Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00170 * 2 1 4 4 C 1.53004 * 109.46699 * 125.14087 * 3 2 1 5 5 N 1.46897 * 110.01586 * 305.16883 * 4 3 2 6 6 C 1.46904 * 111.00003 * 175.68253 * 5 4 3 7 7 H 1.09004 * 109.47146 * 343.91559 * 6 5 4 8 8 C 1.53004 * 109.46794 * 103.90706 * 6 5 4 9 9 C 1.50694 * 109.47129 * 223.90806 * 6 5 4 10 10 H 1.07995 * 120.00543 * 0.02562 * 9 6 5 11 11 C 1.37882 * 119.99742 * 179.97438 * 9 6 5 12 12 N 1.31519 * 120.00036 * 0.02562 * 11 9 6 13 13 Si 1.86798 * 120.00000 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47205 * 59.99774 * 13 11 9 15 15 H 1.48499 * 109.46984 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47145 * 300.00093 * 13 11 9 17 17 C 1.53873 * 110.07297 * 66.58722 * 4 3 2 18 18 C 1.54274 * 106.59692 * 119.30686 * 17 4 3 19 19 C 1.54892 * 104.19497 * 23.60886 * 18 17 4 20 20 C 1.54266 * 110.03015 * 183.77698 * 4 3 2 21 21 H 1.07998 * 120.00473 * 179.97438 * 1 2 3 22 22 H 1.08007 * 119.99431 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99561 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47052 * 5.14261 * 3 2 1 25 25 H 1.09001 * 109.46818 * 245.13321 * 3 2 1 26 26 H 1.00898 * 111.00121 * 299.64061 * 5 4 3 27 27 H 1.09003 * 109.47104 * 67.24139 * 8 6 5 28 28 H 1.09003 * 109.46828 * 187.23324 * 8 6 5 29 29 H 1.08997 * 109.47368 * 307.23760 * 8 6 5 30 30 H 0.96993 * 119.99914 * 179.97438 * 12 11 9 31 31 H 1.08993 * 110.03445 * 238.58759 * 17 4 3 32 32 H 1.08995 * 110.03350 * 0.02567 * 17 4 3 33 33 H 1.08995 * 110.48639 * 264.93311 * 18 17 4 34 34 H 1.08995 * 110.59865 * 142.34279 * 18 17 4 35 35 H 1.09000 * 110.75311 * 203.74690 * 19 18 17 36 36 H 1.09001 * 110.75654 * 80.37264 * 19 18 17 37 37 H 1.08998 * 110.48666 * 335.73855 * 20 4 3 38 38 H 1.09007 * 110.48232 * 98.37482 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0376 1.3315 1.1796 5 7 2.3159 1.0761 2.4334 6 6 3.2450 0.9950 3.5685 7 1 4.2607 0.8575 3.1975 8 6 3.1701 2.2885 4.3822 9 6 2.8675 -0.1719 4.4441 10 1 2.0224 -0.7916 4.1834 11 6 3.6019 -0.4491 5.5777 12 7 4.6315 0.3053 5.8950 13 14 3.1345 -1.8959 6.6628 14 1 3.2071 -3.1511 5.8725 15 1 4.0736 -1.9778 7.8102 16 1 1.7509 -1.7088 7.1685 17 6 4.1377 0.2743 0.9799 18 6 5.4782 1.0365 0.9338 19 6 5.1912 2.3559 1.6928 20 6 3.7479 2.6992 1.2479 21 1 -0.5401 -0.9352 -0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3589 2.1314 0.0921 25 1 2.6195 1.4036 -0.9324 26 1 1.6097 1.7787 2.5936 27 1 2.1926 2.3617 4.8590 28 1 3.9475 2.2826 5.1462 29 1 3.3167 3.1427 3.7211 30 1 5.1478 0.1105 6.6926 31 1 4.1362 -0.4282 1.8133 32 1 3.9784 -0.2578 0.0421 33 1 5.7637 1.2441 -0.0974 34 1 6.2598 0.4685 1.4382 35 1 5.8863 3.1373 1.3856 36 1 5.2362 2.1992 2.7706 37 1 3.7540 3.1752 0.2673 38 1 3.2652 3.3435 1.9827 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700640458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -5.072241 kcal Electronic energy + Delta-G solvation = -16457.173692 eV Core-core repulsion = 14105.840588 eV Total energy + Delta-G solvation = -2351.333104 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67833 -36.04326 -35.25327 -33.60765 -31.06584 -29.64868 -28.14105 -27.04260 -25.32299 -22.54175 -21.52474 -20.60630 -19.35691 -18.33717 -17.07876 -16.69549 -16.00968 -15.68991 -15.24125 -14.64286 -14.29358 -14.18676 -13.83753 -13.35895 -13.21522 -12.93108 -12.77939 -12.52984 -12.50226 -12.08964 -11.96039 -11.84632 -11.79171 -11.67765 -11.47854 -11.36686 -11.10520 -10.78198 -10.34086 -9.89814 -8.71284 -8.00968 -6.09152 1.41728 1.42297 1.49952 1.68740 2.46952 3.25844 3.64108 3.76731 3.94699 4.15946 4.29623 4.49424 4.58055 4.65327 4.69064 4.78605 4.83238 4.90575 4.94558 5.03212 5.06931 5.10582 5.17461 5.23342 5.25798 5.28137 5.40028 5.55894 5.66037 5.68324 5.85489 5.92082 5.98275 6.14536 6.43161 6.86477 7.04749 7.08767 7.59685 9.02428 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.010217 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.641007 B = 2739.785609 C = 3299.834269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.071 4.071 4 C 0.117 3.883 5 N -0.673 5.673 6 C 0.209 3.791 7 H 0.039 0.961 8 C -0.150 4.150 9 C -0.506 4.506 10 H 0.044 0.956 11 C 0.009 3.991 12 N -0.921 5.921 13 Si 0.947 3.053 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.131 4.131 20 C -0.146 4.146 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.323 0.677 27 H 0.019 0.981 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.257 0.743 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 3.663 -11.966 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.144 4.144 3 C -0.108 4.108 4 C 0.026 3.974 5 N -0.302 5.302 6 C 0.101 3.899 7 H 0.056 0.944 8 C -0.210 4.210 9 C -0.545 4.545 10 H 0.062 0.938 11 C -0.188 4.188 12 N -0.562 5.562 13 Si 0.774 3.226 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.169 4.169 20 C -0.185 4.185 21 H 0.111 0.889 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.857 2.971 -11.921 12.425 hybrid contribution 0.137 0.024 1.421 1.428 sum -1.720 2.995 -10.500 11.054 Atomic orbital electron populations 1.23722 0.95809 1.01612 1.03507 1.22710 0.95987 0.98138 0.97546 1.20811 0.97519 0.95462 0.97016 1.21616 0.92650 0.92677 0.90481 1.60745 1.15311 1.52054 1.02108 1.19142 0.92469 0.91501 0.86758 0.94354 1.22298 0.99825 0.97962 1.00869 1.21574 1.12733 1.12751 1.07448 0.93754 1.25588 0.95404 0.98851 0.98962 1.70005 1.19630 1.39993 1.26578 0.85787 0.77817 0.80555 0.78444 1.20223 1.21172 1.20203 1.22253 0.93922 0.97805 1.01100 1.22312 0.96719 0.95897 1.00561 1.22619 0.96983 0.97510 0.99755 1.23202 0.95983 0.97845 1.01465 0.88866 0.88344 0.88867 0.91340 0.89263 0.86032 0.96231 0.92929 0.94643 0.93421 0.93724 0.90768 0.89617 0.93448 0.90849 0.93342 0.89644 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.61 14.32 67.78 0.97 -4.64 16 2 C -0.13 -3.62 8.47 25.64 0.22 -3.40 16 3 C -0.07 -1.89 4.57 29.85 0.14 -1.75 16 4 C 0.12 3.86 0.68 4.25 0.00 3.87 16 5 N -0.67 -27.45 5.36 -448.54 -2.40 -29.85 16 6 C 0.21 10.23 1.22 44.17 0.05 10.29 16 7 H 0.04 2.00 3.60 -2.39 -0.01 1.99 16 8 C -0.15 -7.21 7.88 71.98 0.57 -6.64 16 9 C -0.51 -28.43 8.83 25.60 0.23 -28.21 16 10 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 11 C 0.01 0.53 5.30 84.66 0.45 0.98 16 12 N -0.92 -53.51 11.41 21.45 0.24 -53.27 16 13 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 C -0.11 -3.92 5.06 31.32 0.16 -3.76 16 18 C -0.12 -3.67 6.62 31.67 0.21 -3.46 16 19 C -0.13 -4.32 6.19 31.88 0.20 -4.12 16 20 C -0.15 -4.41 5.34 31.67 0.17 -4.24 16 21 H 0.09 2.36 8.06 -2.91 -0.02 2.34 16 22 H 0.10 2.39 7.84 -2.91 -0.02 2.37 16 23 H 0.09 2.86 7.54 -2.91 -0.02 2.83 16 24 H 0.07 1.70 7.79 -2.39 -0.02 1.68 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.32 12.69 8.21 -89.70 -0.74 11.95 16 27 H 0.02 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.05 2.82 6.30 -2.39 -0.02 2.80 16 29 H 0.03 1.47 5.53 -2.39 -0.01 1.46 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.04 1.96 6.60 -2.39 -0.02 1.95 16 32 H 0.07 2.22 7.10 -2.39 -0.02 2.21 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 2.00 5.39 -2.39 -0.01 1.98 16 37 H 0.09 2.09 7.85 -2.39 -0.02 2.07 16 38 H 0.06 1.81 5.79 -2.38 -0.01 1.79 16 Total: -1.00 -59.52 286.52 3.52 -56.00 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.29 Total: 24.93 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.36 Total: -45.09 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.16 Total: -83.12 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -59.52 3.52 -56.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700640458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.932 kcal (2) G-P(sol) polarization free energy of solvation -59.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds