Wall clock time and date at job start Mon Mar 30 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.52995 * 109.47336 * 120.00027 * 2 1 3 5 5 C 1.50704 * 109.47061 * 185.00190 * 4 2 1 6 6 H 1.07998 * 119.99924 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99645 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00458 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99757 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47241 * 59.99581 * 9 7 5 11 11 H 1.48500 * 109.47321 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47162 * 299.99898 * 9 7 5 13 13 N 1.46899 * 109.46956 * 240.00295 * 2 1 3 14 14 C 1.46900 * 111.00062 * 84.99954 * 13 2 1 15 15 C 1.53004 * 109.46810 * 180.02562 * 14 13 2 16 16 H 1.08993 * 110.82117 * 51.65771 * 15 14 13 17 17 C 1.55816 * 110.65080 * 287.74846 * 15 14 13 18 18 C 1.54268 * 103.95790 * 203.32196 * 17 15 14 19 19 H 1.09003 * 117.41028 * 164.38415 * 18 17 15 20 20 C 1.52997 * 118.69005 * 320.19470 * 18 17 15 21 21 C 1.53006 * 60.37560 * 93.34712 * 20 18 17 22 22 H 1.09001 * 119.75316 * 111.12453 * 21 20 18 23 23 C 1.54266 * 118.19847 * 266.38216 * 21 20 18 24 24 H 1.09000 * 109.47327 * 299.99541 * 1 2 3 25 25 H 1.09002 * 109.47526 * 60.00313 * 1 2 3 26 26 H 1.09010 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47047 * 305.00142 * 4 2 1 28 28 H 1.08998 * 109.47284 * 65.00336 * 4 2 1 29 29 H 0.97001 * 120.00376 * 179.97438 * 8 7 5 30 30 H 1.00902 * 111.00476 * 321.03992 * 13 2 1 31 31 H 1.08993 * 109.47118 * 60.00088 * 14 13 2 32 32 H 1.08998 * 109.46982 * 299.99581 * 14 13 2 33 33 H 1.09004 * 109.92048 * 85.05238 * 17 15 14 34 34 H 1.09002 * 111.39120 * 322.31792 * 17 15 14 35 35 H 1.08998 * 117.45799 * 345.74823 * 20 18 17 36 36 H 1.09002 * 117.46018 * 200.94169 * 20 18 17 37 37 H 1.09002 * 110.48629 * 159.25025 * 23 21 20 38 38 H 1.08998 * 110.48744 * 281.75929 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0789 -0.0853 0.5395 7 6 4.2305 -1.1934 2.3577 8 7 3.5766 -1.8378 3.2994 9 14 6.0922 -1.0622 2.4360 10 1 6.4856 0.3686 2.4956 11 1 6.5873 -1.7621 3.6485 12 1 6.6839 -1.6881 1.2263 13 7 2.0196 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5949 -0.5331 -3.5745 16 1 2.0203 -1.4451 -3.7358 17 6 4.1160 -0.8410 -3.4348 18 6 4.5941 -1.0228 -4.8902 19 1 5.6681 -0.9897 -5.0735 20 6 3.6896 -1.7696 -5.8726 21 6 3.6067 -0.2447 -5.7776 22 1 3.9540 0.3687 -6.6090 23 6 2.5548 0.3707 -4.8318 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0278 -0.0005 27 1 1.6054 -0.2617 2.1370 28 1 1.7518 -1.7715 1.2055 29 1 4.0611 -2.2451 4.0344 30 1 1.4496 -1.4979 -1.4101 31 1 2.7588 1.0462 -2.1182 32 1 1.0870 0.6164 -2.5525 33 1 4.2581 -1.7616 -2.8688 34 1 4.6465 -0.0161 -2.9591 35 1 2.8625 -2.3448 -5.4565 36 1 4.1555 -2.1932 -6.7623 37 1 2.8257 1.3946 -4.5744 38 1 1.5664 0.3424 -5.2905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697799380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:39 Heat of formation + Delta-G solvation = 4.899501 kcal Electronic energy + Delta-G solvation = -15493.818476 eV Core-core repulsion = 13142.917779 eV Total energy + Delta-G solvation = -2350.900697 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60174 -36.61943 -33.15774 -31.94874 -29.16161 -28.00750 -27.18127 -24.70868 -22.90371 -21.83346 -19.89284 -19.50768 -18.90611 -16.20469 -15.86480 -15.28014 -14.62881 -14.40889 -13.84983 -13.47940 -13.08382 -12.88214 -12.39209 -12.06869 -11.79834 -11.72648 -11.48870 -11.26538 -11.09205 -10.70781 -10.67907 -10.54431 -10.38528 -10.22396 -9.99622 -9.97245 -9.42578 -9.19041 -8.92913 -8.20077 -7.46365 -5.82539 -3.79690 3.44157 3.47720 3.51369 3.75337 4.57069 4.60706 4.61723 4.90528 5.00735 5.16961 5.33779 5.54652 5.56415 5.62038 5.65191 5.70841 5.78943 5.84365 5.92479 6.01645 6.05113 6.09803 6.12858 6.19441 6.25391 6.37087 6.51621 6.60675 6.65099 6.68766 7.09003 7.63481 7.75639 8.09736 8.13115 8.25039 8.66547 9.25346 9.81125 11.29694 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.007296 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.548076 B = 3836.936830 C = 4721.245249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.662 5.662 14 C 0.069 3.931 15 C -0.091 4.091 16 H 0.073 0.927 17 C -0.078 4.078 18 C -0.166 4.166 19 H 0.104 0.896 20 C -0.156 4.156 21 C -0.173 4.173 22 H 0.103 0.897 23 C -0.090 4.090 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.257 0.743 30 H 0.329 0.671 31 H 0.068 0.932 32 H 0.016 0.984 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 2.881 -15.937 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.292 5.292 14 C -0.060 4.060 15 C -0.110 4.110 16 H 0.091 0.909 17 C -0.115 4.115 18 C -0.185 4.185 19 H 0.122 0.878 20 C -0.193 4.193 21 C -0.191 4.191 22 H 0.121 0.879 23 C -0.128 4.128 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.940 2.888 -15.591 15.974 hybrid contribution 0.137 0.114 -0.168 0.245 sum -1.803 3.002 -15.759 16.143 Atomic orbital electron populations 1.22556 0.99695 1.01105 1.00497 1.21783 0.89753 0.98104 0.92416 0.91935 1.19106 0.96201 0.95356 0.89743 1.21108 0.91910 1.32699 1.06683 0.92441 1.25002 0.97893 0.96009 0.96086 1.69951 1.35213 1.37075 1.12424 0.86715 0.86571 0.77893 0.77082 1.20626 1.21685 1.20360 1.60519 1.57599 1.08508 1.02525 1.21923 0.98025 0.95772 0.90320 1.22271 0.96936 0.98155 0.93637 0.90894 1.22002 0.94160 1.02701 0.92646 1.23262 0.96434 1.05099 0.93661 0.87808 1.22865 1.02303 0.93537 1.00590 1.23102 1.01358 0.93661 1.01014 0.87853 1.21931 0.97604 0.99044 0.94213 0.92579 0.94501 0.93102 0.96612 0.96563 0.93349 0.85386 0.91385 0.96581 0.90690 0.90659 0.89009 0.88886 0.91026 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.16 37.16 0.34 -2.73 16 2 C 0.09 1.81 2.53 -67.72 -0.17 1.64 16 3 H 0.06 1.31 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 N -0.66 -12.31 5.90 -106.73 -0.63 -12.94 16 14 C 0.07 1.07 4.93 -3.82 -0.02 1.05 16 15 C -0.09 -1.23 2.62 -88.12 -0.23 -1.46 16 16 H 0.07 0.98 7.39 -51.93 -0.38 0.60 16 17 C -0.08 -1.14 6.18 -24.57 -0.15 -1.29 16 18 C -0.17 -2.07 7.04 -89.51 -0.63 -2.70 16 19 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.16 -1.72 9.84 -26.73 -0.26 -1.98 16 21 C -0.17 -1.95 7.06 -89.50 -0.63 -2.58 16 22 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 23 C -0.09 -1.05 6.19 -25.07 -0.16 -1.20 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 26 H 0.05 0.85 8.13 -51.92 -0.42 0.43 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.33 5.77 8.47 -39.29 -0.33 5.44 16 31 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 32 H 0.02 0.23 7.44 -51.93 -0.39 -0.15 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 35 H 0.09 1.03 7.21 -51.93 -0.37 0.66 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -29.88 303.57 -9.64 -39.52 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.86 Total: 1.84 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -2.44 Total: -23.32 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.11 Total: -40.00 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.88 -9.64 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697799380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.418 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds