Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47114 * 2 1 4 4 C 1.53002 * 109.46506 * 119.99284 * 2 1 3 5 5 C 1.50703 * 109.46746 * 186.59298 * 4 2 1 6 6 H 1.07997 * 120.00578 * 5.43359 * 5 4 2 7 7 C 1.37880 * 119.99849 * 185.43670 * 5 4 2 8 8 N 1.31509 * 120.00187 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99923 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47149 * 90.00233 * 9 7 5 11 11 H 1.48503 * 109.47325 * 210.00167 * 9 7 5 12 12 H 1.48495 * 109.47460 * 330.00222 * 9 7 5 13 13 N 1.46900 * 109.47621 * 239.99137 * 2 1 3 14 14 C 1.47601 * 110.99819 * 161.63808 * 13 2 1 15 15 C 1.53625 * 88.08122 * 221.94192 * 14 13 2 16 16 C 1.46789 * 110.99498 * 65.88392 * 13 2 1 17 17 C 1.53685 * 115.02047 * 21.14523 * 16 13 2 18 18 C 1.55023 * 104.02693 * 207.13226 * 17 16 13 19 19 C 1.54947 * 102.83731 * 37.41918 * 18 17 16 20 20 C 1.53297 * 115.26702 * 255.54670 * 16 13 2 21 21 H 1.09011 * 109.46924 * 60.00741 * 1 2 3 22 22 H 1.08998 * 109.47481 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47532 * 300.01022 * 1 2 3 24 24 H 1.09001 * 109.47300 * 306.58768 * 4 2 1 25 25 H 1.08994 * 109.47245 * 66.59479 * 4 2 1 26 26 H 0.97001 * 120.00297 * 180.02562 * 8 7 5 27 27 H 1.08997 * 113.45637 * 336.74758 * 14 13 2 28 28 H 1.09005 * 113.45074 * 107.08947 * 14 13 2 29 29 H 1.08995 * 114.20731 * 271.87975 * 15 14 13 30 30 H 1.09000 * 114.20254 * 139.06194 * 15 14 13 31 31 H 1.09006 * 110.51558 * 325.77252 * 17 16 13 32 32 H 1.08997 * 110.51542 * 88.49161 * 17 16 13 33 33 H 1.08999 * 110.74146 * 279.08280 * 18 17 16 34 34 H 1.08999 * 110.74111 * 155.75384 * 18 17 16 35 35 H 1.08997 * 110.47748 * 203.69754 * 19 18 17 36 36 H 1.08997 * 110.59244 * 81.12667 * 19 18 17 37 37 H 1.08992 * 110.07991 * 248.56227 * 20 16 13 38 38 H 1.09001 * 110.08283 * 10.06437 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7211 1.2494 5 6 3.5380 -0.5814 1.3337 6 1 4.0634 0.0390 0.6229 7 6 4.2380 -1.2459 2.3184 8 7 5.5453 -1.1236 2.3923 9 14 3.3292 -2.3187 3.5483 10 1 3.2385 -3.7050 3.0239 11 1 4.0646 -2.3246 4.8384 12 1 1.9620 -1.7793 3.7604 13 7 2.0197 -0.6927 -1.1993 14 6 3.4291 -0.3481 -1.4706 15 6 3.0645 -0.2497 -2.9597 16 6 1.6672 0.0492 -2.4159 17 6 1.3598 1.5397 -2.2022 18 6 0.3932 1.8939 -3.3613 19 6 -0.4772 0.6181 -3.4858 20 6 0.5103 -0.5413 -3.2302 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5140 0.8898 24 1 1.5834 -0.2798 2.1354 25 1 1.7760 -1.7771 1.1925 26 1 6.0378 -1.5914 3.0849 27 1 3.7347 0.6032 -1.0351 28 1 4.1244 -1.1569 -1.2459 29 1 3.1408 -1.1922 -3.5017 30 1 3.5302 0.5877 -3.4794 31 1 0.8744 1.6954 -1.2387 32 1 2.2724 2.1317 -2.2713 33 1 0.9459 2.0755 -4.2830 34 1 -0.2209 2.7563 -3.1019 35 1 -0.9028 0.5430 -4.4864 36 1 -1.2676 0.6185 -2.7352 37 1 0.8811 -0.9330 -4.1773 38 1 0.0203 -1.3335 -2.6641 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706911662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = 8.490178 kcal Electronic energy + Delta-G solvation = -16503.766057 eV Core-core repulsion = 14153.021063 eV Total energy + Delta-G solvation = -2350.744993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17475 -36.87372 -35.50018 -34.12748 -30.19700 -29.63607 -28.15998 -27.32323 -24.67180 -23.20200 -21.63514 -21.06450 -19.05178 -18.54695 -17.29287 -16.83992 -16.44440 -15.87982 -15.01982 -14.96846 -14.45576 -14.35671 -13.81119 -13.59836 -13.36725 -13.23603 -12.78897 -12.74218 -12.50632 -12.15902 -12.09340 -11.87951 -11.87618 -11.72422 -11.56857 -11.25693 -11.02992 -10.95268 -10.77096 -10.68692 -9.50182 -8.23762 -6.23763 1.33266 1.33764 1.45369 2.37393 3.07394 3.21574 3.58136 3.71441 3.94651 4.07118 4.22788 4.31329 4.38917 4.43198 4.57037 4.65043 4.70606 4.73156 4.87153 4.91064 4.92137 5.02879 5.08432 5.10076 5.12861 5.16552 5.22603 5.27899 5.31793 5.41402 5.47524 5.54406 5.56638 5.68228 5.85912 6.34487 6.49191 6.81547 7.38476 8.91435 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.008364 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.140743 B = 3347.005476 C = 3648.551095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.035 0.965 4 C -0.004 4.004 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.253 1.253 13 N -0.464 5.464 14 C 0.026 3.974 15 C -0.131 4.131 16 C 0.054 3.946 17 C -0.145 4.145 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.101 4.101 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.015 0.985 25 H 0.012 0.988 26 H 0.262 0.738 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 4.275 -12.217 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 H 0.053 0.947 4 C -0.041 4.041 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.765 3.235 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.177 1.177 13 N -0.186 5.186 14 C -0.104 4.104 15 C -0.169 4.169 16 C -0.037 4.037 17 C -0.184 4.184 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.139 4.139 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.572 3.515 -11.970 17.711 hybrid contribution 0.785 0.159 1.205 1.446 sum -11.787 3.674 -10.765 16.380 Atomic orbital electron populations 1.21991 0.93540 1.02117 1.02427 1.21958 0.95554 0.95350 0.91762 0.94674 1.19545 0.94784 0.95807 0.93993 1.21660 0.92251 1.27887 1.13561 0.92649 1.25845 0.95394 0.98121 0.99640 1.70046 1.08017 1.45518 1.35678 0.85808 0.79705 0.79519 0.78468 1.20073 1.21182 1.17652 1.68818 1.04861 1.43785 1.01176 1.23380 0.92650 0.98971 0.95353 1.23294 0.95744 1.02648 0.95197 1.22905 0.95521 0.93237 0.92006 1.22852 1.00299 0.94426 1.00780 1.22421 0.96982 0.97925 0.97538 1.22399 0.97252 0.93832 1.02211 1.21969 0.94805 0.98158 0.98969 0.90348 0.92797 0.92145 0.96646 0.96969 0.92907 0.93436 0.93346 0.88834 0.89669 0.90396 0.92426 0.90623 0.90532 0.89921 0.91664 0.90619 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 8.49 71.98 0.61 -3.99 16 2 C 0.06 2.53 1.55 44.91 0.07 2.59 16 3 H 0.04 1.48 5.84 -2.38 -0.01 1.47 16 4 C 0.00 -0.18 3.71 29.85 0.11 -0.07 16 5 C -0.52 -29.81 8.42 25.60 0.22 -29.60 16 6 H 0.06 3.41 5.23 -2.91 -0.02 3.40 16 7 C 0.01 0.36 5.47 84.66 0.46 0.82 16 8 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 9 Si 0.94 46.41 27.36 68.60 1.88 48.29 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.25 -11.73 6.70 99.48 0.67 -11.07 16 13 N -0.46 -18.08 5.97 -860.08 -5.13 -23.21 16 14 C 0.03 1.06 5.11 82.86 0.42 1.48 16 15 C -0.13 -3.99 7.50 30.77 0.23 -3.76 16 16 C 0.05 1.60 0.66 0.32 0.00 1.60 16 17 C -0.15 -3.87 4.48 31.52 0.14 -3.73 16 18 C -0.11 -2.15 6.91 31.95 0.22 -1.93 16 19 C -0.12 -2.26 6.30 31.74 0.20 -2.06 16 20 C -0.10 -2.45 5.97 31.18 0.19 -2.26 16 21 H 0.08 2.14 3.91 -2.38 -0.01 2.13 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 25 H 0.01 0.61 7.27 -2.39 -0.02 0.59 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.05 2.13 6.35 -2.39 -0.02 2.11 16 28 H 0.05 2.31 7.95 -2.38 -0.02 2.30 16 29 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 2.25 8.04 -2.39 -0.02 2.24 16 31 H 0.08 2.25 4.21 -2.38 -0.01 2.24 16 32 H 0.06 1.60 7.88 -2.39 -0.02 1.58 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.23 7.21 -2.39 -0.02 1.21 16 37 H 0.08 1.65 7.91 -2.39 -0.02 1.63 16 38 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -65.62 277.41 0.90 -64.72 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.98 Total: 11.32 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 2.87 Total: -40.91 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -4.83 Total: -83.42 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -65.62 0.90 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706911662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.210 kcal (2) G-P(sol) polarization free energy of solvation -65.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds