Wall clock time and date at job start Mon Mar 30 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47552 * 2 1 4 4 C 1.50704 * 109.47325 * 239.99663 * 2 1 3 5 5 H 1.07998 * 120.00085 * 240.00363 * 4 2 1 6 6 C 1.37872 * 119.99833 * 59.99566 * 4 2 1 7 7 N 1.31513 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99944 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46871 * 60.00702 * 8 6 4 10 10 H 1.48504 * 109.47187 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47223 * 300.00669 * 8 6 4 12 12 N 1.46898 * 109.47223 * 119.99947 * 2 1 3 13 13 C 1.46901 * 111.00443 * 176.04521 * 12 2 1 14 14 C 1.46906 * 110.99820 * 299.99834 * 12 2 1 15 15 C 1.52996 * 109.47022 * 169.99926 * 14 12 2 16 16 H 1.09000 * 115.55336 * 330.66675 * 15 14 12 17 17 C 1.53004 * 117.49804 * 116.38238 * 15 14 12 18 18 C 1.53000 * 60.00405 * 107.48667 * 17 15 14 19 19 H 1.08994 * 117.49753 * 252.51832 * 18 17 15 20 20 C 1.53001 * 117.49845 * 107.48398 * 18 17 15 21 21 C 1.53001 * 117.49487 * 180.02562 * 20 18 17 22 22 C 1.53004 * 60.00195 * 252.51725 * 21 20 18 23 23 H 1.09007 * 109.46908 * 60.00057 * 1 2 3 24 24 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47057 * 300.00273 * 1 2 3 26 26 H 0.97010 * 119.99890 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 28 28 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 29 29 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 30 30 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 31 31 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 32 32 H 1.09004 * 117.49402 * 214.97650 * 17 15 14 33 33 H 1.09000 * 117.49960 * 359.97438 * 17 15 14 34 34 H 1.08990 * 115.55367 * 325.71153 * 20 18 17 35 35 H 1.08995 * 117.50144 * 359.97438 * 21 20 18 36 36 H 1.09005 * 117.49707 * 145.03059 * 21 20 18 37 37 H 1.09001 * 117.49801 * 252.51876 * 22 21 20 38 38 H 1.08996 * 117.52399 * 107.48195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8299 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8268 -0.4203 -5.2204 11 1 3.8063 -1.1213 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9042 3.6341 16 1 1.8853 -1.9773 3.4446 17 6 2.8378 -0.3492 4.6743 18 6 1.3447 -0.4382 4.9964 19 1 0.7803 0.4937 5.0282 20 6 0.8989 -1.5144 5.9884 21 6 -0.5942 -1.6037 6.3100 22 6 0.3805 -1.0483 7.3504 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7093 1.1615 -3.4845 27 1 3.8163 -1.3721 2.0501 28 1 3.9192 0.2043 1.2300 29 1 3.8069 -1.2916 0.2719 30 1 2.0518 0.9346 2.5280 31 1 0.4722 0.1325 2.3563 32 1 3.5024 -1.0573 5.1692 33 1 3.2559 0.6412 4.4943 34 1 1.4636 -2.4461 5.9565 35 1 -1.2589 -0.8956 5.8152 36 1 -1.0119 -2.5943 6.4900 37 1 0.6041 -1.6736 8.2148 38 1 0.3574 0.0248 7.5399 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698242962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:54 Heat of formation + Delta-G solvation = 48.729548 kcal Electronic energy + Delta-G solvation = -15369.402931 eV Core-core repulsion = 13020.402847 eV Total energy + Delta-G solvation = -2349.000083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70530 -36.85930 -34.98059 -32.54452 -29.13277 -27.39171 -24.71354 -23.79746 -23.10192 -22.34532 -20.44317 -19.92055 -19.18917 -16.23946 -15.76009 -15.25212 -14.92497 -14.12469 -13.89340 -13.58328 -12.87610 -12.76772 -12.35635 -11.89267 -11.63634 -11.37322 -11.33149 -11.09955 -11.00209 -10.91088 -10.75489 -10.66139 -10.40519 -10.10053 -9.98379 -9.87133 -9.40786 -9.21981 -8.76850 -8.38456 -7.10862 -5.97926 -4.02278 3.34214 3.38301 3.41332 3.58051 4.28796 4.41184 4.51212 4.87062 4.93098 5.12098 5.23009 5.31809 5.33784 5.43069 5.57544 5.60104 5.83637 5.85020 6.02073 6.07262 6.14304 6.21024 6.26984 6.32447 6.37968 6.52771 6.69425 6.85647 6.90742 7.09969 7.20928 7.57257 7.78503 7.86388 8.26495 8.37584 8.66377 9.04249 9.62517 11.08936 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052130 B = 0.005334 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.993513 B = 5248.051298 C = 5465.451728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.039 3.961 14 C 0.080 3.920 15 C -0.122 4.122 16 H 0.109 0.891 17 C -0.178 4.178 18 C -0.127 4.127 19 H 0.100 0.900 20 C -0.115 4.115 21 C -0.177 4.177 22 C -0.182 4.182 23 H 0.084 0.916 24 H 0.034 0.966 25 H 0.008 0.992 26 H 0.260 0.740 27 H 0.044 0.956 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -2.417 14.749 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.105 3.895 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.109 4.109 14 C -0.048 4.048 15 C -0.140 4.140 16 H 0.127 0.873 17 C -0.215 4.215 18 C -0.145 4.145 19 H 0.118 0.882 20 C -0.134 4.134 21 C -0.214 4.214 22 C -0.219 4.219 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.068 -2.767 14.576 14.837 hybrid contribution 0.638 0.438 -0.813 1.123 sum 0.707 -2.329 13.763 13.977 Atomic orbital electron populations 1.21852 0.97792 0.99654 0.99790 1.19233 0.92302 0.91938 0.86004 0.98615 1.21131 1.30975 1.12242 0.89796 0.91900 1.24932 0.95239 0.95094 0.98997 1.69889 1.36986 1.23055 1.23445 0.86585 0.79055 0.79777 0.82121 1.20217 1.21383 1.20371 1.62095 1.09285 1.52608 1.02031 1.22194 0.88814 0.98595 1.01309 1.21698 1.00608 0.93276 0.89259 1.22462 1.01801 1.00765 0.89021 0.87269 1.23090 0.91894 1.02362 1.04162 1.21797 0.96754 0.98940 0.97041 0.88226 1.21697 0.96583 0.99235 0.95849 1.22923 0.92763 1.02509 1.03250 1.22929 1.04920 1.01310 0.92773 0.89721 0.94654 0.97320 0.92981 0.93705 0.97440 0.90748 0.96202 0.90506 0.89290 0.89202 0.88014 0.88695 0.88967 0.89139 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.76 37.15 0.33 -2.99 16 2 C 0.21 5.46 2.06 -68.87 -0.14 5.32 16 3 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -13.96 7.88 -34.44 -0.27 -14.23 16 5 H 0.06 1.73 6.40 -52.49 -0.34 1.40 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.54 -11.86 4.62 -236.28 -1.09 -12.96 16 13 C 0.04 0.80 9.10 60.07 0.55 1.35 16 14 C 0.08 1.51 5.05 -3.82 -0.02 1.49 16 15 C -0.12 -1.89 4.52 -90.61 -0.41 -2.30 16 16 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 17 C -0.18 -2.36 9.90 -26.73 -0.26 -2.62 16 18 C -0.13 -1.66 5.57 -90.61 -0.50 -2.16 16 19 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.12 -1.33 5.85 -90.62 -0.53 -1.86 16 21 C -0.18 -1.88 10.25 -26.73 -0.27 -2.15 16 22 C -0.18 -1.80 10.25 -26.73 -0.27 -2.07 16 23 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.04 0.79 7.28 -51.93 -0.38 0.41 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 1.61 6.10 -51.93 -0.32 1.29 16 30 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 31 H 0.08 1.49 5.83 -51.93 -0.30 1.18 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -28.31 302.93 -9.41 -37.72 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.58 Total: 0.04 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.91 Total: -20.69 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.46 Total: -38.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.31 -9.41 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698242962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.451 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds