Wall clock time and date at job start Mon Mar 30 2020 02:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46894 * 111.00006 * 274.99752 * 12 2 1 14 14 C 1.53005 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.46926 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.64317 * 305.00044 * 15 14 13 17 17 C 1.53020 * 109.64390 * 65.42570 * 15 14 13 18 18 C 1.50163 * 110.09789 * 168.90505 * 17 15 14 19 19 C 1.29449 * 124.14383 * 343.27926 * 18 17 15 20 20 C 1.50059 * 124.07633 * 0.24007 * 19 18 17 21 21 C 1.53026 * 110.15087 * 342.87102 * 20 19 18 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.00902 * 110.99844 * 151.04691 * 12 2 1 27 27 H 1.08997 * 109.47383 * 300.00362 * 13 12 2 28 28 H 1.09003 * 109.46973 * 60.00294 * 13 12 2 29 29 H 1.08994 * 109.47064 * 300.00040 * 14 13 12 30 30 H 1.08995 * 109.46676 * 60.00580 * 14 13 12 31 31 H 1.09001 * 109.35448 * 289.32196 * 17 15 14 32 32 H 1.08997 * 109.36335 * 48.90824 * 17 15 14 33 33 H 1.07999 * 117.89530 * 163.03050 * 18 17 15 34 34 H 1.08007 * 117.96102 * 180.26652 * 19 18 17 35 35 H 1.09006 * 109.36128 * 222.66349 * 20 19 18 36 36 H 1.09001 * 109.35876 * 103.07642 * 20 19 18 37 37 H 1.08995 * 109.63712 * 289.75051 * 21 20 19 38 38 H 1.08998 * 109.81942 * 169.21952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2227 2.3469 14 6 2.5949 -0.5330 3.5746 15 6 2.6597 0.4200 4.7697 16 1 3.2647 1.2895 4.5127 17 6 1.2464 0.8700 5.1461 18 6 1.2662 1.5809 6.4686 19 6 2.2431 1.5132 7.3153 20 6 3.4961 0.7184 7.0916 21 6 3.2800 -0.3025 5.9723 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7173 1.1669 -3.4844 26 1 2.9173 -1.1205 1.0289 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6165 2.5524 29 1 1.9181 -1.3563 3.8031 30 1 3.5902 -0.9270 3.3693 31 1 0.8640 1.5410 4.3769 32 1 0.5964 -0.0021 5.2174 33 1 0.4129 2.1900 6.7277 34 1 2.1503 2.0627 8.2405 35 1 3.7617 0.1961 8.0107 36 1 4.3067 1.3923 6.8142 37 1 2.6054 -1.0863 6.3167 38 1 4.2348 -0.7417 5.6833 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706880323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:38 Heat of formation + Delta-G solvation = -15.089417 kcal Electronic energy + Delta-G solvation = -15187.941285 eV Core-core repulsion = 12836.173804 eV Total energy + Delta-G solvation = -2351.767481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.83341 -36.01637 -33.51172 -31.83362 -30.79525 -28.95977 -26.32638 -25.12607 -23.53118 -21.94200 -20.36606 -19.66489 -17.90905 -16.41411 -16.03467 -14.98593 -14.50679 -14.32406 -13.96859 -13.48817 -13.38739 -12.93054 -12.58664 -12.34766 -12.09514 -11.83947 -11.66640 -11.16570 -10.93660 -10.84296 -10.70510 -10.48249 -10.32026 -10.16090 -10.09394 -9.95096 -9.63245 -8.99819 -8.78167 -8.44858 -7.20038 -6.00098 -4.06481 2.27335 3.31323 3.37467 3.40615 4.41895 4.66771 4.76009 4.84011 5.22322 5.26838 5.31799 5.32791 5.50724 5.59104 5.64119 5.74766 5.78314 5.90506 5.99442 6.05780 6.16772 6.21650 6.26635 6.38866 6.59687 6.69877 6.71002 6.93100 6.94386 7.17981 7.28270 7.55643 7.81152 7.94266 8.31196 8.44723 8.73345 9.05130 9.59463 11.06323 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061370 B = 0.004693 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.138876 B = 5964.437987 C = 6238.594528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.691 5.691 13 C 0.060 3.940 14 C -0.110 4.110 15 C -0.085 4.085 16 H 0.069 0.931 17 C -0.089 4.089 18 C -0.148 4.148 19 C -0.166 4.166 20 C -0.090 4.090 21 C -0.115 4.115 22 H 0.003 0.997 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.015 0.985 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 0.495 16.436 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.070 4.070 14 C -0.148 4.148 15 C -0.104 4.104 16 H 0.087 0.913 17 C -0.126 4.126 18 C -0.166 4.166 19 C -0.184 4.184 20 C -0.127 4.127 21 C -0.152 4.152 22 H 0.022 0.978 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.330 0.378 16.451 16.620 hybrid contribution 0.952 0.265 -1.043 1.437 sum 3.282 0.643 15.408 15.767 Atomic orbital electron populations 1.21702 0.97957 0.99256 0.99242 1.19102 0.92600 0.92290 0.85757 0.98299 1.21284 1.31437 1.12366 0.90535 0.92252 1.24926 0.95107 0.94985 0.99042 1.69901 1.36808 1.22857 1.23399 0.86524 0.79227 0.79300 0.82486 1.20621 1.21294 1.19949 1.60729 1.31917 1.33330 1.06179 1.21938 0.99631 0.94104 0.91332 1.21634 1.01170 0.98196 0.93814 1.21194 0.96101 0.98527 0.94607 0.91286 1.20590 0.97407 1.00044 0.94574 1.22178 0.98473 0.99752 0.96210 1.22002 0.96195 1.00986 0.99229 1.20433 0.96082 0.97360 0.98796 1.21654 1.00884 0.97660 0.95012 0.97765 0.90221 0.95024 0.92966 0.85485 0.96688 0.91858 0.91449 0.92440 0.90647 0.90668 0.88305 0.88475 0.91519 0.91185 0.91856 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.48 2.60 -68.86 -0.18 5.30 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.49 8.59 -34.44 -0.30 -14.79 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 7 N -0.89 -25.86 11.33 55.43 0.63 -25.23 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.69 -15.17 6.30 -107.95 -0.68 -15.85 16 13 C 0.06 1.10 5.26 -3.82 -0.02 1.08 16 14 C -0.11 -1.60 4.95 -26.73 -0.13 -1.74 16 15 C -0.09 -1.07 2.23 -90.40 -0.20 -1.27 16 16 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 17 C -0.09 -1.10 4.94 -28.13 -0.14 -1.24 16 18 C -0.15 -1.65 9.80 -35.86 -0.35 -2.00 16 19 C -0.17 -1.72 9.80 -35.91 -0.35 -2.07 16 20 C -0.09 -0.88 6.12 -28.18 -0.17 -1.05 16 21 C -0.11 -1.23 5.31 -26.51 -0.14 -1.37 16 22 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 23 H 0.08 2.20 6.08 -51.93 -0.32 1.89 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.33 7.03 8.22 -39.29 -0.32 6.70 16 27 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 28 H 0.06 1.18 6.14 -51.93 -0.32 0.87 16 29 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.98 7.14 -51.93 -0.37 0.61 16 32 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.10 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -28.67 298.65 -9.03 -37.70 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.72 Total: 2.75 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -1.74 Total: -20.35 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.05 Total: -41.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.67 -9.03 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706880323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.607 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds