Wall clock time and date at job start Mon Mar 30 2020 02:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47002 * 2 1 4 4 C 1.52992 * 109.47188 * 240.00177 * 2 1 3 5 5 C 1.50702 * 109.47184 * 175.00181 * 4 2 1 6 6 H 1.07997 * 120.00038 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99884 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00065 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46819 * 90.00300 * 9 7 5 11 11 H 1.48505 * 109.46919 * 210.00175 * 9 7 5 12 12 H 1.48499 * 109.46885 * 330.00114 * 9 7 5 13 13 N 1.46900 * 109.46884 * 119.99584 * 2 1 3 14 14 C 1.46893 * 111.00302 * 275.00263 * 13 2 1 15 15 C 1.53953 * 113.58025 * 155.00521 * 14 13 2 16 16 C 1.52903 * 86.78369 * 139.33775 * 15 14 13 17 17 C 1.52910 * 121.14315 * 209.37282 * 16 15 14 18 18 C 1.53950 * 86.78717 * 209.38472 * 17 16 15 19 19 C 1.52917 * 121.13601 * 100.81371 * 16 15 14 20 20 C 1.52905 * 88.04187 * 335.09639 * 16 15 14 21 21 H 1.09002 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47375 * 300.00272 * 1 2 3 23 23 H 1.08997 * 109.47247 * 60.00019 * 1 2 3 24 24 H 1.09003 * 109.47545 * 294.99661 * 4 2 1 25 25 H 1.09005 * 109.47771 * 54.99776 * 4 2 1 26 26 H 0.97009 * 119.99708 * 179.97438 * 8 7 5 27 27 H 1.00897 * 110.99942 * 38.96262 * 13 2 1 28 28 H 1.08996 * 112.88052 * 23.86005 * 14 13 2 29 29 H 1.08997 * 113.66155 * 24.86438 * 15 14 13 30 30 H 1.09003 * 113.74418 * 253.82134 * 15 14 13 31 31 H 1.09007 * 113.65999 * 323.86104 * 17 16 15 32 32 H 1.09002 * 113.66292 * 94.90614 * 17 16 15 33 33 H 1.09001 * 113.57502 * 270.13001 * 18 17 16 34 34 H 1.08998 * 113.58006 * 139.33297 * 18 17 16 35 35 H 1.09001 * 113.65915 * 265.09556 * 19 16 15 36 36 H 1.08997 * 113.66386 * 36.05279 * 19 16 15 37 37 H 1.09007 * 113.66063 * 139.37650 * 20 16 15 38 38 H 1.08999 * 113.66512 * 270.43076 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1925 -2.3582 8 7 5.5411 -1.0993 -2.4138 9 14 3.3015 -2.1076 -3.6959 10 1 2.9399 -1.1624 -4.7826 11 1 4.1604 -3.1877 -4.2447 12 1 2.0659 -2.7002 -3.1237 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 6 1.9843 -0.4892 3.7084 16 6 3.0659 0.4763 4.1941 17 6 4.0513 0.0727 5.2915 18 6 4.1079 1.5641 5.6690 19 6 2.7111 1.7021 5.0366 20 6 3.5168 0.6198 2.7402 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2617 -2.1370 26 1 6.0255 -1.5061 -3.1493 27 1 1.4496 -1.4979 1.4100 28 1 1.4061 1.0718 2.2492 29 1 2.3068 -1.5301 3.6821 30 1 1.0234 -0.3556 4.2054 31 1 3.6114 -0.5578 6.0642 32 1 4.9947 -0.3182 4.9102 33 1 4.8828 2.1187 5.1398 34 1 4.1190 1.7416 6.7443 35 1 2.5837 2.6130 4.4516 36 1 1.8934 1.5302 5.7365 37 1 3.7799 1.6405 2.4625 38 1 4.2700 -0.1094 2.4417 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697715065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:36 Heat of formation + Delta-G solvation = 29.919994 kcal Electronic energy + Delta-G solvation = -15599.325845 eV Core-core repulsion = 13249.510118 eV Total energy + Delta-G solvation = -2349.815727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20083 -36.68898 -34.06911 -32.17929 -29.08918 -27.60107 -25.68388 -25.49342 -23.48974 -22.46209 -20.15995 -19.61627 -17.67695 -16.51915 -15.56729 -15.33430 -15.10782 -14.44506 -13.76477 -13.41704 -13.16530 -12.59787 -12.40907 -12.27652 -12.00603 -11.79276 -11.71575 -11.67587 -11.28845 -10.83384 -10.62845 -10.56312 -10.36208 -9.98988 -9.83023 -9.77018 -9.57141 -9.36191 -8.96500 -8.36869 -7.54514 -5.85373 -3.78519 3.39485 3.47066 3.50537 4.55747 4.58381 4.59718 4.76626 4.87086 4.95322 5.13353 5.27193 5.49933 5.57112 5.60743 5.69674 5.72141 5.75371 5.84042 5.90956 5.93089 5.97827 6.05810 6.17934 6.22802 6.35009 6.40269 6.50352 6.53321 6.73927 6.78068 6.92575 7.20955 7.41752 7.91351 8.00818 8.18300 8.79105 9.27018 9.78163 11.28836 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035436 B = 0.006578 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.970765 B = 4255.655593 C = 4789.296287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.097 3.903 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.485 4.485 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.651 5.651 14 C 0.067 3.933 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.127 4.127 18 C -0.139 4.139 19 C -0.119 4.119 20 C -0.096 4.096 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.258 0.742 27 H 0.330 0.670 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 3.363 13.908 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.013 4.013 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.524 4.524 6 H 0.095 0.905 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.280 5.280 14 C -0.043 4.043 15 C -0.168 4.168 16 C -0.107 4.107 17 C -0.165 4.165 18 C -0.176 4.176 19 C -0.156 4.156 20 C -0.134 4.134 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.046 3.386 13.622 15.706 hybrid contribution -1.374 -0.436 -0.632 1.574 sum -8.420 2.950 12.989 15.759 Atomic orbital electron populations 1.22613 0.99603 1.01134 1.00780 1.21598 0.89544 0.98255 0.91866 0.91316 1.19603 0.97837 0.95344 0.91431 1.21053 0.89535 1.33453 1.08342 0.90470 1.25019 0.94686 0.96387 0.97906 1.69922 1.06419 1.46458 1.32326 0.86875 0.80201 0.80005 0.82658 1.20717 1.21706 1.19338 1.60597 1.57048 1.08173 1.02221 1.22897 0.96946 0.95275 0.89206 1.23062 0.97906 0.99322 0.96531 1.22345 0.97181 0.96498 0.94673 1.22724 0.99596 0.96112 0.98055 1.22795 0.97568 0.97288 0.99966 1.22644 0.97059 0.97492 0.98387 1.22768 0.97904 1.01654 0.91078 0.93103 0.94104 0.92613 0.96673 0.97150 0.93178 0.85134 0.92126 0.89422 0.92335 0.90522 0.91289 0.90230 0.92006 0.91600 0.90417 0.92215 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.15 37.16 0.34 -2.58 16 2 C 0.10 1.92 2.38 -67.72 -0.16 1.76 16 3 H 0.07 1.43 7.84 -51.93 -0.41 1.03 16 4 C 0.00 -0.11 3.72 -27.89 -0.10 -0.21 16 5 C -0.49 -14.00 9.39 -34.44 -0.32 -14.32 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 9 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 13 N -0.65 -12.10 6.02 -98.72 -0.59 -12.69 16 14 C 0.07 1.06 3.84 -66.73 -0.26 0.80 16 15 C -0.13 -1.73 7.41 -26.28 -0.19 -1.93 16 16 C -0.11 -1.38 1.11 -154.71 -0.17 -1.55 16 17 C -0.13 -1.50 7.84 -26.28 -0.21 -1.70 16 18 C -0.14 -1.49 8.08 -25.75 -0.21 -1.69 16 19 C -0.12 -1.33 7.84 -26.28 -0.21 -1.53 16 20 C -0.10 -1.55 7.64 -26.28 -0.20 -1.75 16 21 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 22 H 0.04 0.58 7.74 -51.93 -0.40 0.18 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 25 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.33 5.65 8.29 -39.29 -0.33 5.32 16 28 H 0.06 0.94 7.49 -51.93 -0.39 0.55 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -30.59 302.20 -8.67 -39.27 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.95 Total: 2.33 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -1.79 Total: -23.06 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.18 Total: -40.73 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.59 -8.67 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697715065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.187 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds