Wall clock time and date at job start Mon Mar 30 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47133 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47166 * 120.00332 * 9 7 5 12 12 H 1.48501 * 109.46968 * 239.99912 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 C 1.52998 * 109.47303 * 179.97438 * 14 13 2 16 16 H 1.08996 * 115.55225 * 330.58820 * 15 14 13 17 17 C 1.53002 * 117.49829 * 116.25390 * 15 14 13 18 18 C 1.53004 * 117.49969 * 184.91222 * 15 14 13 19 19 H 1.08989 * 117.50004 * 145.02369 * 18 15 14 20 20 C 1.53002 * 117.49481 * 359.97438 * 18 15 14 21 21 C 1.53008 * 117.49639 * 128.62317 * 20 18 15 22 22 C 1.53005 * 117.49640 * 60.00332 * 20 18 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.00906 * 111.00118 * 38.95572 * 13 2 1 30 30 H 1.09003 * 109.46741 * 300.00007 * 14 13 2 31 31 H 1.09003 * 109.47153 * 59.99606 * 14 13 2 32 32 H 1.08998 * 117.49869 * 214.98235 * 17 15 14 33 33 H 1.09006 * 117.49876 * 359.97264 * 17 15 14 34 34 H 1.08993 * 115.55428 * 274.32807 * 20 18 15 35 35 H 1.09001 * 117.49721 * 359.97438 * 21 20 18 36 36 H 1.08988 * 117.49940 * 145.01864 * 21 20 18 37 37 H 1.08996 * 117.49444 * 214.97140 * 22 20 18 38 38 H 1.08998 * 117.49787 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.5835 -0.2897 -1.2671 11 1 6.6863 -2.4217 -2.4185 12 1 6.4861 -0.3656 -3.6886 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 6 2.5952 -0.5333 3.5744 16 1 2.3617 -1.5976 3.6025 17 6 3.9313 -0.0872 4.1716 18 6 2.6239 0.2192 4.9063 19 1 2.4096 -0.3501 5.8106 20 6 2.1382 1.6701 4.9085 21 6 1.0859 2.0612 5.9481 22 6 0.6946 1.9325 4.4745 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2616 -2.1371 28 1 4.0608 -2.2443 -4.0351 29 1 1.4496 -1.4980 1.4100 30 1 2.7589 1.0462 2.1181 31 1 1.0871 0.6162 2.5525 32 1 4.5767 -0.8579 4.5929 33 1 4.4454 0.7446 3.6896 34 1 2.8868 2.4168 4.6442 35 1 0.7393 1.2848 6.6301 36 1 1.1422 3.0654 6.3680 37 1 0.4936 2.8521 3.9251 38 1 0.0911 1.0715 4.1871 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698946084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:31 Heat of formation + Delta-G solvation = 34.480320 kcal Electronic energy + Delta-G solvation = -15325.230915 eV Core-core repulsion = 12975.612939 eV Total energy + Delta-G solvation = -2349.617976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.95493 -36.49891 -35.01156 -32.54555 -30.24984 -27.19483 -25.18118 -23.61934 -22.83931 -22.31040 -21.14391 -19.78412 -18.89465 -16.16538 -15.68257 -15.57353 -14.58527 -14.44360 -14.30572 -13.62153 -13.37984 -12.67913 -12.33777 -11.99471 -11.75017 -11.52782 -11.48564 -11.37502 -11.23124 -10.81805 -10.69255 -10.68752 -10.49651 -10.36497 -9.99948 -9.68477 -9.38862 -9.16944 -8.89066 -8.20103 -7.41556 -5.82205 -3.79152 3.42001 3.49075 3.54863 3.61284 4.01390 4.54580 4.61934 4.71667 4.89552 4.93817 5.15818 5.29583 5.39194 5.52505 5.55496 5.58232 5.70320 5.79265 5.81498 5.92343 6.00751 6.02339 6.04022 6.07707 6.14179 6.19846 6.29368 6.51793 6.56445 6.69055 7.09811 7.64874 7.77022 8.11313 8.14367 8.26581 8.67443 9.26536 9.81860 11.30105 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031126 B = 0.006307 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.360799 B = 4438.599807 C = 5052.910435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.664 5.664 14 C 0.090 3.910 15 C -0.131 4.131 16 H 0.103 0.897 17 C -0.165 4.165 18 C -0.132 4.132 19 H 0.101 0.899 20 C -0.118 4.118 21 C -0.182 4.182 22 C -0.174 4.174 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.256 0.744 29 H 0.329 0.671 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 5.588 16.079 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.293 5.293 14 C -0.039 4.039 15 C -0.149 4.149 16 H 0.121 0.879 17 C -0.202 4.202 18 C -0.150 4.150 19 H 0.119 0.881 20 C -0.136 4.136 21 C -0.219 4.219 22 C -0.211 4.211 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.368 5.588 15.751 17.274 hybrid contribution 0.124 0.039 0.087 0.156 sum -4.244 5.627 15.837 17.335 Atomic orbital electron populations 1.22557 0.99667 1.01118 1.00515 1.21768 0.89756 0.98085 0.92355 0.91963 1.19123 0.96243 0.95384 0.89766 1.21195 0.91938 1.32491 1.06628 0.92352 1.25006 0.97936 0.96015 0.96093 1.69977 1.35015 1.37268 1.12431 0.86585 0.86607 0.77535 0.77536 1.19873 1.21330 1.21478 1.60504 1.57646 1.08584 1.02592 1.21557 0.98507 0.95007 0.88817 1.22354 1.00638 0.99190 0.92760 0.87909 1.23055 0.90431 1.03319 1.03355 1.21853 1.02602 0.94455 0.96118 0.88136 1.21674 0.92115 0.95783 1.04017 1.22972 1.04168 1.02272 0.92439 1.22970 0.98107 1.03074 0.96974 0.94447 0.93092 0.92581 0.96540 0.96564 0.93474 0.85388 0.91572 0.95291 0.89090 0.88728 0.87879 0.89044 0.89128 0.89002 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.16 37.16 0.34 -2.74 16 2 C 0.09 1.85 2.53 -67.71 -0.17 1.68 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.92 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.48 -13.95 8.84 -34.44 -0.30 -14.25 16 6 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.66 -12.64 5.96 -106.73 -0.64 -13.27 16 14 C 0.09 1.43 4.71 -3.83 -0.02 1.41 16 15 C -0.13 -1.82 5.93 -90.62 -0.54 -2.35 16 16 H 0.10 1.43 8.13 -51.93 -0.42 1.00 16 17 C -0.16 -2.15 9.90 -26.69 -0.26 -2.41 16 18 C -0.13 -1.54 5.87 -90.58 -0.53 -2.07 16 19 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.12 -1.30 5.25 -90.61 -0.48 -1.77 16 21 C -0.18 -1.71 10.25 -26.72 -0.27 -1.99 16 22 C -0.17 -1.84 8.44 -26.73 -0.23 -2.07 16 23 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 24 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.33 5.85 8.46 -39.29 -0.33 5.52 16 30 H 0.07 1.13 7.79 -51.93 -0.40 0.73 16 31 H 0.03 0.43 4.92 -51.93 -0.26 0.17 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.76 8.14 -51.94 -0.42 0.34 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.06 7.30 -51.93 -0.38 0.68 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -30.41 308.47 -9.73 -40.15 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.77 Total: 2.68 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.69 Total: -24.53 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.10 Total: -40.46 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.41 -9.73 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698946084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.626 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds