Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47359 * 59.99932 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46855 * 299.99342 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 H 1.09000 * 115.54725 * 330.71848 * 15 14 13 17 17 C 1.52993 * 117.50168 * 116.39252 * 15 14 13 18 18 C 1.52997 * 60.00380 * 107.49338 * 17 15 14 19 19 H 1.08997 * 117.49732 * 252.51811 * 18 17 15 20 20 C 1.52993 * 117.50406 * 107.48910 * 18 17 15 21 21 C 1.52997 * 117.50406 * 179.97438 * 20 18 17 22 22 C 1.52993 * 60.00380 * 252.51090 * 21 20 18 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 27 27 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 28 28 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00476 * 38.95263 * 13 2 1 30 30 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 31 31 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 32 32 H 1.09002 * 117.49879 * 214.98257 * 17 15 14 33 33 H 1.08997 * 117.50086 * 359.97438 * 17 15 14 34 34 H 1.09000 * 115.55035 * 325.71320 * 20 18 17 35 35 H 1.09002 * 117.49724 * 0.02562 * 21 20 18 36 36 H 1.09000 * 117.50175 * 145.02109 * 21 20 18 37 37 H 1.08997 * 117.50106 * 252.51415 * 22 21 20 38 38 H 1.09004 * 117.51714 * 107.47715 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.6839 -1.6884 -1.2273 11 1 6.5872 -1.7615 -3.6489 12 1 6.4855 0.3693 -2.4951 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 1 2.3652 -1.5978 3.6014 17 6 3.9306 -0.0838 4.1727 18 6 2.6227 0.2189 4.9066 19 1 2.2742 1.2517 4.9086 20 6 2.3229 -0.5815 6.1755 21 6 1.0152 -0.2784 6.9096 22 6 2.3500 0.1701 7.5079 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2618 -2.1369 28 1 4.0609 -2.2439 -4.0352 29 1 1.4495 -1.4979 1.4101 30 1 2.7588 1.0462 2.1183 31 1 1.0870 0.6163 2.5525 32 1 4.5776 -0.8533 4.5940 33 1 4.4429 0.7495 3.6919 34 1 2.6717 -1.6142 6.1733 35 1 0.3683 0.4911 6.4884 36 1 0.5030 -1.1119 7.3903 37 1 2.7160 -0.3684 8.3820 38 1 2.5818 1.2348 7.4804 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698946089.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 14.298582 kcal Electronic energy + Delta-G solvation = -14972.882980 eV Core-core repulsion = 12622.389858 eV Total energy + Delta-G solvation = -2350.493122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.71716 -38.11652 -36.28029 -34.65520 -31.84645 -29.12319 -26.48340 -24.91537 -24.37956 -23.16178 -21.87763 -21.19733 -20.78897 -18.36803 -16.79838 -16.66144 -16.25426 -15.91780 -15.70285 -14.86379 -14.46145 -14.25403 -13.93337 -13.57379 -13.22325 -13.09469 -13.00136 -12.58114 -12.42967 -12.37154 -12.23443 -12.08760 -12.01714 -11.86675 -11.51486 -11.14263 -11.11423 -10.67263 -10.47586 -10.20560 -8.95357 -8.08524 -6.13376 1.41615 1.45073 1.52424 2.48500 2.58678 3.21695 3.28642 3.36588 3.75816 3.91496 4.02446 4.16539 4.24502 4.34524 4.39472 4.40975 4.50676 4.56331 4.59551 4.76411 4.81175 4.82700 4.97794 5.00622 5.06089 5.22686 5.25363 5.29119 5.30082 5.34237 5.43723 5.52045 5.69853 5.91139 6.35491 6.51970 6.75785 7.00367 7.52054 9.03581 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.005481 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.142167 B = 5107.621392 C = 5811.862161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 H 0.056 0.944 4 C 0.037 3.963 5 C -0.500 4.500 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.681 5.681 14 C 0.098 3.902 15 C -0.144 4.144 16 H 0.100 0.900 17 C -0.172 4.172 18 C -0.105 4.105 19 H 0.105 0.895 20 C -0.135 4.135 21 C -0.176 4.176 22 C -0.171 4.171 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.056 0.944 26 H -0.010 1.010 27 H -0.008 1.008 28 H 0.259 0.741 29 H 0.336 0.664 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 4.323 19.474 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.075 0.925 4 C 0.000 4.000 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.311 5.311 14 C -0.031 4.031 15 C -0.162 4.162 16 H 0.119 0.881 17 C -0.209 4.209 18 C -0.124 4.124 19 H 0.124 0.876 20 C -0.153 4.153 21 C -0.213 4.213 22 C -0.208 4.208 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.562 4.325 19.156 19.959 hybrid contribution 0.023 -0.134 -0.457 0.477 sum -3.538 4.191 18.699 19.487 Atomic orbital electron populations 1.22405 0.96694 1.01787 1.01888 1.21459 0.92109 0.96763 0.90833 0.92531 1.18998 0.95123 0.94186 0.91703 1.21460 0.93443 1.32443 1.06484 0.92728 1.25873 1.02995 0.95649 0.95732 1.70089 1.37183 1.38038 1.13074 0.85620 0.80490 0.78377 0.77213 1.19797 1.21143 1.19471 1.60345 1.58215 1.09483 1.03098 1.21455 0.98532 0.94458 0.88668 1.22242 1.01753 0.99515 0.92724 0.88147 1.23085 0.90846 1.03451 1.03555 1.21830 1.01007 0.98939 0.90588 0.87646 1.21718 1.02988 0.99204 0.91413 1.22998 0.90723 1.03898 1.03655 1.23008 1.00805 1.01039 0.95975 0.92818 0.91723 0.92503 0.99132 0.98996 0.93261 0.84563 0.92561 0.94676 0.88627 0.89217 0.88091 0.88723 0.88000 0.87823 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.60 9.16 71.98 0.66 -4.94 16 2 C 0.10 4.04 2.53 44.92 0.11 4.16 16 3 H 0.06 2.38 7.80 -2.39 -0.02 2.37 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.50 -29.22 8.84 25.60 0.23 -28.99 16 6 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 9 Si 0.96 46.39 29.54 68.60 2.03 48.41 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.68 -25.73 5.96 -491.56 -2.93 -28.66 16 14 C 0.10 2.99 5.76 86.30 0.50 3.49 16 15 C -0.14 -3.84 5.67 -10.80 -0.06 -3.90 16 16 H 0.10 2.76 8.13 -2.39 -0.02 2.74 16 17 C -0.17 -4.31 9.90 30.59 0.30 -4.01 16 18 C -0.11 -2.28 5.57 -10.80 -0.06 -2.34 16 19 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 20 C -0.14 -2.52 5.85 -10.80 -0.06 -2.59 16 21 C -0.18 -2.79 10.25 30.59 0.31 -2.47 16 22 C -0.17 -2.61 10.25 30.59 0.31 -2.30 16 23 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 24 H 0.06 1.80 7.45 -2.39 -0.02 1.78 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.34 11.86 8.46 -89.70 -0.76 11.10 16 30 H 0.06 1.84 7.79 -2.39 -0.02 1.82 16 31 H 0.04 0.97 7.44 -2.38 -0.02 0.96 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -64.81 314.70 2.47 -62.34 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.24 Total: 18.34 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 2.84 Total: -41.68 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.65 Total: -87.41 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -64.81 2.47 -62.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698946089.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.639 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds