Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.52995 * 109.47049 * 190.00178 * 14 12 2 16 16 H 1.08998 * 115.55130 * 29.41403 * 15 14 12 17 17 C 1.53007 * 117.49594 * 243.74654 * 15 14 12 18 18 C 1.53001 * 117.49779 * 175.09035 * 15 14 12 19 19 H 1.08997 * 117.50296 * 359.97438 * 18 15 14 20 20 C 1.53009 * 117.49680 * 214.99901 * 18 15 14 21 21 C 1.53003 * 117.49674 * 128.74313 * 20 18 15 22 22 C 1.53002 * 117.49786 * 60.08844 * 20 18 15 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 28 28 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 29 29 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 30 30 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 31 31 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 32 32 H 1.08994 * 117.49742 * 0.02562 * 17 15 14 33 33 H 1.09004 * 117.49308 * 145.02240 * 17 15 14 34 34 H 1.08999 * 115.54979 * 274.41456 * 20 18 15 35 35 H 1.08995 * 117.49803 * 0.02562 * 21 20 18 36 36 H 1.08997 * 117.49662 * 145.02223 * 21 20 18 37 37 H 1.08999 * 117.49451 * 214.98136 * 22 20 18 38 38 H 1.09001 * 117.50038 * 359.97128 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3788 -0.5660 3.6186 16 1 3.3455 -1.0200 3.4009 17 6 1.5256 -1.2113 4.7125 18 6 2.2142 0.1312 4.9705 19 1 1.5860 1.0213 5.0046 20 6 3.4192 0.1377 5.9134 21 6 3.8549 1.4848 6.4936 22 6 4.7025 0.8054 5.4151 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 1.8764 -2.6150 0.3648 28 1 1.9053 -2.5654 2.1441 29 1 0.4385 -2.0742 1.2640 30 1 1.9297 1.0872 2.3124 31 1 0.5722 -0.0344 2.5726 32 1 0.4441 -1.2050 4.5766 33 1 1.9312 -2.0896 5.2147 34 1 3.5235 -0.7415 6.5492 35 1 3.2829 2.3662 6.2039 36 1 4.2462 1.4917 7.5109 37 1 5.6510 0.3656 5.7233 38 1 4.6885 1.2396 4.4154 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698242960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = 48.680178 kcal Electronic energy + Delta-G solvation = -15471.616277 eV Core-core repulsion = 13122.614053 eV Total energy + Delta-G solvation = -2349.002224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77013 -36.96319 -34.93234 -32.50104 -28.83448 -27.01066 -25.12845 -24.15012 -23.12129 -22.38454 -20.65456 -19.55894 -19.01458 -16.13662 -15.76953 -15.08628 -15.01860 -14.24813 -13.75796 -13.66371 -13.08523 -12.77345 -12.40770 -11.69421 -11.61786 -11.35001 -11.22706 -11.10399 -10.90096 -10.84234 -10.69740 -10.54262 -10.52814 -10.36249 -9.98264 -9.91123 -9.47027 -9.20081 -8.81829 -8.35398 -7.07416 -5.97823 -4.01221 3.33374 3.39450 3.42970 3.67717 4.11028 4.43573 4.63050 4.90598 4.94145 5.08139 5.25353 5.34027 5.37840 5.47390 5.62847 5.65157 5.84747 5.91530 6.00690 6.13047 6.16413 6.25390 6.26856 6.32752 6.36687 6.53549 6.71203 6.73240 6.87445 6.95741 7.17212 7.55117 7.76270 7.88178 8.17858 8.44065 8.66360 9.05068 9.63696 11.09441 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043733 B = 0.005577 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.093531 B = 5019.028129 C = 5133.421752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.533 5.533 13 C 0.037 3.963 14 C 0.084 3.916 15 C -0.122 4.122 16 H 0.110 0.890 17 C -0.178 4.178 18 C -0.128 4.128 19 H 0.101 0.899 20 C -0.120 4.120 21 C -0.181 4.181 22 C -0.176 4.176 23 H 0.030 0.970 24 H 0.006 0.994 25 H 0.087 0.913 26 H 0.259 0.741 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -1.373 14.296 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.257 5.257 13 C -0.112 4.112 14 C -0.045 4.045 15 C -0.141 4.141 16 H 0.128 0.872 17 C -0.215 4.215 18 C -0.147 4.147 19 H 0.119 0.881 20 C -0.138 4.138 21 C -0.218 4.218 22 C -0.212 4.212 23 H 0.049 0.951 24 H 0.025 0.975 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.821 -1.273 14.110 14.446 hybrid contribution -0.691 -0.371 -0.790 1.113 sum 2.131 -1.644 13.320 13.589 Atomic orbital electron populations 1.22395 1.00988 0.99298 1.00405 1.19307 0.89679 0.94535 0.86143 0.94438 1.21135 1.30396 1.12434 0.89706 0.91947 1.24935 0.95261 0.95167 0.98995 1.69892 1.37135 1.23170 1.23314 0.86524 0.78498 0.79993 0.82528 1.20705 1.19966 1.21411 1.62312 1.59434 1.01996 1.01937 1.22198 0.96947 0.91263 1.00754 1.21601 0.95721 0.97623 0.89522 1.22499 1.00864 1.01987 0.88716 0.87208 1.23139 0.98763 0.95532 1.04029 1.21832 0.98382 0.96529 0.97932 0.88093 1.21710 0.94759 0.96235 1.01078 1.22970 1.04403 0.96253 0.98157 1.22983 0.94579 1.04183 0.99504 0.95111 0.97500 0.89424 0.93070 0.91199 0.93828 0.96643 0.91504 0.95632 0.89228 0.89317 0.88136 0.88867 0.89227 0.89155 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.28 37.16 0.31 -3.92 16 2 C 0.21 5.36 2.34 -68.87 -0.16 5.19 16 3 H 0.04 1.06 8.03 -51.92 -0.42 0.64 16 4 C -0.50 -13.77 7.94 -34.44 -0.27 -14.04 16 5 H 0.06 1.73 6.75 -52.49 -0.35 1.37 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 N -0.53 -11.67 4.74 -236.29 -1.12 -12.79 16 13 C 0.04 0.75 8.72 60.06 0.52 1.27 16 14 C 0.08 1.56 4.68 -3.83 -0.02 1.54 16 15 C -0.12 -1.87 4.38 -90.62 -0.40 -2.27 16 16 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 17 C -0.18 -2.33 9.90 -26.69 -0.26 -2.60 16 18 C -0.13 -1.66 5.59 -90.58 -0.51 -2.17 16 19 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.12 -1.37 5.87 -90.61 -0.53 -1.90 16 21 C -0.18 -1.86 10.25 -26.69 -0.27 -2.13 16 22 C -0.18 -1.97 10.18 -26.69 -0.27 -2.25 16 23 H 0.03 0.73 6.38 -51.93 -0.33 0.40 16 24 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.07 1.50 6.53 -51.93 -0.34 1.16 16 28 H 0.04 0.77 7.16 -51.93 -0.37 0.39 16 29 H 0.02 0.31 6.28 -51.93 -0.33 -0.02 16 30 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 31 H 0.03 0.48 6.67 -51.93 -0.35 0.14 16 32 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -27.99 300.47 -9.45 -37.44 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.50 Total: 1.22 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -1.96 Total: -21.77 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.49 Total: -37.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.99 -9.45 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698242960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.116 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds