Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47394 * 240.00486 * 2 1 3 5 5 C 1.50696 * 109.47508 * 175.00113 * 4 2 1 6 6 H 1.08001 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99990 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47422 * 120.00134 * 9 7 5 12 12 H 1.48504 * 109.47258 * 239.99908 * 9 7 5 13 13 N 1.46899 * 109.47426 * 120.00114 * 2 1 3 14 14 C 1.46905 * 110.99912 * 275.00320 * 13 2 1 15 15 C 1.52999 * 109.46789 * 179.97438 * 14 13 2 16 16 H 1.08999 * 110.67251 * 308.22552 * 15 14 13 17 17 C 1.54894 * 110.75262 * 184.99680 * 15 14 13 18 18 C 1.54264 * 104.19660 * 203.74028 * 17 15 14 19 19 H 1.09002 * 117.41204 * 163.59007 * 18 17 15 20 20 C 1.53002 * 118.19779 * 318.22320 * 18 17 15 21 21 C 1.53873 * 106.59802 * 23.61256 * 18 17 15 22 22 H 1.08998 * 121.33338 * 137.49992 * 21 18 17 23 23 C 1.54269 * 106.59751 * 359.97438 * 21 18 17 24 24 H 1.09000 * 109.46795 * 60.00189 * 1 2 3 25 25 H 1.09002 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47126 * 300.00072 * 1 2 3 27 27 H 1.09005 * 109.46748 * 294.99692 * 4 2 1 28 28 H 1.08998 * 109.47267 * 54.99380 * 4 2 1 29 29 H 0.96993 * 120.00312 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00006 * 38.94999 * 13 2 1 31 31 H 1.09002 * 109.47166 * 59.99653 * 14 13 2 32 32 H 1.09003 * 109.46983 * 299.99748 * 14 13 2 33 33 H 1.09004 * 110.48237 * 85.06614 * 17 15 14 34 34 H 1.08998 * 110.60004 * 322.47520 * 17 15 14 35 35 H 1.09004 * 117.45604 * 202.15086 * 20 18 17 36 36 H 1.08994 * 117.46305 * 346.94721 * 20 18 17 37 37 H 1.08997 * 110.48676 * 217.71034 * 23 21 18 38 38 H 1.09004 * 110.59604 * 95.12707 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1934 -2.3578 8 7 3.5766 -1.8384 -3.2991 9 14 6.0920 -1.0610 -2.4369 10 1 6.5837 -0.2907 -1.2663 11 1 6.6864 -2.4218 -2.4184 12 1 6.4862 -0.3657 -3.6885 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5951 -0.5332 3.5744 16 1 2.0176 -1.4437 3.7346 17 6 2.5550 0.3705 4.8317 18 6 3.6087 -0.2461 5.7747 19 1 3.9583 0.3666 6.6056 20 6 3.6721 -1.7705 5.8898 21 6 4.5935 -1.0241 4.8844 22 1 5.6692 -0.9774 5.0539 23 6 4.1035 -0.8537 3.4316 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2457 -4.0341 30 1 1.4496 -1.4979 1.4100 31 1 1.0871 0.6163 2.5525 32 1 2.7589 1.0462 2.1182 33 1 1.5672 0.3403 5.2918 34 1 2.8247 1.3952 4.5763 35 1 4.1278 -2.1882 6.7876 36 1 2.8401 -2.3408 5.4768 37 1 4.2463 -1.7769 2.8701 38 1 4.6239 -0.0283 2.9457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697799379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = -11.973176 kcal Electronic energy + Delta-G solvation = -15494.152422 eV Core-core repulsion = 13142.520071 eV Total energy + Delta-G solvation = -2351.632351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54764 -38.13844 -34.99224 -33.55407 -30.59166 -29.13940 -28.97460 -25.96511 -24.85522 -22.97551 -21.47556 -20.47943 -20.05490 -18.36894 -16.98878 -16.49617 -16.43490 -16.00063 -15.34938 -14.67105 -14.38855 -14.16241 -13.93143 -13.60566 -13.26966 -13.19049 -13.12101 -12.76830 -12.57488 -12.36018 -12.15939 -11.95152 -11.80186 -11.65104 -11.49633 -11.06948 -11.02544 -10.86135 -10.48509 -10.36926 -8.93136 -8.09095 -6.13359 1.40000 1.41132 1.54038 2.47494 2.81904 3.22701 3.40332 3.61382 3.80834 3.98201 4.11963 4.25203 4.33250 4.44359 4.57703 4.58152 4.60856 4.64993 4.79974 4.82384 4.89911 5.00013 5.02072 5.10276 5.14729 5.23758 5.28791 5.31671 5.40749 5.43548 5.51206 5.54741 5.71074 5.91488 6.36227 6.53411 6.77934 7.01007 7.52032 9.03412 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.007290 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.209359 B = 3840.016383 C = 4722.243041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.056 0.944 4 C 0.037 3.963 5 C -0.494 4.494 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.680 5.680 14 C 0.075 3.925 15 C -0.086 4.086 16 H 0.075 0.925 17 C -0.086 4.086 18 C -0.161 4.161 19 H 0.120 0.880 20 C -0.149 4.149 21 C -0.186 4.186 22 H 0.109 0.891 23 C -0.080 4.080 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.064 0.936 27 H -0.010 1.010 28 H -0.009 1.009 29 H 0.258 0.742 30 H 0.335 0.665 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 3.535 18.180 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 H 0.074 0.926 4 C -0.001 4.001 5 C -0.532 4.532 6 H 0.073 0.927 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.310 5.310 14 C -0.054 4.054 15 C -0.104 4.104 16 H 0.093 0.907 17 C -0.124 4.124 18 C -0.178 4.178 19 H 0.138 0.862 20 C -0.186 4.186 21 C -0.204 4.204 22 H 0.128 0.872 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.067 0.933 30 H 0.153 0.847 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.936 3.559 17.861 18.315 hybrid contribution 0.099 -0.099 -0.550 0.568 sum -1.837 3.460 17.311 17.749 Atomic orbital electron populations 1.22402 0.96782 1.01711 1.01849 1.21442 0.92026 0.96719 0.90920 0.92611 1.19008 0.95126 0.94173 0.91753 1.21496 0.93398 1.31985 1.06326 0.92710 1.25862 1.02849 0.95796 0.95849 1.70098 1.36958 1.38203 1.13180 0.85538 0.80769 0.77660 0.77887 1.19065 1.20929 1.20691 1.60352 1.58097 1.09444 1.03155 1.21914 0.98780 0.94996 0.89736 1.22042 0.95983 0.98568 0.93853 0.90680 1.21925 0.98774 0.98589 0.93133 1.23217 0.99982 0.94031 1.00619 0.86165 1.23343 1.01352 0.93754 1.00129 1.23588 0.96959 1.07759 0.92087 0.87247 1.21752 0.95347 1.00598 0.94105 0.92640 0.92886 0.91674 0.99162 0.99108 0.93315 0.84745 0.94701 0.92691 0.90397 0.90771 0.86878 0.89299 0.93288 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 9.16 71.98 0.66 -4.87 16 2 C 0.10 4.03 2.53 44.91 0.11 4.14 16 3 H 0.06 2.34 7.80 -2.39 -0.02 2.32 16 4 C 0.04 1.96 4.65 29.85 0.14 2.10 16 5 C -0.49 -28.70 8.84 25.60 0.23 -28.48 16 6 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 9 Si 0.96 46.52 29.54 68.60 2.03 48.55 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.68 -25.12 5.89 -491.56 -2.89 -28.01 16 14 C 0.07 2.22 4.92 86.30 0.42 2.64 16 15 C -0.09 -2.20 2.58 -9.51 -0.02 -2.22 16 16 H 0.07 1.90 7.40 -2.39 -0.02 1.88 16 17 C -0.09 -1.77 6.21 31.67 0.20 -1.57 16 18 C -0.16 -3.14 6.97 -10.07 -0.07 -3.21 16 19 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.15 -2.88 9.96 31.44 0.31 -2.57 16 21 C -0.19 -4.36 7.16 -9.22 -0.07 -4.43 16 22 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 23 C -0.08 -2.35 6.15 31.66 0.19 -2.16 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 26 H 0.06 1.78 7.45 -2.39 -0.02 1.76 16 27 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.33 11.58 8.47 -89.69 -0.76 10.82 16 31 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 32 H 0.05 1.77 7.90 -2.39 -0.02 1.75 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.50 8.05 -2.39 -0.02 1.49 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.79 7.24 -2.39 -0.02 1.77 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.79 7.93 -2.39 -0.02 1.77 16 Total: -1.00 -64.81 303.62 2.23 -62.57 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.25 Total: 16.28 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 2.57 Total: -40.64 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -2.61 Total: -86.77 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -64.81 2.23 -62.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697799379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.599 kcal (2) G-P(sol) polarization free energy of solvation -64.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds