Wall clock time and date at job start Mon Mar 30 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 120.00383 * 2 1 4 4 H 1.07994 * 120.00662 * 160.92050 * 3 2 1 5 5 C 1.38818 * 119.99610 * 340.64447 * 3 2 1 6 6 N 1.31625 * 119.99980 * 347.47706 * 5 3 2 7 7 Si 1.86804 * 119.99861 * 167.48118 * 5 3 2 8 8 H 1.48494 * 109.46938 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46919 * 119.99948 * 7 5 3 10 10 H 1.48496 * 109.46693 * 239.99756 * 7 5 3 11 11 C 1.46501 * 119.99913 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47257 * 270.00620 * 11 2 1 13 13 H 1.08993 * 109.47639 * 54.99663 * 12 11 2 14 14 C 1.52944 * 109.47089 * 294.98789 * 12 11 2 15 15 C 1.52944 * 109.82625 * 177.02508 * 14 12 11 16 16 C 1.53181 * 109.45191 * 62.97979 * 15 14 12 17 17 C 1.53158 * 108.88177 * 303.44016 * 16 15 14 18 18 C 1.52838 * 117.67970 * 268.50410 * 17 16 15 19 19 C 1.52808 * 117.74581 * 199.62309 * 17 16 15 20 20 C 1.53154 * 115.01221 * 53.93661 * 17 16 15 21 21 H 1.09000 * 109.46837 * 84.87265 * 1 2 3 22 22 H 1.08999 * 109.47387 * 204.87696 * 1 2 3 23 23 H 1.09005 * 109.47139 * 324.87925 * 1 2 3 24 24 H 0.96995 * 119.99877 * 179.97438 * 6 5 3 25 25 H 1.09003 * 109.47186 * 30.00219 * 11 2 1 26 26 H 1.08994 * 109.47410 * 150.00008 * 11 2 1 27 27 H 1.09002 * 109.41956 * 297.13135 * 14 12 11 28 28 H 1.08995 * 109.41620 * 56.98791 * 14 12 11 29 29 H 1.08995 * 109.47750 * 182.97404 * 15 14 12 30 30 H 1.08996 * 109.46961 * 302.98869 * 15 14 12 31 31 H 1.08997 * 109.57000 * 63.25635 * 16 15 14 32 32 H 1.08992 * 109.57047 * 183.62249 * 16 15 14 33 33 H 1.09002 * 117.51058 * 359.72699 * 18 17 16 34 34 H 1.09006 * 117.50506 * 144.78296 * 18 17 16 35 35 H 1.08998 * 117.49787 * 215.10692 * 19 17 16 36 36 H 1.08993 * 117.50514 * 0.15443 * 19 17 16 37 37 H 1.08997 * 109.57497 * 186.24512 * 20 17 16 38 38 H 1.08996 * 109.56479 * 65.87973 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1852 1.2116 0.3057 5 6 1.5145 2.3541 -0.3985 6 7 0.3478 2.2948 -1.0049 7 14 2.3156 4.0101 -0.0740 8 1 3.6139 3.8051 0.6169 9 1 2.5455 4.7098 -1.3634 10 1 1.4236 4.8319 0.7829 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 1 1.5061 -1.7541 1.9823 14 6 3.3820 -0.7060 2.1266 15 6 3.5832 -1.0988 3.5910 16 6 4.2741 -2.4641 3.6626 17 6 3.4343 -3.4856 2.8899 18 6 2.3809 -4.2731 3.6684 19 6 3.6595 -4.9664 3.1926 20 6 3.1069 -3.0948 1.4457 21 1 -0.3633 0.0918 -1.0236 22 1 -0.3634 -0.9323 0.4323 23 1 -0.3634 0.8406 0.5912 24 1 -0.0962 3.1111 -1.2830 25 1 1.6084 -2.0286 -0.5130 26 1 3.1499 -1.1387 -0.5133 27 1 4.3459 -0.6999 1.6176 28 1 2.9400 0.2891 2.0771 29 1 4.2033 -0.3514 4.0859 30 1 2.6150 -1.1550 4.0884 31 1 5.2662 -2.3951 3.2167 32 1 4.3605 -2.7754 4.7035 33 1 2.2860 -4.0690 4.7349 34 1 1.4529 -4.5191 3.1522 35 1 3.5726 -5.6685 2.3634 36 1 4.4057 -5.2183 3.9461 37 1 2.4196 -3.8241 1.0169 38 1 4.0246 -3.0660 0.8583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696226239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:43 Heat of formation + Delta-G solvation = 9.556635 kcal Electronic energy + Delta-G solvation = -16038.753037 eV Core-core repulsion = 13688.054289 eV Total energy + Delta-G solvation = -2350.698748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38334 -37.76994 -35.44445 -33.42715 -31.78178 -28.48195 -27.70636 -27.16059 -23.54225 -23.31926 -22.69844 -20.86979 -19.53106 -18.56397 -16.96991 -16.19450 -16.05783 -15.59666 -15.30117 -14.82508 -14.51857 -14.47258 -13.93041 -13.46040 -13.24083 -12.89713 -12.71905 -12.69032 -12.41253 -12.26528 -12.18877 -12.15322 -11.85697 -11.71821 -11.56980 -11.40737 -10.93690 -10.68397 -10.56790 -10.26783 -8.73150 -7.77631 -5.21616 1.45563 1.46931 1.56943 2.53394 2.95403 3.35239 3.68985 3.82350 3.91288 4.04467 4.11705 4.28929 4.37745 4.50423 4.57902 4.69888 4.79728 4.84874 4.85589 4.88149 4.97871 5.07040 5.07300 5.11037 5.18094 5.21807 5.34160 5.36475 5.41939 5.48013 5.57500 5.66160 5.73021 5.74252 5.77695 6.36681 7.20145 7.93846 8.37128 9.26697 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.041302 B = 0.007329 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.771672 B = 3819.462263 C = 4227.216825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.619 5.619 3 C -0.240 4.240 4 H 0.077 0.923 5 C -0.065 4.065 6 N -0.947 5.947 7 Si 0.963 3.037 8 H -0.265 1.265 9 H -0.294 1.294 10 H -0.294 1.294 11 C 0.152 3.848 12 C -0.087 4.087 13 H 0.046 0.954 14 C -0.106 4.106 15 C -0.111 4.111 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.179 4.179 19 C -0.164 4.164 20 C -0.068 4.068 21 H 0.000 1.000 22 H 0.023 0.977 23 H 0.017 0.983 24 H 0.244 0.756 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 -12.562 9.343 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.342 5.342 3 C -0.370 4.370 4 H 0.095 0.905 5 C -0.258 4.258 6 N -0.595 5.595 7 Si 0.792 3.208 8 H -0.189 1.189 9 H -0.222 1.222 10 H -0.221 1.221 11 C 0.026 3.974 12 C -0.108 4.108 13 H 0.064 0.936 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.110 4.110 17 C -0.130 4.130 18 C -0.216 4.216 19 C -0.201 4.201 20 C -0.106 4.106 21 H 0.018 0.982 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.857 -12.443 9.280 16.970 hybrid contribution -0.170 1.288 -0.223 1.318 sum 6.687 -11.156 9.056 15.849 Atomic orbital electron populations 1.20486 0.83107 0.95510 0.97290 1.44163 1.01941 1.01884 1.86238 1.19610 0.96279 0.85854 1.35271 0.90523 1.25723 0.98485 1.01547 1.00075 1.70275 1.18238 1.26524 1.44498 0.85245 0.78121 0.80503 0.76955 1.18941 1.22155 1.22107 1.20974 0.95064 0.86511 0.94809 1.21532 0.97712 0.94473 0.97058 0.93590 1.21454 0.98398 0.99132 0.95412 1.21479 1.00194 0.97099 0.96075 1.21096 0.97731 0.92977 0.99221 1.21478 1.02526 0.93051 0.95968 1.23028 0.93669 1.04586 1.00289 1.23039 0.99622 0.93940 1.03523 1.21080 1.00001 0.95447 0.94043 0.98187 0.95832 0.96382 0.94619 0.94028 0.94184 0.93337 0.93271 0.91964 0.93103 0.91480 0.90939 0.88598 0.89413 0.88454 0.87821 0.91893 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.38 8.96 127.77 1.15 10.52 16 2 N -0.62 -31.72 2.80 -726.93 -2.04 -33.76 16 3 C -0.24 -13.26 8.10 84.04 0.68 -12.58 16 4 H 0.08 4.10 6.83 -2.91 -0.02 4.08 16 5 C -0.06 -3.72 5.12 84.86 0.43 -3.28 16 6 N -0.95 -57.71 10.47 21.65 0.23 -57.48 16 7 Si 0.96 46.16 29.57 68.60 2.03 48.19 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 9 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 10 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 11 C 0.15 6.28 5.15 86.38 0.44 6.73 16 12 C -0.09 -3.01 2.40 -10.75 -0.03 -3.03 16 13 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 14 C -0.11 -3.73 4.45 30.56 0.14 -3.60 16 15 C -0.11 -3.14 5.93 30.64 0.18 -2.95 16 16 C -0.07 -1.69 5.67 30.71 0.17 -1.51 16 17 C -0.13 -3.05 1.97 -52.19 -0.10 -3.16 16 18 C -0.18 -3.81 9.93 30.55 0.30 -3.50 16 19 C -0.16 -3.10 9.99 30.54 0.31 -2.79 16 20 C -0.07 -1.85 4.96 30.71 0.15 -1.69 16 21 H 0.00 -0.01 7.44 -2.39 -0.02 -0.03 16 22 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 23 H 0.02 0.99 7.07 -2.38 -0.02 0.98 16 24 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 26 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 2.10 5.86 -2.39 -0.01 2.09 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -62.15 294.06 5.04 -57.11 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.99 Total: 6.79 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 3.83 Total: -20.85 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -1.81 Total: -91.24 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -62.15 5.04 -57.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696226239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.668 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds