Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99700 * 2 1 4 4 H 1.08006 * 119.99886 * 201.97500 * 3 2 1 5 5 C 1.38819 * 120.00290 * 21.98007 * 3 2 1 6 6 N 1.31615 * 119.99850 * 14.29148 * 5 3 2 7 7 Si 1.86794 * 119.99683 * 194.29380 * 5 3 2 8 8 H 1.48500 * 109.47527 * 60.00259 * 7 5 3 9 9 H 1.48504 * 109.47134 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47661 * 299.99711 * 7 5 3 11 11 C 1.46492 * 119.99801 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47329 * 90.00242 * 11 2 1 13 13 C 1.52945 * 109.41220 * 184.99749 * 12 11 2 14 14 C 1.53180 * 109.44435 * 176.90980 * 13 12 11 15 15 C 1.53142 * 108.88560 * 56.56988 * 14 13 12 16 16 C 1.52847 * 117.67999 * 91.49170 * 15 14 13 17 17 C 1.52816 * 117.75174 * 160.37111 * 15 14 13 18 18 C 1.53157 * 115.00911 * 306.05556 * 15 14 13 19 19 C 1.52948 * 109.41072 * 64.63655 * 12 11 2 20 20 H 1.08999 * 109.47119 * 275.13650 * 1 2 3 21 21 H 1.09008 * 109.47299 * 35.12875 * 1 2 3 22 22 H 1.08997 * 109.47358 * 155.13504 * 1 2 3 23 23 H 0.97001 * 119.99963 * 179.97438 * 6 5 3 24 24 H 1.08996 * 109.47466 * 329.99499 * 11 2 1 25 25 H 1.09010 * 109.47137 * 209.99993 * 11 2 1 26 26 H 1.08996 * 109.35106 * 304.82410 * 12 11 2 27 27 H 1.09000 * 109.47662 * 296.89952 * 13 12 11 28 28 H 1.08997 * 109.47241 * 56.91781 * 13 12 11 29 29 H 1.09005 * 109.56459 * 176.39261 * 14 13 12 30 30 H 1.09002 * 109.56893 * 296.74602 * 14 13 12 31 31 H 1.09001 * 117.50733 * 215.22357 * 16 15 14 32 32 H 1.09007 * 117.50108 * 0.26982 * 16 15 14 33 33 H 1.09001 * 117.49901 * 359.84737 * 17 15 14 34 34 H 1.08997 * 117.50391 * 144.88907 * 17 15 14 35 35 H 1.08999 * 109.56952 * 294.11931 * 18 15 14 36 36 H 1.08999 * 109.56587 * 173.76033 * 18 15 14 37 37 H 1.08998 * 109.47385 * 303.08786 * 19 12 11 38 38 H 1.08995 * 109.47145 * 63.10056 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1708 1.2199 -0.3500 5 6 1.5312 2.3445 0.4500 6 7 0.4075 2.2686 1.1309 7 14 2.2940 4.0109 0.0889 8 1 2.3905 4.2033 -1.3804 9 1 1.4456 5.0807 0.6729 10 1 3.6519 4.0738 0.6866 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.1058 -3.0939 -1.4413 14 6 3.2910 -3.5708 -2.8851 15 6 4.1165 -2.5311 -3.6485 16 6 5.6344 -2.7092 -3.6741 17 6 4.8098 -2.9779 -4.9349 18 6 3.5688 -1.1019 -3.5931 19 6 3.3749 -0.7018 -2.1273 20 1 -0.3633 0.0920 1.0235 21 1 -0.3634 0.8405 -0.5914 22 1 -0.3634 -0.9324 -0.4321 23 1 -0.0245 3.0781 1.4456 24 1 1.6084 -2.0281 0.5148 25 1 3.1499 -1.1381 0.5144 26 1 1.5048 -1.7581 -1.9780 27 1 4.0771 -3.0369 -0.9500 28 1 2.4680 -3.7969 -0.9054 29 1 3.8141 -4.5271 -2.8894 30 1 2.3165 -3.6837 -3.3602 31 1 6.2474 -1.8081 -3.6561 32 1 6.0490 -3.5707 -3.1506 33 1 4.6821 -4.0163 -5.2409 34 1 4.8804 -2.2537 -5.7464 35 1 2.6121 -1.0571 -4.1135 36 1 4.2762 -0.4212 -4.0669 37 1 2.9279 0.2911 -2.0777 38 1 4.3409 -0.6912 -1.6227 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696207182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = 8.582698 kcal Electronic energy + Delta-G solvation = -16008.556395 eV Core-core repulsion = 13657.815413 eV Total energy + Delta-G solvation = -2350.740981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36238 -37.85177 -35.50137 -32.95849 -31.73016 -29.61202 -27.88747 -25.92124 -23.70632 -23.31985 -22.73710 -21.04606 -19.50830 -18.57826 -16.90517 -16.16587 -16.12420 -15.61467 -15.28742 -14.92211 -14.29794 -14.25940 -14.03314 -13.65617 -13.08066 -12.91635 -12.88847 -12.65125 -12.44407 -12.27467 -12.20198 -11.97910 -11.93112 -11.87040 -11.73989 -11.25432 -10.76146 -10.70429 -10.57658 -10.32876 -8.69596 -7.77796 -5.23756 1.45423 1.47855 1.54017 2.53420 2.95182 3.34214 3.70401 3.82735 3.90664 4.01312 4.12411 4.24753 4.39985 4.54652 4.60076 4.70068 4.75233 4.83078 4.84112 4.86823 4.97815 5.08697 5.10194 5.14900 5.24296 5.28068 5.32110 5.32693 5.36307 5.45095 5.52349 5.67131 5.72125 5.74429 5.79867 6.37769 7.20158 7.94113 8.38424 9.25635 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.007558 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.099977 B = 3703.908011 C = 4228.532803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.617 5.617 3 C -0.246 4.246 4 H 0.074 0.926 5 C -0.061 4.061 6 N -0.943 5.943 7 Si 0.961 3.039 8 H -0.280 1.280 9 H -0.296 1.296 10 H -0.276 1.276 11 C 0.152 3.848 12 C -0.091 4.091 13 C -0.103 4.103 14 C -0.073 4.073 15 C -0.131 4.131 16 C -0.174 4.174 17 C -0.169 4.169 18 C -0.076 4.076 19 C -0.101 4.101 20 H 0.002 0.998 21 H 0.012 0.988 22 H 0.027 0.973 23 H 0.245 0.755 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.583 -11.756 -9.905 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.340 5.340 3 C -0.376 4.376 4 H 0.092 0.908 5 C -0.255 4.255 6 N -0.591 5.591 7 Si 0.790 3.210 8 H -0.206 1.206 9 H -0.222 1.222 10 H -0.202 1.202 11 C 0.027 3.973 12 C -0.112 4.112 13 C -0.141 4.141 14 C -0.110 4.110 15 C -0.131 4.131 16 C -0.211 4.211 17 C -0.206 4.206 18 C -0.113 4.113 19 C -0.138 4.138 20 H 0.020 0.980 21 H 0.031 0.969 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.484 -11.634 -9.823 16.966 hybrid contribution -0.014 1.385 0.174 1.396 sum 7.470 -10.249 -9.649 15.935 Atomic orbital electron populations 1.20487 0.83222 0.95615 0.97366 1.44122 1.01851 1.01852 1.86219 1.19507 0.97802 0.86347 1.33974 0.90801 1.25741 0.98893 1.01636 0.99214 1.70237 1.21181 1.27177 1.40491 0.85423 0.77678 0.80087 0.77830 1.20635 1.22227 1.20167 1.20983 0.94961 0.86553 0.94852 1.21542 0.97751 0.94879 0.97062 1.21469 1.00442 0.95286 0.96915 1.21083 0.99240 0.96444 0.94219 1.21495 0.94482 0.95996 1.01121 1.23034 0.93015 1.03222 1.01833 1.23043 1.03770 1.02616 0.91183 1.21091 1.00051 0.93911 0.96266 1.21440 0.98369 0.99079 0.94952 0.97975 0.96867 0.95415 0.94546 0.93938 0.94482 0.93385 0.92196 0.91446 0.90494 0.91923 0.89470 0.88102 0.87711 0.88880 0.92668 0.92329 0.93175 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 8.98 127.77 1.15 10.30 16 2 N -0.62 -31.60 2.79 -726.93 -2.03 -33.63 16 3 C -0.25 -13.64 8.13 84.04 0.68 -12.96 16 4 H 0.07 3.97 6.70 -2.91 -0.02 3.95 16 5 C -0.06 -3.48 5.08 84.86 0.43 -3.05 16 6 N -0.94 -57.45 10.72 21.65 0.23 -57.22 16 7 Si 0.96 46.18 29.58 68.60 2.03 48.21 16 8 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 C 0.15 6.29 5.15 86.38 0.44 6.74 16 12 C -0.09 -3.15 2.31 -10.83 -0.02 -3.17 16 13 C -0.10 -2.73 5.21 30.64 0.16 -2.58 16 14 C -0.07 -1.65 5.67 30.70 0.17 -1.47 16 15 C -0.13 -3.12 1.97 -52.19 -0.10 -3.22 16 16 C -0.17 -3.64 9.93 30.55 0.30 -3.33 16 17 C -0.17 -3.28 9.99 30.54 0.31 -2.98 16 18 C -0.08 -2.20 5.67 30.70 0.17 -2.02 16 19 C -0.10 -3.57 4.53 30.64 0.14 -3.43 16 20 H 0.00 0.11 7.36 -2.39 -0.02 0.09 16 21 H 0.01 0.71 7.31 -2.38 -0.02 0.69 16 22 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 23 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 25 H 0.04 1.56 8.04 -2.38 -0.02 1.55 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 37 H 0.05 2.15 5.80 -2.39 -0.01 2.14 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.13 294.25 5.06 -57.08 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.99 Total: 6.74 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 3.83 Total: -21.18 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.80 Total: -90.85 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -62.13 5.06 -57.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696207182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.661 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds