182 4.182 19 C -0.182 4.182 20 C -0.127 4.127 21 C -0.149 4.149 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.012 0.988 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.583 3.013 -17.530 17.973 hybrid contribution 1.599 0.255 0.925 1.865 sum -0.985 3.267 -16.604 16.951 Atomic orbital electron populations 1.21695 0.94504 1.01383 1.00829 1.21423 0.95119 0.94660 0.90303 0.96056 1.19147 0.94848 0.94743 0.92313 1.21535 0.93285 1.33976 1.08238 0.92617 1.25891 1.03355 0.94832 0.95346 1.70102 1.37469 1.36808 1.12689 0.85465 0.79824 0.77950 0.78188 1.18778 1.20604 1.20450 1.60605 1.33724 1.32686 1.04370 1.22057 1.00073 0.93459 0.90604 1.21151 0.98532 0.96284 0.93943 0.92600 1.20294 0.98547 0.97836 0.94320 1.22251 0.99929 1.00123 0.95881 1.22220 0.98717 0.97724 0.99586 1.20468 0.99037 0.94397 0.98750 1.21608 1.01349 0.97449 0.94454 0.92021 0.93044 0.93210 0.98781 0.98425 0.92829 0.84098 0.90930 0.96563 0.91915 0.91081 0.87512 0.86834 0.91082 0.89517 0.91248 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.41 71.98 0.68 -3.82 16 2 C 0.09 3.99 2.59 44.92 0.12 4.11 16 3 H 0.02 0.92 7.80 -2.39 -0.02 0.91 16 4 C 0.03 1.42 4.57 29.85 0.14 1.56 16 5 C -0.53 -29.80 8.12 25.60 0.21 -29.59 16 6 H 0.06 3.01 7.49 -2.91 -0.02 2.99 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 9 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.68 -26.07 5.97 -491.55 -2.94 -29.01 16 14 C 0.07 2.08 4.88 86.30 0.42 2.50 16 15 C -0.08 -2.14 2.39 -10.65 -0.03 -2.16 16 16 H 0.06 1.65 8.13 -2.38 -0.02 1.64 16 17 C -0.07 -1.90 5.21 29.66 0.15 -1.74 16 18 C -0.16 -3.69 9.80 27.04 0.27 -3.42 16 19 C -0.16 -3.29 9.80 27.04 0.27 -3.03 16 20 C -0.09 -1.68 6.12 29.66 0.18 -1.50 16 21 C -0.11 -2.35 5.31 30.74 0.16 -2.19 16 22 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 28 H 0.34 14.48 7.21 -89.70 -0.65 13.84 16 29 H 0.07 2.09 7.40 -2.39 -0.02 2.07 16 30 H 0.02 0.52 8.06 -2.39 -0.02 0.50 16 31 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 32 H 0.07 1.80 8.08 -2.38 -0.02 1.78 16 33 H 0.11 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.11 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -61.13 302.99 2.75 -58.38 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.35 Total: 19.28 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.03 Total: -38.62 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.65 Total: -85.36 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.13 2.75 -58.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695859662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.301 kcal (2) G-P(sol) polarization free energy of solvation -61.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds