Wall clock time and date at job start Mon Mar 30 2020 02:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46666 * 2 1 4 4 C 1.50700 * 109.47584 * 120.00306 * 2 1 3 5 5 H 1.07998 * 119.99555 * 119.99713 * 4 2 1 6 6 C 1.37869 * 120.00115 * 300.00549 * 4 2 1 7 7 N 1.31517 * 120.00152 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00078 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47048 * 59.99655 * 8 6 4 10 10 H 1.48495 * 109.46991 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46943 * 299.99945 * 8 6 4 12 12 N 1.46904 * 109.46994 * 240.01112 * 2 1 3 13 13 C 1.46895 * 110.99781 * 312.35348 * 12 2 1 14 14 C 1.46896 * 111.00109 * 76.30908 * 12 2 1 15 15 H 1.08997 * 110.05435 * 45.72723 * 14 12 2 16 16 C 1.54379 * 110.07167 * 284.17597 * 14 12 2 17 17 C 1.54924 * 104.22129 * 217.20192 * 16 14 12 18 18 C 1.54986 * 102.82143 * 37.73163 * 17 16 14 19 19 C 1.53485 * 110.06776 * 167.20745 * 14 12 2 20 20 C 1.52553 * 121.08564 * 335.18307 * 19 14 12 21 21 C 1.52574 * 121.05765 * 263.46775 * 19 14 12 22 22 H 1.08999 * 109.46983 * 296.77138 * 1 2 3 23 23 H 1.09000 * 109.47688 * 56.77354 * 1 2 3 24 24 H 1.09005 * 109.46897 * 176.77636 * 1 2 3 25 25 H 0.96996 * 120.00191 * 180.02562 * 7 6 4 26 26 H 1.09009 * 109.47211 * 54.13363 * 13 12 2 27 27 H 1.08999 * 109.47522 * 174.13429 * 13 12 2 28 28 H 1.09002 * 109.47372 * 294.13752 * 13 12 2 29 29 H 1.08999 * 110.48504 * 335.89015 * 16 14 12 30 30 H 1.09002 * 110.47995 * 98.51755 * 16 14 12 31 31 H 1.08996 * 110.74545 * 279.39702 * 17 16 14 32 32 H 1.09009 * 110.89772 * 156.13493 * 17 16 14 33 33 H 1.08994 * 110.51337 * 203.78493 * 18 17 16 34 34 H 1.08997 * 110.62848 * 81.12735 * 18 17 16 35 35 H 1.09003 * 117.50668 * 357.02339 * 20 19 14 36 36 H 1.08993 * 117.51097 * 142.10580 * 20 19 14 37 37 H 1.08995 * 117.50763 * 217.93678 * 21 19 14 38 38 H 1.09002 * 117.50551 * 2.98225 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9436 0.8299 2.6035 8 14 2.3216 -1.1207 4.0078 9 1 3.8066 -1.1212 4.0079 10 1 1.8272 -0.4204 5.2203 11 1 1.8262 -2.5206 4.0074 12 7 2.0196 -0.6923 -1.1996 13 6 1.3240 -1.9721 -1.3896 14 6 1.8891 0.1596 -2.3892 15 1 2.2479 1.1652 -2.1700 16 6 0.4153 0.2094 -2.8460 17 6 0.4967 0.2241 -4.3931 18 6 1.6797 -0.7338 -4.6844 19 6 2.6846 -0.4405 -3.5566 20 6 3.8719 -1.3655 -3.3076 21 6 4.0979 0.0385 -3.8747 22 1 -0.3633 0.4629 0.9175 23 1 -0.3634 0.5631 -0.8596 24 1 -0.3633 -1.0261 -0.0578 25 1 0.7095 1.1614 3.4845 26 1 0.2472 -1.8026 -1.3980 27 1 1.6295 -2.4145 -2.3378 28 1 1.5789 -2.6488 -0.5740 29 1 -0.1212 -0.6744 -2.5007 30 1 -0.0668 1.1162 -2.4808 31 1 0.7136 1.2278 -4.7587 32 1 -0.4250 -0.1552 -4.8346 33 1 2.1206 -0.5117 -5.6561 34 1 1.3518 -1.7725 -4.6433 35 1 4.1632 -1.5432 -2.2724 36 1 4.0035 -2.2092 -3.9849 37 1 4.3779 0.1182 -4.9250 38 1 4.5374 0.7847 -3.2128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706219569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:14 Heat of formation + Delta-G solvation = 34.667044 kcal Electronic energy + Delta-G solvation = -16455.870262 eV Core-core repulsion = 14106.260382 eV Total energy + Delta-G solvation = -2349.609879 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54508 -36.04161 -33.52218 -32.33647 -28.66005 -27.43022 -25.96764 -24.91363 -23.69363 -21.96631 -20.25300 -19.48144 -17.80051 -16.07253 -15.54083 -15.03066 -14.67180 -14.33410 -13.91118 -13.41737 -12.90407 -12.44912 -12.22857 -12.01151 -11.45009 -11.22623 -11.00700 -10.96113 -10.85857 -10.64563 -10.53176 -10.46235 -10.18290 -10.07058 -9.88408 -9.82107 -9.59481 -9.21975 -8.73950 -8.30627 -7.01153 -5.94581 -3.98081 3.35602 3.39619 3.42830 4.17571 4.46921 4.81780 4.99379 5.17490 5.27796 5.36069 5.40492 5.56864 5.66647 5.87837 5.92628 5.99989 6.10641 6.16208 6.21969 6.27047 6.35468 6.40894 6.46514 6.49992 6.58180 6.74828 6.77741 6.83299 6.95988 7.01372 7.22149 7.53115 7.80964 7.93269 8.25089 8.48768 8.69783 9.08409 9.66718 11.11945 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039612 B = 0.008238 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.680034 B = 3398.250489 C = 3739.586350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.523 5.523 13 C 0.032 3.968 14 C 0.116 3.884 15 H 0.073 0.927 16 C -0.156 4.156 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.121 4.121 20 C -0.153 4.153 21 C -0.173 4.173 22 H 0.085 0.915 23 H 0.020 0.980 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -2.137 -12.193 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.078 0.922 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.245 5.245 13 C -0.117 4.117 14 C 0.006 3.994 15 H 0.091 0.909 16 C -0.195 4.195 17 C -0.159 4.159 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.190 4.190 21 C -0.210 4.210 22 H 0.103 0.897 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.129 -2.120 -11.944 12.183 hybrid contribution -0.616 -0.196 0.807 1.034 sum 0.513 -2.317 -11.137 11.387 Atomic orbital electron populations 1.22666 1.00847 0.99056 1.01580 1.19281 0.89897 0.94132 0.86178 0.94868 1.21085 1.30131 1.12305 0.89678 0.92190 1.24924 0.95390 0.95206 0.98922 1.69878 1.37277 1.23153 1.23314 0.86611 0.79183 0.79600 0.82265 1.20331 1.21486 1.20463 1.62431 1.56223 1.03608 1.02219 1.22300 0.96410 0.92901 1.00051 1.21719 0.91691 0.96403 0.89550 0.90867 1.23310 0.99217 1.02482 0.94520 1.22437 0.97430 0.99117 0.96951 1.21852 0.95049 0.99162 0.96324 1.21698 0.88905 1.04358 0.97149 1.22783 1.01408 0.92171 1.02609 1.22907 0.98805 0.98795 1.00532 0.89660 0.96147 0.95011 0.93093 0.95426 0.93666 0.91913 0.90371 0.91692 0.91960 0.92343 0.92446 0.91752 0.87215 0.90185 0.89845 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 7.71 37.16 0.29 -4.10 16 2 C 0.21 5.30 2.28 -68.86 -0.16 5.14 16 3 H 0.03 0.93 7.76 -51.92 -0.40 0.52 16 4 C -0.49 -13.60 8.14 -34.44 -0.28 -13.88 16 5 H 0.06 1.67 7.52 -52.49 -0.39 1.27 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.77 11.30 55.43 0.63 -25.15 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.52 -11.07 3.82 -227.12 -0.87 -11.94 16 13 C 0.03 0.62 7.76 60.06 0.47 1.09 16 14 C 0.12 2.12 2.79 -66.74 -0.19 1.94 16 15 H 0.07 1.44 7.79 -51.93 -0.40 1.04 16 16 C -0.16 -2.60 4.24 -24.99 -0.11 -2.71 16 17 C -0.12 -1.65 6.91 -24.67 -0.17 -1.82 16 18 C -0.09 -1.16 6.56 -25.22 -0.17 -1.32 16 19 C -0.12 -1.86 1.44 -154.25 -0.22 -2.09 16 20 C -0.15 -2.31 9.00 -26.91 -0.24 -2.56 16 21 C -0.17 -2.47 10.24 -26.90 -0.28 -2.75 16 22 H 0.08 2.30 5.99 -51.93 -0.31 1.99 16 23 H 0.02 0.43 4.75 -51.93 -0.25 0.19 16 24 H 0.03 0.74 5.99 -51.93 -0.31 0.43 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.03 0.54 3.96 -51.92 -0.21 0.34 16 27 H 0.04 0.78 6.62 -51.93 -0.34 0.44 16 28 H 0.06 1.31 7.46 -51.93 -0.39 0.92 16 29 H 0.08 1.37 4.81 -51.93 -0.25 1.12 16 30 H 0.06 1.12 6.87 -51.93 -0.36 0.77 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.06 0.69 8.11 -51.93 -0.42 0.26 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.92 7.68 -51.93 -0.40 1.52 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -27.70 280.80 -8.28 -35.98 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.11 Total: 1.84 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.15 Total: -21.58 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.24 Total: -37.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.70 -8.28 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.652 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds