Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47267 * 2 1 4 4 C 1.53002 * 109.47293 * 239.99878 * 2 1 3 5 5 N 1.46495 * 109.47000 * 65.00461 * 4 2 1 6 6 C 1.36935 * 120.00509 * 89.99910 * 5 4 2 7 7 H 1.08002 * 120.00219 * 214.60140 * 6 5 4 8 8 C 1.38812 * 119.99664 * 34.60158 * 6 5 4 9 9 N 1.31619 * 119.99992 * 23.53984 * 8 6 5 10 10 Si 1.86802 * 120.00028 * 203.54310 * 8 6 5 11 11 H 1.48503 * 109.46941 * 59.99662 * 10 8 6 12 12 H 1.48493 * 109.47433 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46949 * 300.00191 * 10 8 6 14 14 C 1.46507 * 119.99589 * 269.99610 * 5 4 2 15 15 C 1.52998 * 117.49937 * 194.24469 * 14 5 4 16 16 C 1.53002 * 60.00182 * 252.51786 * 15 14 5 17 17 C 1.53005 * 109.46840 * 119.99891 * 2 1 3 18 18 C 1.53780 * 113.61439 * 277.49764 * 17 2 1 19 19 C 1.53781 * 87.07911 * 220.02051 * 18 17 2 20 20 C 1.53783 * 113.61217 * 179.97438 * 17 2 1 21 21 H 1.09000 * 109.47267 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47224 * 299.99869 * 1 2 3 23 23 H 1.08998 * 109.46969 * 60.00000 * 1 2 3 24 24 H 1.09004 * 109.46951 * 185.00350 * 4 2 1 25 25 H 1.08998 * 109.47307 * 304.99801 * 4 2 1 26 26 H 0.97003 * 119.99783 * 174.89483 * 9 8 6 27 27 H 1.08994 * 115.55375 * 339.95691 * 14 5 4 28 28 H 1.09002 * 117.49779 * 0.02562 * 15 14 5 29 29 H 1.08996 * 117.49835 * 145.02045 * 15 14 5 30 30 H 1.09007 * 117.49259 * 252.51625 * 16 15 14 31 31 H 1.08996 * 117.52094 * 107.48836 * 16 15 14 32 32 H 1.08999 * 112.84764 * 48.80971 * 17 2 1 33 33 H 1.08999 * 113.61467 * 334.56903 * 18 17 2 34 34 H 1.08996 * 113.60928 * 105.47279 * 18 17 2 35 35 H 1.09007 * 113.61585 * 270.88443 * 19 18 17 36 36 H 1.09000 * 113.61588 * 139.98595 * 19 18 17 37 37 H 1.09000 * 113.62161 * 254.53104 * 20 17 2 38 38 H 1.09006 * 113.61340 * 25.43814 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 2.4847 1.0021 -2.9403 7 1 2.0702 1.8912 -3.3920 8 6 3.8612 0.8393 -2.8644 9 7 4.3765 -0.3675 -2.7622 10 14 4.9821 2.3330 -2.9074 11 1 4.6627 3.2247 -1.7636 12 1 6.3972 1.8930 -2.8125 13 1 4.7775 3.0690 -4.1808 14 6 0.3747 -0.2424 -3.1028 15 6 0.1684 0.3241 -4.5090 16 6 -0.5781 0.9347 -3.3212 17 6 2.0399 -0.7213 1.2493 18 6 2.0719 0.1675 2.5038 19 6 3.4106 -0.5053 2.8504 20 6 3.5737 -0.7774 1.3452 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.1264 -0.7995 -1.2055 25 1 1.6055 -1.7198 -1.2951 26 1 5.3389 -0.4873 -2.7838 27 1 -0.0678 -1.2136 -2.8813 28 1 0.9836 0.9032 -4.9429 29 1 -0.4096 -0.2745 -5.2129 30 1 -1.6474 0.7376 -3.2437 31 1 -0.2544 1.9156 -2.9732 32 1 1.5573 -1.6856 1.4079 33 1 2.1620 1.2312 2.2832 34 1 1.2757 -0.0523 3.2150 35 1 3.3026 -1.4103 3.4482 36 1 4.1538 0.1829 3.2530 37 1 3.9897 -1.7597 1.1215 38 1 4.0746 0.0279 0.8078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706770106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = 51.472571 kcal Electronic energy + Delta-G solvation = -16272.830594 eV Core-core repulsion = 13923.949457 eV Total energy + Delta-G solvation = -2348.881137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.74267 -36.95258 -33.83782 -32.22993 -29.69567 -26.01220 -24.98504 -24.72302 -23.14873 -21.34020 -19.88974 -19.63689 -18.80547 -16.20176 -15.45622 -14.92725 -14.63262 -14.20675 -13.84927 -13.16941 -12.75294 -12.50826 -11.98629 -11.95329 -11.64936 -11.31813 -11.15465 -10.85646 -10.76800 -10.65167 -10.54965 -10.20991 -10.11920 -10.01036 -9.84832 -9.40832 -9.35134 -9.33979 -9.10755 -8.36153 -6.42237 -5.77239 -3.28904 3.36077 3.42369 3.45056 4.45693 4.99204 5.08134 5.12345 5.20552 5.32897 5.39757 5.47117 5.90282 5.94366 5.97172 6.11053 6.11384 6.21686 6.22271 6.26083 6.30883 6.33539 6.50765 6.52154 6.59562 6.67512 6.72959 6.76000 6.94506 7.02435 7.08107 7.14375 7.21983 7.42613 7.78660 7.87800 8.54578 9.21603 9.85964 10.41703 11.22390 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.012636 C = 0.008623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.046861 B = 2215.339619 C = 3246.535909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.065 0.935 4 C 0.152 3.848 5 N -0.548 5.548 6 C -0.258 4.258 7 H 0.061 0.939 8 C 0.015 3.985 9 N -0.886 5.886 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.134 3.866 15 C -0.202 4.202 16 C -0.229 4.229 17 C -0.098 4.098 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.130 4.130 21 H 0.037 0.963 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.019 0.981 26 H 0.256 0.744 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 -0.779 6.911 8.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.084 0.916 4 C 0.026 3.974 5 N -0.264 5.264 6 C -0.387 4.387 7 H 0.079 0.921 8 C -0.185 4.185 9 N -0.528 5.528 10 Si 0.724 3.276 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.024 3.976 15 C -0.241 4.241 16 C -0.270 4.270 17 C -0.117 4.117 18 C -0.173 4.173 19 C -0.184 4.184 20 C -0.167 4.167 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.122 0.878 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.343 -0.862 6.992 8.276 hybrid contribution 0.530 0.843 -0.116 1.002 sum -3.813 -0.019 6.876 7.863 Atomic orbital electron populations 1.21811 0.96841 1.00115 1.00930 1.21719 0.94705 1.00325 0.95223 0.91608 1.21067 1.02931 0.90623 0.82801 1.43446 1.15588 1.41581 1.25774 1.18885 0.86602 0.96606 1.36641 0.92139 1.25073 0.97398 0.95764 1.00282 1.69903 1.11338 1.19782 1.51820 0.86497 0.79746 0.83064 0.78328 1.20869 1.21588 1.20804 1.21064 0.89512 0.93022 0.94042 1.23102 1.03034 1.05720 0.92233 1.23367 0.96642 1.01267 1.05761 1.22493 0.95942 0.98405 0.94864 1.22934 0.96839 0.99549 0.98016 1.22860 0.97882 1.00167 0.97537 1.22862 0.96915 1.02122 0.94796 0.94398 0.94909 0.91449 0.87842 0.96226 0.93361 0.89725 0.88444 0.91007 0.91122 0.89798 0.90433 0.90490 0.92568 0.90988 0.92282 0.91995 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.76 37.16 0.33 -2.16 16 2 C -0.10 -1.94 2.34 -90.62 -0.21 -2.15 16 3 H 0.07 1.45 7.94 -51.93 -0.41 1.03 16 4 C 0.15 3.47 4.70 -4.04 -0.02 3.45 16 5 N -0.55 -13.40 2.63 -165.66 -0.44 -13.83 16 6 C -0.26 -6.89 8.15 -15.06 -0.12 -7.01 16 7 H 0.06 1.64 7.08 -52.49 -0.37 1.27 16 8 C 0.02 0.41 4.93 -17.43 -0.09 0.32 16 9 N -0.89 -24.87 11.39 55.49 0.63 -24.24 16 10 Si 0.89 21.41 29.62 -169.99 -5.03 16.37 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.13 2.88 5.12 -67.92 -0.35 2.53 16 15 C -0.20 -4.13 9.79 -26.73 -0.26 -4.39 16 16 C -0.23 -4.45 8.79 -26.73 -0.24 -4.68 16 17 C -0.10 -1.65 3.13 -89.80 -0.28 -1.93 16 18 C -0.14 -2.02 7.63 -25.92 -0.20 -2.21 16 19 C -0.15 -2.09 8.08 -25.90 -0.21 -2.30 16 20 C -0.13 -2.21 6.59 -25.90 -0.17 -2.38 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.28 5.30 -51.93 -0.28 1.00 16 24 H 0.10 2.65 4.52 -51.93 -0.23 2.41 16 25 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 26 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 27 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 28 H 0.10 2.20 6.89 -51.93 -0.36 1.85 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.74 8.01 -51.93 -0.42 1.33 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.19 7.96 -51.93 -0.41 0.77 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -27.07 296.51 -8.87 -35.94 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.68 Total: 4.20 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.82 Total: -22.90 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.20 Total: -38.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.07 -8.87 -35.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706770106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.409 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds