Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47665 * 2 1 4 4 C 1.53004 * 109.47072 * 120.00500 * 2 1 3 5 5 C 1.50695 * 109.47374 * 184.99567 * 4 2 1 6 6 H 1.08011 * 119.99712 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00415 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46682 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47501 * 119.99366 * 9 7 5 12 12 H 1.48498 * 109.47165 * 240.00244 * 9 7 5 13 13 N 1.46905 * 109.46945 * 239.99957 * 2 1 3 14 14 C 1.47476 * 111.00068 * 325.45904 * 13 2 1 15 15 C 1.53513 * 87.93575 * 138.70340 * 14 13 2 16 16 C 1.52997 * 114.16852 * 220.32924 * 15 14 13 17 17 C 1.52995 * 109.47211 * 268.83325 * 16 15 14 18 18 C 1.52995 * 117.50048 * 243.74904 * 17 16 15 19 19 C 1.53007 * 117.49985 * 175.08806 * 17 16 15 20 20 C 1.47483 * 110.99557 * 61.42889 * 13 2 1 21 21 H 1.09001 * 109.46724 * 309.90557 * 1 2 3 22 22 H 1.08999 * 109.47002 * 69.90213 * 1 2 3 23 23 H 1.09003 * 109.47733 * 189.90302 * 1 2 3 24 24 H 1.08998 * 109.46699 * 304.99752 * 4 2 1 25 25 H 1.09005 * 109.46974 * 64.99914 * 4 2 1 26 26 H 0.96996 * 120.00129 * 180.02562 * 8 7 5 27 27 H 1.09007 * 113.47681 * 253.46682 * 14 13 2 28 28 H 1.08993 * 113.47796 * 23.92952 * 14 13 2 29 29 H 1.08993 * 114.34529 * 87.62791 * 15 14 13 30 30 H 1.09005 * 109.47642 * 28.83874 * 16 15 14 31 31 H 1.09002 * 109.46885 * 148.83791 * 16 15 14 32 32 H 1.09005 * 115.54684 * 29.41760 * 17 16 15 33 33 H 1.08995 * 117.50042 * 359.97438 * 18 17 16 34 34 H 1.09006 * 117.50045 * 145.01926 * 18 17 16 35 35 H 1.08996 * 117.49413 * 214.98280 * 19 17 16 36 36 H 1.09000 * 117.49415 * 0.02562 * 19 17 16 37 37 H 1.08996 * 113.47983 * 336.06049 * 20 13 2 38 38 H 1.09000 * 113.47629 * 106.47266 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5418 -0.6152 1.3127 6 1 4.0790 -0.0864 0.5391 7 6 4.2303 -1.1939 2.3576 8 7 3.5764 -1.8391 3.2988 9 14 6.0920 -1.0616 2.4367 10 1 6.5835 -0.2902 1.2668 11 1 6.4862 -0.3664 3.6883 12 1 6.6861 -2.4224 2.4180 13 7 2.0196 -0.6925 -1.1995 14 6 1.1265 -1.8067 -1.5681 15 6 1.2982 -1.3861 -3.0344 16 6 0.0134 -1.4603 -3.8619 17 6 -0.0927 -2.8391 -4.5165 18 6 -0.0592 -2.9000 -6.0449 19 6 -1.3704 -3.1541 -5.2971 20 6 1.5749 -0.0042 -2.4256 21 1 -0.3633 0.6593 0.7883 22 1 -0.3633 0.3531 -0.9651 23 1 -0.3635 -1.0123 0.1767 24 1 1.6053 -0.2619 2.1369 25 1 1.7516 -1.7717 1.2054 26 1 4.0607 -2.2459 4.0342 27 1 1.5436 -2.7892 -1.3465 28 1 0.1081 -1.6875 -1.1984 29 1 2.1577 -1.8344 -3.5327 30 1 -0.8470 -1.2992 -3.2124 31 1 0.0342 -0.6919 -4.6347 32 1 0.3776 -3.6565 -3.9698 33 1 0.0381 -1.9577 -6.5841 34 1 0.4328 -3.7576 -6.5038 35 1 -1.7405 -4.1788 -5.2641 36 1 -2.1352 -2.3788 -5.3445 37 1 0.6761 0.5962 -2.2850 38 1 2.3718 0.5420 -2.9304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699601844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = 52.607680 kcal Electronic energy + Delta-G solvation = -15466.960600 eV Core-core repulsion = 13118.128685 eV Total energy + Delta-G solvation = -2348.831915 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19184 -37.40513 -33.98050 -32.03141 -29.51648 -27.36345 -25.53772 -24.93017 -22.83331 -22.46485 -20.58757 -19.64358 -18.43513 -16.20192 -16.03315 -15.33345 -14.92132 -14.61467 -14.26202 -13.63517 -13.27225 -12.85191 -12.38632 -12.18840 -11.70911 -11.64313 -11.54220 -11.33410 -11.10611 -10.87235 -10.71380 -10.54143 -10.34708 -10.19856 -10.03747 -9.81484 -9.64718 -9.16124 -8.96232 -8.24086 -7.91189 -5.85899 -3.83736 3.40340 3.47349 3.53523 3.72576 4.48308 4.58829 4.66245 4.81224 4.88071 4.96939 5.24574 5.33874 5.50603 5.51573 5.61040 5.67203 5.73418 5.78641 5.80515 5.85907 5.93252 5.99370 6.04087 6.12430 6.13858 6.26696 6.31093 6.46781 6.53456 6.70432 6.95887 7.20951 7.61020 7.83341 8.01302 8.14652 8.61333 9.22122 9.77920 11.26302 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039673 B = 0.005631 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.601329 B = 4970.968968 C = 5210.146196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.069 0.931 4 C 0.035 3.965 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.439 5.439 14 C -0.005 4.005 15 C -0.114 4.114 16 C -0.077 4.077 17 C -0.145 4.145 18 C -0.183 4.183 19 C -0.186 4.186 20 C -0.011 4.011 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.256 0.744 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 0.088 -15.166 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.059 4.059 3 H 0.087 0.913 4 C -0.002 4.002 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.160 5.160 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.163 4.163 18 C -0.220 4.220 19 C -0.223 4.223 20 C -0.140 4.140 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.306 -0.091 -14.826 16.994 hybrid contribution 0.166 0.149 0.152 0.270 sum -8.141 0.059 -14.673 16.780 Atomic orbital electron populations 1.22565 0.99346 1.01675 1.00574 1.22331 0.90575 0.98950 0.94094 0.91310 1.19065 0.96317 0.95188 0.89610 1.21218 0.91875 1.32863 1.06941 0.92228 1.25007 0.98095 0.95836 0.95986 1.69979 1.35127 1.37023 1.12415 0.86563 0.86367 0.77586 0.77639 1.19778 1.21372 1.21276 1.69258 1.41902 1.04736 1.00105 1.24047 0.97751 0.98228 0.93383 1.22732 0.97716 0.97661 0.95213 1.21147 0.97476 0.94258 0.98583 1.22354 1.01127 0.99489 0.93317 1.23028 1.01209 1.02971 0.94793 1.22962 0.91486 1.02295 1.05559 1.23925 0.99537 0.96122 0.94410 0.92573 0.93539 0.92264 0.96466 0.96548 0.93396 0.90563 0.90510 0.88503 0.91686 0.91904 0.87612 0.88991 0.89139 0.89094 0.89056 0.91821 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 7.74 37.16 0.29 -2.86 16 2 C 0.05 1.04 2.38 -67.71 -0.16 0.88 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 4 C 0.04 0.93 4.56 -27.88 -0.13 0.81 16 5 C -0.49 -14.28 8.84 -34.45 -0.30 -14.58 16 6 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.44 -8.71 6.06 -236.58 -1.43 -10.14 16 14 C -0.01 -0.09 6.79 -7.55 -0.05 -0.14 16 15 C -0.11 -1.59 3.95 -90.08 -0.36 -1.94 16 16 C -0.08 -0.86 5.40 -26.73 -0.14 -1.01 16 17 C -0.14 -1.53 5.72 -90.62 -0.52 -2.04 16 18 C -0.18 -1.70 10.18 -26.69 -0.27 -1.97 16 19 C -0.19 -1.71 10.26 -26.69 -0.27 -1.99 16 20 C -0.01 -0.17 7.12 -7.54 -0.05 -0.22 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.69 5.81 -51.93 -0.30 0.39 16 23 H 0.06 1.02 6.47 -51.93 -0.34 0.68 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.23 4.60 -51.93 -0.24 0.99 16 29 H 0.10 1.38 8.12 -51.93 -0.42 0.96 16 30 H 0.06 0.74 7.81 -51.93 -0.41 0.33 16 31 H 0.06 0.65 7.88 -51.93 -0.41 0.25 16 32 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.92 5.84 -51.93 -0.30 0.61 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -30.85 300.44 -9.85 -40.71 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.59 Total: -1.76 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.07 Total: -23.69 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.70 Total: -37.34 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.85 -9.85 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699601844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.314 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds