Wall clock time and date at job start Mon Mar 30 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47552 * 2 1 4 4 C 1.50704 * 109.47325 * 239.99663 * 2 1 3 5 5 H 1.07998 * 120.00085 * 240.00363 * 4 2 1 6 6 C 1.37872 * 119.99833 * 59.99566 * 4 2 1 7 7 N 1.31513 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99944 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46871 * 60.00702 * 8 6 4 10 10 H 1.48504 * 109.47187 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47223 * 300.00669 * 8 6 4 12 12 N 1.46898 * 109.47223 * 119.99947 * 2 1 3 13 13 C 1.46901 * 111.00443 * 176.04521 * 12 2 1 14 14 C 1.46906 * 110.99820 * 299.99834 * 12 2 1 15 15 C 1.52996 * 109.47022 * 169.99926 * 14 12 2 16 16 H 1.09000 * 115.55336 * 330.66675 * 15 14 12 17 17 C 1.53004 * 117.49804 * 116.38238 * 15 14 12 18 18 C 1.53000 * 60.00405 * 107.48667 * 17 15 14 19 19 H 1.08994 * 117.49753 * 252.51832 * 18 17 15 20 20 C 1.53001 * 117.49845 * 107.48398 * 18 17 15 21 21 C 1.53001 * 117.49487 * 180.02562 * 20 18 17 22 22 C 1.53004 * 60.00195 * 252.51725 * 21 20 18 23 23 H 1.09007 * 109.46908 * 60.00057 * 1 2 3 24 24 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47057 * 300.00273 * 1 2 3 26 26 H 0.97010 * 119.99890 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 28 28 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 29 29 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 30 30 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 31 31 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 32 32 H 1.09004 * 117.49402 * 214.97650 * 17 15 14 33 33 H 1.09000 * 117.49960 * 359.97438 * 17 15 14 34 34 H 1.08990 * 115.55367 * 325.71153 * 20 18 17 35 35 H 1.08995 * 117.50144 * 359.97438 * 21 20 18 36 36 H 1.09005 * 117.49707 * 145.03059 * 21 20 18 37 37 H 1.09001 * 117.49801 * 252.51876 * 22 21 20 38 38 H 1.08996 * 117.52399 * 107.48195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8299 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8268 -0.4203 -5.2204 11 1 3.8063 -1.1213 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9042 3.6341 16 1 1.8853 -1.9773 3.4446 17 6 2.8378 -0.3492 4.6743 18 6 1.3447 -0.4382 4.9964 19 1 0.7803 0.4937 5.0282 20 6 0.8989 -1.5144 5.9884 21 6 -0.5942 -1.6037 6.3100 22 6 0.3805 -1.0483 7.3504 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7093 1.1615 -3.4845 27 1 3.8163 -1.3721 2.0501 28 1 3.9192 0.2043 1.2300 29 1 3.8069 -1.2916 0.2719 30 1 2.0518 0.9346 2.5280 31 1 0.4722 0.1325 2.3563 32 1 3.5024 -1.0573 5.1692 33 1 3.2559 0.6412 4.4943 34 1 1.4636 -2.4461 5.9565 35 1 -1.2589 -0.8956 5.8152 36 1 -1.0119 -2.5943 6.4900 37 1 0.6041 -1.6736 8.2148 38 1 0.3574 0.0248 7.5399 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698242962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:54 Heat of formation + Delta-G solvation = 33.658147 kcal Electronic energy + Delta-G solvation = -15370.056476 eV Core-core repulsion = 13020.402847 eV Total energy + Delta-G solvation = -2349.653628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.89383 -38.34629 -36.20597 -34.52201 -31.11347 -29.03852 -26.70817 -25.26052 -24.33781 -23.15299 -21.91914 -21.03204 -20.81128 -18.33419 -17.12469 -16.64578 -16.20411 -15.91105 -15.38781 -15.03758 -14.50242 -14.17976 -13.93386 -13.53521 -13.00333 -12.92249 -12.82462 -12.61587 -12.42127 -12.30870 -12.14234 -12.07370 -12.00122 -11.94684 -11.73953 -11.34129 -10.95206 -10.56978 -10.50428 -10.16340 -8.93313 -8.10846 -6.23014 1.43002 1.45131 1.52652 2.42551 2.62171 3.16845 3.28997 3.31819 3.69287 3.95391 4.04978 4.19888 4.34510 4.39590 4.44202 4.50681 4.60220 4.69079 4.74964 4.84103 4.86486 4.94186 5.02304 5.03847 5.07797 5.11944 5.26551 5.26840 5.31712 5.34597 5.44682 5.51496 5.72726 5.80138 6.25723 6.41121 6.76417 6.91753 7.46205 8.95206 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052130 B = 0.005334 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.993513 B = 5248.051298 C = 5465.451728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.214 3.786 3 H -0.041 1.041 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.542 5.542 13 C 0.045 3.955 14 C 0.085 3.915 15 C -0.139 4.139 16 H 0.103 0.897 17 C -0.165 4.165 18 C -0.111 4.111 19 H 0.098 0.902 20 C -0.131 4.131 21 C -0.183 4.183 22 C -0.167 4.167 23 H 0.060 0.940 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.075 0.925 28 H 0.002 0.998 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -3.366 16.116 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H -0.024 1.024 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.267 5.267 13 C -0.103 4.103 14 C -0.044 4.044 15 C -0.158 4.158 16 H 0.121 0.879 17 C -0.202 4.202 18 C -0.130 4.130 19 H 0.117 0.883 20 C -0.149 4.149 21 C -0.219 4.219 22 C -0.204 4.204 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.021 0.979 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.541 -3.721 15.965 16.402 hybrid contribution 0.482 0.765 -1.174 1.482 sum 1.023 -2.956 14.791 15.118 Atomic orbital electron populations 1.21665 0.97348 0.99232 0.99627 1.19054 0.92671 0.90062 0.87478 1.02361 1.21414 1.31221 1.12357 0.90930 0.92136 1.25741 0.95337 0.95768 1.01980 1.70022 1.37789 1.24229 1.24118 0.85555 0.78725 0.78677 0.78334 1.19628 1.20930 1.19615 1.62056 1.10358 1.52318 1.01940 1.22158 0.87762 0.98577 1.01821 1.21678 0.99763 0.93661 0.89249 1.22195 1.05201 0.99646 0.88752 0.87929 1.23149 0.92257 1.02489 1.02257 1.21823 0.96743 0.99140 0.95272 0.88339 1.21706 0.97365 0.99066 0.96778 1.22999 0.92223 1.03102 1.03626 1.23007 1.03157 1.01848 0.92387 0.92127 0.94989 0.95216 0.92928 0.90651 0.97930 0.92397 0.96724 0.91503 0.87569 0.89200 0.87644 0.89273 0.87969 0.87481 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.76 71.98 0.63 -5.50 16 2 C 0.21 11.34 2.06 44.17 0.09 11.43 16 3 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 4 C -0.52 -29.33 7.88 25.60 0.20 -29.13 16 5 H 0.06 3.37 6.40 -2.91 -0.02 3.35 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.54 -24.14 4.62 -901.46 -4.17 -28.31 16 13 C 0.05 1.83 9.10 127.69 1.16 2.99 16 14 C 0.08 3.17 5.05 86.30 0.44 3.60 16 15 C -0.14 -4.14 4.52 -10.79 -0.05 -4.19 16 16 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 17 C -0.16 -3.98 9.90 30.60 0.30 -3.68 16 18 C -0.11 -2.69 5.57 -10.79 -0.06 -2.75 16 19 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 20 C -0.13 -2.70 5.85 -10.79 -0.06 -2.77 16 21 C -0.18 -3.47 10.25 30.60 0.31 -3.15 16 22 C -0.17 -2.81 10.25 30.60 0.31 -2.49 16 23 H 0.06 3.37 6.07 -2.38 -0.01 3.36 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.03 1.33 6.20 -2.39 -0.01 1.32 16 26 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 27 H 0.07 2.56 7.28 -2.39 -0.02 2.54 16 28 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.06 2.51 6.10 -2.38 -0.01 2.50 16 30 H 0.01 0.56 7.85 -2.39 -0.02 0.54 16 31 H 0.07 2.59 5.83 -2.39 -0.01 2.58 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 2.19 8.03 -2.39 -0.02 2.17 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.50 302.93 2.83 -57.66 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.00 Total: 12.85 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.73 Total: -34.61 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.93 Total: -82.08 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.50 2.83 -57.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698242962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.320 kcal (2) G-P(sol) polarization free energy of solvation -60.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds