Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 111.00228 * 2 1 4 4 C 1.53000 * 109.46769 * 66.04241 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00088 * 9 7 5 11 11 H 1.48495 * 109.46891 * 210.00496 * 9 7 5 12 12 H 1.48504 * 109.47189 * 330.00185 * 9 7 5 13 13 C 1.46906 * 111.00173 * 236.04511 * 2 1 3 14 14 C 1.53003 * 109.47132 * 293.95594 * 13 2 1 15 15 H 1.09002 * 115.54523 * 29.41818 * 14 13 2 16 16 C 1.52998 * 117.49737 * 243.74733 * 14 13 2 17 17 C 1.52998 * 117.49720 * 175.08736 * 14 13 2 18 18 H 1.09004 * 117.49710 * 359.97438 * 17 14 13 19 19 C 1.53000 * 117.49484 * 214.98209 * 17 14 13 20 20 C 1.53004 * 117.50140 * 128.74842 * 19 17 14 21 21 C 1.52995 * 117.50555 * 60.08558 * 19 17 14 22 22 H 1.09006 * 109.46785 * 60.00195 * 1 2 3 23 23 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47113 * 300.00366 * 1 2 3 25 25 H 1.09001 * 109.46874 * 306.04522 * 3 2 1 26 26 H 1.08992 * 109.47407 * 186.04539 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00295 * 4 3 2 28 28 H 1.09001 * 109.47194 * 60.00475 * 4 3 2 29 29 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46871 * 53.95458 * 13 2 1 31 31 H 1.09000 * 109.47257 * 173.95495 * 13 2 1 32 32 H 1.09001 * 117.49852 * 359.97438 * 16 14 13 33 33 H 1.08993 * 117.50050 * 144.99983 * 16 14 13 34 34 H 1.09005 * 115.54514 * 274.41002 * 19 17 14 35 35 H 1.09002 * 117.49288 * 359.97438 * 20 19 17 36 36 H 1.08998 * 117.50125 * 145.01474 * 20 19 17 37 37 H 1.08997 * 117.50469 * 214.97701 * 21 19 17 38 38 H 1.09003 * 117.49327 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1710 3.4645 1.3180 6 1 2.7184 3.8327 0.4630 7 6 1.9658 4.2817 2.4094 8 7 2.4362 5.5098 2.4090 9 14 1.0183 3.6449 3.8880 10 1 1.9619 3.0176 4.8479 11 1 0.3165 4.7739 4.5498 12 1 0.0232 2.6370 3.4417 13 6 1.9955 -0.7660 -1.1376 14 6 1.6315 -2.2427 -0.9704 15 1 0.7099 -2.4405 -0.4231 16 6 2.7806 -3.2389 -0.8027 17 6 1.9920 -3.1930 -2.1139 18 1 2.4882 -2.7661 -2.9856 19 6 1.0315 -4.3487 -2.4014 20 6 0.5567 -4.5305 -3.8445 21 6 -0.4069 -3.9937 -2.7831 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.5612 1.9273 -0.8309 26 1 3.0797 1.3444 -0.1082 27 1 0.5472 2.0844 1.4265 28 1 2.0658 1.5015 2.1492 29 1 2.2921 6.0846 3.1769 30 1 1.5612 -0.3872 -2.0628 31 1 3.0798 -0.6611 -1.1756 32 1 3.7958 -2.8423 -0.8120 33 1 2.6149 -4.0922 -0.1452 34 1 1.1867 -5.2482 -1.8055 35 1 0.9284 -3.8265 -4.5890 36 1 0.3991 -5.5495 -4.1979 37 1 -1.1980 -4.6597 -2.4389 38 1 -0.6690 -2.9367 -2.8291 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698235615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = 43.102511 kcal Electronic energy + Delta-G solvation = -14992.963478 eV Core-core repulsion = 12643.719388 eV Total energy + Delta-G solvation = -2349.244090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00168 -37.09670 -35.10168 -32.86994 -30.27007 -27.31179 -25.87992 -23.74753 -22.75101 -22.49001 -20.43194 -19.88834 -19.65787 -16.86375 -15.99214 -15.43369 -14.95831 -14.72544 -14.34670 -13.79971 -13.23344 -13.15603 -12.82412 -12.48966 -11.96554 -11.77985 -11.57255 -11.39260 -11.30638 -11.03182 -10.97332 -10.85002 -10.67466 -10.10229 -9.91552 -9.75569 -9.71656 -9.38329 -9.16986 -8.50376 -7.79194 -6.02139 -4.00038 3.34887 3.41423 3.43753 3.46612 3.89574 4.27024 4.48592 4.61269 4.70390 4.77823 4.94303 5.05679 5.25143 5.32491 5.36216 5.44712 5.51692 5.64103 5.69359 5.72709 5.82740 5.86152 5.92994 5.94799 6.03075 6.14449 6.18993 6.32076 6.37368 6.43696 6.80266 7.19690 7.35326 7.62805 7.67379 7.88430 8.55704 9.02006 9.60577 11.11303 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055218 B = 0.004625 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.956336 B = 6052.835618 C = 6149.923436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.071 3.929 4 C -0.007 4.007 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.084 3.916 14 C -0.131 4.131 15 H 0.108 0.892 16 C -0.166 4.166 17 C -0.130 4.130 18 H 0.103 0.897 19 C -0.121 4.121 20 C -0.179 4.179 21 C -0.178 4.178 22 H 0.019 0.981 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.263 0.737 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.834 -19.365 -9.290 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.056 4.056 4 C -0.045 4.045 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.044 4.044 14 C -0.149 4.149 15 H 0.126 0.874 16 C -0.202 4.202 17 C -0.148 4.148 18 H 0.121 0.879 19 C -0.139 4.139 20 C -0.216 4.216 21 C -0.215 4.215 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.663 -19.414 -8.754 21.609 hybrid contribution -0.711 0.214 0.074 0.747 sum -4.375 -19.201 -8.679 21.520 Atomic orbital electron populations 1.22415 0.88302 1.00724 1.01004 1.62049 1.07476 1.15744 1.41441 1.22140 0.99025 0.85015 0.99429 1.19571 0.96563 0.95530 0.92857 1.21100 1.35499 0.95583 1.03766 0.91174 1.25000 0.95321 0.94679 0.98419 1.69918 1.46414 1.07192 1.30872 0.86737 0.80776 0.78511 0.83020 1.20218 1.21515 1.18991 1.21667 0.99786 0.90951 0.92006 1.22438 0.99871 0.91598 1.01026 0.87381 1.23105 0.96769 1.01788 0.98584 1.21878 1.01419 0.98453 0.93061 0.87940 1.21737 0.95166 0.98838 0.98128 1.22977 1.04438 1.02080 0.92097 1.22969 0.92773 1.02098 1.03615 0.96207 0.92247 0.90892 0.95635 0.91608 0.96589 0.96141 0.92757 0.95134 0.90945 0.88731 0.89055 0.87902 0.88845 0.89032 0.89031 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.15 60.07 0.55 0.94 16 2 N -0.54 -9.64 4.76 -242.91 -1.16 -10.80 16 3 C 0.07 1.47 4.90 -3.82 -0.02 1.46 16 4 C -0.01 -0.18 3.97 -27.88 -0.11 -0.30 16 5 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 6 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 9 Si 0.88 22.20 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.08 1.23 5.24 -3.82 -0.02 1.21 16 14 C -0.13 -1.62 5.32 -90.62 -0.48 -2.10 16 15 H 0.11 1.40 6.35 -51.93 -0.33 1.07 16 16 C -0.17 -1.83 9.90 -26.69 -0.26 -2.09 16 17 C -0.13 -1.36 5.59 -90.58 -0.51 -1.87 16 18 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.12 -1.13 5.86 -90.62 -0.53 -1.66 16 20 C -0.18 -1.50 10.26 -26.69 -0.27 -1.77 16 21 C -0.18 -1.60 10.18 -26.70 -0.27 -1.87 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.82 6.22 -51.93 -0.32 0.50 16 24 H 0.07 1.28 6.47 -51.93 -0.34 0.94 16 25 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 27 H 0.02 0.39 5.61 -51.93 -0.29 0.10 16 28 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 1.05 7.67 -51.93 -0.40 0.65 16 32 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -30.48 305.97 -9.51 -39.99 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.71 Total: -2.18 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.36 Total: -21.65 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.38 Total: -38.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.48 -9.51 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698235615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.092 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds