Wall clock time and date at job start Mon Mar 30 2020 02:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47738 * 2 1 4 4 C 1.50703 * 109.47432 * 119.99899 * 2 1 3 5 5 H 1.07999 * 119.99910 * 114.14637 * 4 2 1 6 6 C 1.37880 * 120.00065 * 294.15380 * 4 2 1 7 7 N 1.31510 * 120.00151 * 163.60981 * 6 4 2 8 8 Si 1.86808 * 119.99596 * 343.60527 * 6 4 2 9 9 H 1.48499 * 109.46797 * 269.99822 * 8 6 4 10 10 H 1.48494 * 109.47184 * 30.00140 * 8 6 4 11 11 H 1.48498 * 109.46755 * 150.00188 * 8 6 4 12 12 N 1.46897 * 109.47252 * 239.99592 * 2 1 3 13 13 C 1.46906 * 111.00290 * 183.95167 * 12 2 1 14 14 C 1.46904 * 110.99693 * 60.00453 * 12 2 1 15 15 H 1.08995 * 110.04862 * 305.55378 * 14 12 2 16 16 C 1.54387 * 110.07418 * 67.04257 * 14 12 2 17 17 C 1.54917 * 104.22556 * 142.78141 * 16 14 12 18 18 C 1.54989 * 102.82202 * 322.28185 * 17 16 14 19 19 C 1.53482 * 110.06941 * 184.07202 * 14 12 2 20 20 C 1.52570 * 121.05409 * 96.56367 * 19 14 12 21 21 C 1.52550 * 121.08987 * 24.84957 * 19 14 12 22 22 H 1.08997 * 109.46646 * 293.29958 * 1 2 3 23 23 H 1.08998 * 109.46938 * 53.30359 * 1 2 3 24 24 H 1.08998 * 109.46877 * 173.30260 * 1 2 3 25 25 H 0.97000 * 119.99779 * 354.90447 * 7 6 4 26 26 H 1.09004 * 109.46776 * 67.56230 * 13 12 2 27 27 H 1.09001 * 109.47250 * 187.55968 * 13 12 2 28 28 H 1.09003 * 109.47220 * 307.56116 * 13 12 2 29 29 H 1.08999 * 110.47816 * 261.46890 * 16 14 12 30 30 H 1.09000 * 110.47706 * 23.96029 * 16 14 12 31 31 H 1.09008 * 110.74374 * 80.61122 * 17 16 14 32 32 H 1.08993 * 110.74527 * 203.76608 * 17 16 14 33 33 H 1.09000 * 110.51112 * 156.21540 * 18 17 16 34 34 H 1.08992 * 110.51236 * 278.79209 * 18 17 16 35 35 H 1.09004 * 117.50854 * 356.97519 * 20 19 14 36 36 H 1.09004 * 117.51063 * 142.05263 * 20 19 14 37 37 H 1.08997 * 117.51023 * 217.88582 * 21 19 14 38 38 H 1.08994 * 117.51157 * 2.93288 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5731 -1.6403 1.1342 6 6 1.8016 -0.1732 2.4792 7 7 1.9413 -0.9203 3.5524 8 14 1.2906 1.6158 2.6464 9 1 2.5010 2.4660 2.7776 10 1 0.5252 2.0266 1.4420 11 1 0.4395 1.7767 3.8526 12 7 2.0197 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4210 15 1 0.4629 0.0664 -2.4012 16 6 2.1975 1.3688 -2.5476 17 6 2.4565 1.5319 -4.0662 18 6 2.8831 0.1056 -4.4975 19 6 1.9866 -0.8231 -3.6576 20 6 1.0428 -1.8163 -4.3288 21 6 2.2738 -2.3188 -3.5700 22 1 -0.3632 0.4065 0.9439 23 1 -0.3633 0.6141 -0.8240 24 1 -0.3633 -1.0206 -0.1199 25 1 2.1341 -1.8667 3.4628 26 1 3.7960 -1.4637 -0.3846 27 1 3.8300 -1.1888 -2.1429 28 1 3.9168 0.1930 -1.0242 29 1 1.5148 2.1405 -2.1921 30 1 3.1350 1.4051 -1.9926 31 1 1.5458 1.8351 -4.5828 32 1 3.2577 2.2485 -4.2465 33 1 2.6966 -0.0436 -5.5610 34 1 3.9349 -0.0643 -4.2676 35 1 0.0678 -1.9746 -3.8679 36 1 1.0638 -1.8742 -5.4171 37 1 3.1044 -2.7073 -4.1592 38 1 2.1090 -2.8077 -2.6099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706219566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:13 Heat of formation + Delta-G solvation = 25.731336 kcal Electronic energy + Delta-G solvation = -16498.041068 eV Core-core repulsion = 14148.043707 eV Total energy + Delta-G solvation = -2349.997361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63073 -35.95557 -33.65977 -32.38324 -29.83397 -27.77699 -25.63363 -24.25822 -23.52500 -22.05014 -20.88569 -19.20951 -17.77206 -17.31604 -15.74969 -15.11506 -14.77259 -14.29976 -13.62158 -13.51313 -12.94148 -12.65637 -12.38967 -12.10951 -11.93306 -11.54154 -11.11463 -11.03387 -10.87970 -10.83580 -10.58213 -10.51493 -10.30057 -10.19422 -9.99991 -9.80477 -9.60421 -9.30303 -8.71099 -8.28850 -7.18422 -6.39857 -3.99642 3.42006 3.44121 3.59405 4.05432 4.52837 4.68550 4.85580 5.01290 5.16105 5.24470 5.32287 5.45219 5.53696 5.77365 5.81292 5.89049 5.97986 6.05413 6.10612 6.17818 6.25226 6.28639 6.37074 6.38312 6.44185 6.45931 6.59587 6.66136 6.72640 6.79756 6.92222 7.01113 7.40058 7.84498 8.13395 8.40437 8.51741 9.03758 9.67300 10.99170 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037470 B = 0.009045 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.089558 B = 3095.039710 C = 3355.881212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.188 3.812 3 H -0.007 1.007 4 C -0.586 4.586 5 H 0.063 0.937 6 C 0.031 3.969 7 N -0.910 5.910 8 Si 1.040 2.960 9 H -0.289 1.289 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.519 5.519 13 C 0.041 3.959 14 C 0.110 3.890 15 H 0.080 0.920 16 C -0.159 4.159 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.122 4.122 20 C -0.171 4.171 21 C -0.154 4.154 22 H 0.048 0.952 23 H 0.020 0.980 24 H 0.050 0.950 25 H 0.268 0.732 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.015 0.985 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 2.742 -15.209 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.081 3.919 3 H 0.011 0.989 4 C -0.624 4.624 5 H 0.081 0.919 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.868 3.132 9 H -0.215 1.215 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.241 5.241 13 C -0.107 4.107 14 C 0.000 4.000 15 H 0.098 0.902 16 C -0.198 4.198 17 C -0.156 4.156 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.208 4.208 21 C -0.191 4.191 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.392 3.435 -14.050 14.469 hybrid contribution 0.647 -0.351 -1.054 1.285 sum 0.255 3.085 -15.104 15.418 Atomic orbital electron populations 1.22156 0.98575 1.00045 0.98735 1.19613 0.91526 0.92256 0.88555 0.98908 1.22003 1.39639 1.10347 0.90442 0.91865 1.25639 0.94451 1.05232 0.92084 1.70795 1.44947 1.07873 1.30786 0.84148 0.77102 0.76089 0.75855 1.21548 1.19913 1.21258 1.62181 1.09737 1.51098 1.01085 1.22194 0.88522 0.99463 1.00563 1.21835 0.99141 0.89727 0.89271 0.90182 1.23062 1.01852 0.98952 0.95926 1.22375 1.00567 0.96232 0.96379 1.21884 0.98500 0.94111 0.97948 1.21706 1.01706 0.91059 0.97786 1.22923 0.95424 1.04246 0.98245 1.22822 0.98244 0.95776 1.02305 0.93269 0.96151 0.93127 0.92198 0.91371 0.93075 0.96701 0.92078 0.90842 0.91823 0.92139 0.92247 0.91604 0.89040 0.89674 0.89933 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.07 37.16 0.30 -2.79 16 2 C 0.19 4.49 1.39 -68.87 -0.10 4.39 16 3 H -0.01 -0.16 5.92 -51.93 -0.31 -0.47 16 4 C -0.59 -16.38 8.14 -34.44 -0.28 -16.66 16 5 H 0.06 1.92 6.90 -52.49 -0.36 1.56 16 6 C 0.03 0.88 5.31 -17.82 -0.09 0.79 16 7 N -0.91 -28.07 13.70 55.43 0.76 -27.31 16 8 Si 1.04 25.42 26.20 -169.99 -4.45 20.96 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.18 5.63 56.52 0.32 -5.86 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.52 -10.79 3.91 -227.11 -0.89 -11.67 16 13 C 0.04 0.81 8.00 60.07 0.48 1.29 16 14 C 0.11 1.92 2.58 -66.73 -0.17 1.75 16 15 H 0.08 1.46 6.21 -51.93 -0.32 1.14 16 16 C -0.16 -2.57 5.20 -24.99 -0.13 -2.70 16 17 C -0.12 -1.53 6.91 -24.67 -0.17 -1.70 16 18 C -0.09 -1.12 6.55 -25.16 -0.16 -1.29 16 19 C -0.12 -1.81 1.36 -154.19 -0.21 -2.02 16 20 C -0.17 -2.31 10.24 -26.91 -0.28 -2.58 16 21 C -0.15 -2.25 8.28 -26.92 -0.22 -2.47 16 22 H 0.05 1.14 5.24 -51.93 -0.27 0.86 16 23 H 0.02 0.40 6.66 -51.93 -0.35 0.05 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.27 8.26 8.73 -40.82 -0.36 7.91 16 26 H 0.07 1.50 6.64 -51.93 -0.34 1.15 16 27 H 0.05 0.88 5.69 -51.93 -0.30 0.59 16 28 H 0.01 0.30 6.33 -51.93 -0.33 -0.03 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.29 5.71 -51.93 -0.30 0.99 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.11 1.84 7.58 -51.93 -0.39 1.44 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -29.17 280.55 -7.70 -36.87 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.31 Total: 0.91 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -1.04 Total: -23.98 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.13 Total: -38.98 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.45 Total: 20.96 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.17 -7.70 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.600 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds